SCoupledSolidProblem< ELEMENT > Member List

This is the complete list of members for SCoupledSolidProblem< ELEMENT >, including all inherited members.

actions_after_adapt()	oomph::Problem	inlinevirtual
actions_after_change_in_bifurcation_parameter()	oomph::Problem	inlineprotectedvirtual
actions_after_change_in_global_parameter(double *const &parameter_pt)	oomph::Problem	inlineprotectedvirtual
actions_after_explicit_stage()	oomph::ExplicitTimeSteppableObject	inlinevirtual
actions_after_explicit_timestep()	oomph::Problem	inlineprotectedvirtual
actions_after_implicit_timestep()	oomph::Problem	inlineprotectedvirtual
actions_after_implicit_timestep_and_error_estimation()	oomph::Problem	inlineprotectedvirtual
actions_after_newton_solve()	oomph::Problem	inlineprotectedvirtual
actions_after_newton_step()	oomph::Problem	inlineprotectedvirtual
actions_after_parameter_increase(double *const &parameter_pt)	oomph::Problem	inlineprotectedvirtual
actions_after_read_unstructured_meshes()	oomph::Problem	inlineprotectedvirtual
actions_before_adapt()	oomph::Problem	inlinevirtual
actions_before_explicit_stage()	oomph::ExplicitTimeSteppableObject	inlinevirtual
actions_before_explicit_timestep()	oomph::Problem	inlineprotectedvirtual
actions_before_implicit_timestep()	oomph::Problem	inlineprotectedvirtual
actions_before_newton_convergence_check()	oomph::Problem	inlineprotectedvirtual
actions_before_newton_solve()	oomph::Problem	inlineprotectedvirtual
actions_before_newton_step()	oomph::Problem	inlineprotectedvirtual
actions_before_read_unstructured_meshes()	oomph::Problem	inlineprotectedvirtual
Mercury3D::actionsAfterSolve()	DPMBase	protectedvirtual
SolidProblem::actionsAfterSolve()	SolidProblem< ELEMENT_TYPE >	inlinevirtual
actionsAfterTimeStep()	DPMBase	protectedvirtual
actionsBeforeOomphTimeStep()	SolidProblem< ELEMENT_TYPE >	inlinevirtual
actionsBeforeSolve()	SolidProblem< ELEMENT_TYPE >	inlinevirtual
actionsBeforeTimeLoop()	DPMBase	protectedvirtual
actionsBeforeTimeStep()	DPMBase	protectedvirtual
actionsOnRestart()	DPMBase	protectedvirtual
activate_bifurcation_tracking(double *const &parameter_pt, const DoubleVector &eigenvector, const bool &block_solve=true)	oomph::Problem
activate_bifurcation_tracking(double *const &parameter_pt, const DoubleVector &eigenvector, const DoubleVector &normalisation, const bool &block_solve=true)	oomph::Problem
activate_fold_tracking(double *const &parameter_pt, const bool &block_solve=true)	oomph::Problem
activate_hopf_tracking(double *const &parameter_pt, const bool &block_solve=true)	oomph::Problem
activate_hopf_tracking(double *const &parameter_pt, const double &omega, const DoubleVector &null_real, const DoubleVector &null_imag, const bool &block_solve=true)	oomph::Problem
activate_pitchfork_tracking(double *const &parameter_pt, const DoubleVector &symmetry_vector, const bool &block_solve=true)	oomph::Problem
adapt(unsigned &n_refined, unsigned &n_unrefined)	oomph::Problem
adapt()	oomph::Problem	inline
adapt_based_on_error_estimates(unsigned &n_refined, unsigned &n_unrefined, Vector< Vector< double >> &elemental_error)	oomph::Problem
adapt_based_on_error_estimates(Vector< Vector< double >> &elemental_error)	oomph::Problem	inline
adaptive_unsteady_newton_solve(const double &dt_desired, const double &epsilon)	oomph::Problem
adaptive_unsteady_newton_solve(const double &dt_desired, const double &epsilon, const bool &shift_values)	oomph::Problem
add_eigenvector_to_dofs(const double &epsilon, const DoubleVector &eigenvector)	oomph::Problem
add_global_data(Data *const &global_data_pt)	oomph::Problem	inline
add_sub_mesh(Mesh *const &mesh_pt)	oomph::Problem	inline
add_time_stepper_pt(TimeStepper *const &time_stepper_pt)	oomph::Problem
add_to_dofs(const double &lambda, const DoubleVector &increment_dofs)	oomph::Problem	virtual
addAnisotropy(double Ex, double Ey, double Ez)	SolidProblem< ELEMENT_TYPE >	inline
addDissipation(double dissipation)	SolidProblem< ELEMENT_TYPE >	inline
Always_take_one_newton_step	oomph::Problem	protected
append_	DPMBase	private
arc_length_step_solve(double *const &parameter_pt, const double &ds, const unsigned &max_adapt=0)	oomph::Problem
arc_length_step_solve(Data *const &data_pt, const unsigned &data_index, const double &ds, const unsigned &max_adapt=0)	oomph::Problem
arc_length_step_solve_helper(double *const &parameter_pt, const double &ds, const unsigned &max_adapt)	oomph::Problem	private
Arc_length_step_taken	oomph::Problem	protected
are_hessian_products_calculated_analytically()	oomph::Problem	inline
areInContact(const BaseParticle *pI, const BaseParticle *pJ)	DPMBase	static
Assembly_handler_pt	oomph::Problem	private
assembly_handler_pt()	oomph::Problem	inline
assembly_handler_pt() const	oomph::Problem	inline
Assembly_method enum name	oomph::Problem	protected
assign_eigenvector_to_dofs(DoubleVector &eigenvector)	oomph::Problem
assign_eqn_numbers(const bool &assign_local_eqn_numbers=true)	oomph::Problem
assign_initial_values_impulsive()	oomph::Problem
assign_initial_values_impulsive(const double &dt)	oomph::Problem
autoNumber()	DPMBase
backgroundDrag_	DPMBase	private
BaseCoupling()=default	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >
bifurcation_adapt_doc_errors(const unsigned &bifurcation_type)	oomph::Problem	private
bifurcation_adapt_helper(unsigned &n_refined, unsigned &n_unrefined, const unsigned &bifurcation_type, const bool &actually_adapt=true)	oomph::Problem	private
Bifurcation_detection	oomph::Problem	protected
bifurcation_parameter_pt() const	oomph::Problem
Bisect_to_find_bifurcation	oomph::Problem	protected
body_force_fct	SolidProblem< ELEMENT_TYPE >	protected
Boundary enum name	SolidProblem< ELEMENT_TYPE >
boundaryHandler	DPMBase
boundaryVTKWriter_	DPMBase	private
build_global_mesh()	oomph::Problem
calculate_continuation_derivatives(double *const &parameter_pt)	oomph::Problem	protected
calculate_continuation_derivatives(const DoubleVector &z)	oomph::Problem	protected
calculate_continuation_derivatives_fd(double *const &parameter_pt)	oomph::Problem	protected
calculate_continuation_derivatives_fd_helper(double *const &parameter_pt)	oomph::Problem	private
calculate_continuation_derivatives_helper(const DoubleVector &z)	oomph::Problem	private
Calculate_dparameter_analytic	oomph::Problem	protected
Calculate_hessian_products_analytic	oomph::Problem	protected
calculate_predictions()	oomph::Problem
cgFunction_	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	private
cgHandler	DPMBase
CGMapping_	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	private
checkAndDuplicatePeriodicParticles()	DPMBase	protected
checkInteractionWithBoundaries()	DPMBase	protectedvirtual
checkParticleForInteraction(const BaseParticle &P) final	MercuryBase	virtual
checkParticleForInteractionLocal(const BaseParticle &P) final	MercuryBase	virtual
checkParticleForInteractionLocalPeriodic(const BaseParticle &P)	DPMBase
checkResidual()	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
checkSettings()	DPMBase
clock_	DPMBase
closeFiles()	DPMBase
communicator_pt()	oomph::Problem	inline
communicator_pt() const	oomph::Problem	inline
Communicator_pt	oomph::Problem	protected
computeAdditionalForces()	DPMBase	inlineprotectedvirtual
computeAllForces()	DPMBase	protectedvirtual
computeExternalForces(BaseParticle *)	DPMBase	protectedvirtual
computeForcesDueToWalls(BaseParticle *, BaseWall *)	DPMBase	protectedvirtual
computeInternalForce(BaseParticle *, BaseParticle *)	DPMBase	protectedvirtual
computeInternalForces(BaseParticle *obj) override	Mercury3D	protectedvirtual
computeOneTimeStep()	DPMBase	virtual
computeOneTimeStepForSCoupling(const unsigned &nStepsMercury, const unsigned max_adapt=0)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
computeSCouplingForcesFromTriangles(ELEMENT *const elem_pt, const unsigned &nTriangles, unsigned &wallID, Vector< Vector< double > > &nodalCouplingForces)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
computeWallForces(BaseWall *w) override	Mercury3D	protectedvirtual
constitutive_law_pt	SolidProblem< ELEMENT_TYPE >	protected
constructor()	Mercury3D
Continuation_direction	oomph::Problem	protected
Continuation_time_stepper	oomph::Problem	protectedstatic
continueFlag_	DPMBase	privatestatic
continueSolve() const	DPMBase	protectedvirtual
copy(Problem *orig_problem_pt)	oomph::Problem
Copy_of_problem_pt	oomph::Problem	protected
countPinned()	SolidProblem< ELEMENT_TYPE >	inline
coupleBoundaries(std::vector< unsigned > b)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
coupleBoundary(unsigned b)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
coupledBoundaries_	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	private
createDPMWallsFromFiniteElems()	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
createTriangleWall(std::array< Vec3D, 3 > vertex)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
currentMaxRelativeDisplacement_	MercuryBase	private
dataFile	DPMBase
deactivate_bifurcation_tracking()	oomph::Problem	inline
debug_hook_fct(const unsigned &i)	oomph::Problem	inlinevirtual
decompose()	DPMBase	virtual
Default_assembly_handler_pt	oomph::Problem	private
Default_eigen_solver_pt	oomph::Problem	private
Default_linear_solver_pt	oomph::Problem	private
Default_set_initial_condition_called	oomph::Problem	private
delete_all_external_storage()	oomph::Problem
deleteGhostParticles(std::set< BaseParticle * > &particlesToBeDeleted)	DPMBase	protected
density_	SolidProblem< ELEMENT_TYPE >	protected
describe_dofs(std::ostream &out= *(oomph_info.stream_pt())) const	oomph::Problem
Desired_newton_iterations_ds	oomph::Problem	protected
Desired_proportion_of_arc_length	oomph::Problem	protected
disable_discontinuous_formulation()	oomph::Problem	inline
disable_globally_convergent_newton_method()	oomph::Problem	inline
disable_info_in_newton_solve()	oomph::Problem	inline
disable_jacobian_reuse()	oomph::Problem	inline
disable_mass_matrix_reuse()	oomph::Problem
disable_store_local_dof_pt_in_elements()	oomph::Problem	inline
disableLogSurfaceCoupling()	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
disableSoftStop()	DPMBase	inlineprotected
disableSoftStop_	DPMBase	private
discontinueSolve()	DPMBase	inlineprotected
Discontinuous_element_formulation	oomph::Problem	protected
distributed() const	oomph::Problem	inline
doc_errors(DocInfo &doc_info)	oomph::Problem
doc_errors()	oomph::Problem	inline
Doc_time_in_distribute	oomph::Problem	protected
does_pointer_correspond_to_problem_data(double *const &parameter_pt)	oomph::Problem	protected
dof(const unsigned &i)	oomph::Problem	inline
dof(const unsigned &i) const	oomph::Problem	inline
Dof_current	oomph::Problem	protected
dof_current(const unsigned &i)	oomph::Problem	inlineprotected
Dof_current_offset	oomph::Problem	protected
Dof_derivative	oomph::Problem	protected
dof_derivative(const unsigned &i)	oomph::Problem	inlineprotected
Dof_derivative_offset	oomph::Problem	protected
dof_distribution_pt() const	oomph::Problem	inline
Dof_distribution_pt	oomph::Problem	protected
dof_pt(const unsigned &i)	oomph::Problem	inline
dof_pt(const unsigned &i) const	oomph::Problem	inline
Dof_pt	oomph::Problem	protected
domainHandler	DPMBase
DomainSplit enum name	DPMBase
doubly_adaptive_unsteady_newton_solve(const double &dt, const double &epsilon, const unsigned &max_adapt, const bool &first, const bool &shift=true)	oomph::Problem	inline
doubly_adaptive_unsteady_newton_solve(const double &dt, const double &epsilon, const unsigned &max_adapt, const unsigned &suppress_resolve_after_spatial_adapt_flag, const bool &first, const bool &shift=true)	oomph::Problem	inline
doubly_adaptive_unsteady_newton_solve_helper(const double &dt, const double &epsilon, const unsigned &max_adapt, const unsigned &suppress_resolve_after_spatial_adapt, const bool &first, const bool &shift=true)	oomph::Problem	private
DPMBase()	DPMBase
DPMBase(const DPMBase &other)	DPMBase
Ds_current	oomph::Problem	protected
DTSF_max_increase	oomph::Problem	protected
DTSF_min_decrease	oomph::Problem	protected
Dummy_time_value	oomph::ExplicitTimeSteppableObject	privatestatic
dump(std::ofstream &dump_file) const	oomph::Problem	virtual
dump(const std::string &dump_file_name) const	oomph::Problem	inline
eigen_solver_pt()	oomph::Problem	inline
eigen_solver_pt() const	oomph::Problem	inline
Eigen_solver_pt	oomph::Problem	private
elasticModulus_	SolidProblem< ELEMENT_TYPE >	protected
ELEMENT typedef	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >
Element_count_per_dof	oomph::Problem	protected
Empty_actions_after_read_unstructured_meshes_has_been_called	oomph::Problem	private
Empty_actions_before_read_unstructured_meshes_has_been_called	oomph::Problem	private
enable_discontinuous_formulation()	oomph::Problem	inline
enable_globally_convergent_newton_method()	oomph::Problem	inline
enable_info_in_newton_solve()	oomph::Problem	inline
enable_jacobian_reuse()	oomph::Problem	inline
enable_mass_matrix_reuse()	oomph::Problem
enable_store_local_dof_pt_in_elements()	oomph::Problem	inline
eneFile	DPMBase
explicit_time_stepper_pt()	oomph::Problem	inline
Explicit_time_stepper_pt	oomph::Problem	private
explicit_timestep(const double &dt, const bool &shift_values=true)	oomph::Problem
ExplicitTimeSteppableObject()	oomph::ExplicitTimeSteppableObject	inline
ExplicitTimeSteppableObject(const ExplicitTimeSteppableObject &)=delete	oomph::ExplicitTimeSteppableObject
FD_step_used_in_get_hessian_vector_products	oomph::Problem	protected
fillDomainWithParticles(unsigned N=50)	DPMBase
finaliseSolve()	DPMBase
findNextExistingDataFile(Mdouble tMin, bool verbose=true)	DPMBase
finishStatistics()	DPMBase	protectedvirtual
First_jacobian_sign_change	oomph::Problem	protected
flush_global_data()	oomph::Problem	inline
flush_sub_meshes()	oomph::Problem	inline
forceWriteOutputFiles()	DPMBase
forceWritePythonFileForVTKVisualisation_	DPMBase	private
fStatFile	DPMBase
gatherContactStatistics(unsigned int index1, int index2, Vec3D Contact, Mdouble delta, Mdouble ctheta, Mdouble fdotn, Mdouble fdott, Vec3D P1_P2_normal_, Vec3D P1_P2_tangential)	DPMBase	virtual
gatherContactStatistics()	DPMBase	protected
get1DParametersFromRunNumber(int size_x) const	DPMBase
get2DParametersFromRunNumber(int size_x, int size_y) const	DPMBase
get3DParametersFromRunNumber(int size_x, int size_y, int size_z) const	DPMBase
get_all_error_estimates(Vector< Vector< double >> &elemental_error)	oomph::Problem
get_bifurcation_eigenfunction(Vector< DoubleVector > &eigenfunction)	oomph::Problem
get_derivative_wrt_global_parameter(double *const &parameter_pt, DoubleVector &result)	oomph::Problem
get_dofs(DoubleVector &dofs) const	oomph::Problem	virtual
get_dofs(const unsigned &t, DoubleVector &dofs) const	oomph::Problem	virtual
get_dvaluesdt(DoubleVector &f)	oomph::Problem	virtual
get_eigenproblem_matrices(CRDoubleMatrix &mass_matrix, CRDoubleMatrix &main_matrix, const double &shift=0.0)	oomph::Problem	virtual
get_fd_jacobian(DoubleVector &residuals, DenseMatrix< double > &jacobian)	oomph::Problem
get_hessian_vector_products(DoubleVectorWithHaloEntries const &Y, Vector< DoubleVectorWithHaloEntries > const &C, Vector< DoubleVectorWithHaloEntries > &product)	oomph::Problem
get_inverse_mass_matrix_times_residuals(DoubleVector &Mres)	oomph::Problem	virtual
get_jacobian(DoubleVector &residuals, DenseDoubleMatrix &jacobian)	oomph::Problem	virtual
get_jacobian(DoubleVector &residuals, CRDoubleMatrix &jacobian)	oomph::Problem	virtual
get_jacobian(DoubleVector &residuals, CCDoubleMatrix &jacobian)	oomph::Problem	virtual
get_jacobian(DoubleVector &residuals, SumOfMatrices &jacobian)	oomph::Problem	inlinevirtual
get_residuals(DoubleVector &residuals)	oomph::Problem	virtual
get_x(const Vector< double > &xi, Vector< double > &x) const	SolidProblem< ELEMENT_TYPE >	inline
getAppend() const	DPMBase
getBackgroundDrag() const	DPMBase	inline
getCenter() const	DPMBase	inline
getCentreOfMass() const	DPMBase
getCGFunction()	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
getCGWidth()	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
getCPUTime()	DPMBase	inline
getCurrentDomain()	DPMBase
getDataFile()	DPMBase
getDataFile() const	DPMBase
getDeflection(Vector< double > xi, unsigned d) const	SolidProblem< ELEMENT_TYPE >	inline
getDensity() const	SolidProblem< ELEMENT_TYPE >	inline
getDomainSize(std::array< double, 3 > &min, std::array< double, 3 > &max) const	SolidProblem< ELEMENT_TYPE >	inline
getElasticEnergy() const	DPMBase
getElasticModulus() const	SolidProblem< ELEMENT_TYPE >	inline
getElementBoundingBox(ELEMENT *&elem_pt, Vec3D &min, Vec3D &max)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
getEneFile()	DPMBase
getEneFile() const	DPMBase
getFStatFile()	DPMBase
getFStatFile() const	DPMBase
getGravitationalEnergy(Vec3D origin={0, 0, 0}) const	DPMBase
getGravity() const	DPMBase
getHGrid()	MercuryBase	inlineprotected
getHGrid() const	MercuryBase	inlineprotected
getHGridCellOverSizeRatio() const	MercuryBase
getHGridCurrentMaxRelativeDisplacement() const	MercuryBase
getHGridDistribution() const	MercuryBase
getHGridMaxLevels() const	MercuryBase
getHGridMethod() const	MercuryBase	inline
getHGridTargetMaxInteractionRadius() const	MercuryBase	virtual
getHGridTargetMinInteractionRadius() const	MercuryBase	virtual
getHGridTargetNumberOfBuckets() const	MercuryBase	virtual
getHGridTotalCurrentMaxRelativeDisplacement() const	MercuryBase
getHGridUpdateEachTimeStep() const final	MercuryBase	virtual
getInfo(const BaseParticle &P) const	DPMBase	virtual
getInteractionFile()	DPMBase
getInteractionFile() const	DPMBase
getKineticEnergy() const	DPMBase
getKineticStress() const	DPMBase
getMassMomentumEnergy(double &mass, Vector< double > &com, Vector< double > &linearMomentum, Vector< double > &angularMomentum, double &elasticEnergy, double &kineticEnergy) const	SolidProblem< ELEMENT_TYPE >	inline
getMax() const	DPMBase	inline
getMin() const	DPMBase	inline
getName() const	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
getNextTime() const	DPMBase
getNToWrite() const	DPMBase
getNumberOfDomains()	DPMBase
getNumberOfOMPThreads() const	DPMBase
getNumberOfTimeSteps() const	DPMBase
getOomphGravity() const	SolidProblem< ELEMENT_TYPE >	inline
getOomphTime() const	SolidProblem< ELEMENT_TYPE >	inline
getOomphTimeStep() const	SolidProblem< ELEMENT_TYPE >	inline
getParticleDimensions() const	DPMBase
getParticlesWriteVTK() const	DPMBase
getPoissonRatio() const	SolidProblem< ELEMENT_TYPE >	inline
getRestarted() const	DPMBase
getRestartFile()	DPMBase
getRestartFile() const	DPMBase
getRestartVersion() const	DPMBase
getRotation() const	DPMBase	inline
getRotationalEnergy() const	DPMBase
getRunNumber() const	DPMBase
getSCoupledElements()	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
getSolidFeelsParticles() const	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
getStatFile()	DPMBase
getStatFile() const	DPMBase
getStaticStress() const	DPMBase
getSuperquadricParticlesWriteVTK() const	DPMBase
getSystemDimensions() const	DPMBase
getTime() const	DPMBase
getTimeMax() const	DPMBase
getTimeStep() const	DPMBase
getTotalEnergy() const	DPMBase
getTotalMass() const	DPMBase
getTotalMomentum() const	DPMBase
getTotalStress() const	DPMBase
getTotalVolume() const	DPMBase
getVtkWriter() const	DPMBase
getWallsWriteVTK() const	DPMBase
getWallTime()	DPMBase	inline
getWallVTKWriter()	DPMBase
getWritePythonFileForVTKVisualisation() const	DPMBase
getXBallsAdditionalArguments() const	DPMBase
getXBallsColourMode() const	DPMBase
getXBallsScale() const	DPMBase
getXBallsVectorScale() const	DPMBase
getXCenter() const	DPMBase	inline
getXMax() const	DPMBase	inline
getXMin() const	DPMBase	inline
getYCenter() const	DPMBase	inline
getYMax() const	DPMBase	inline
getYMin() const	DPMBase	inline
getZCenter() const	DPMBase	inline
getZMax() const	DPMBase	inline
getZMin() const	DPMBase	inline
Global_data_pt	oomph::Problem	private
global_data_pt(const unsigned &i)	oomph::Problem	inline
global_dof_pt(const unsigned &i)	oomph::Problem	inline
global_temporal_error_norm()	oomph::Problem	inlineprotectedvirtual
globally_convergent_line_search(const Vector< double > &x_old, const double &half_residual_squared_old, DoubleVector &gradient, DoubleVector &newton_dir, double &half_residual_squared, const double &stpmax)	oomph::Problem	private
Mercury3D::gravity_	DPMBase	private
SolidProblem::gravity_	SolidProblem< ELEMENT_TYPE >	protected
grid	MercuryBase	private
gridNeedsUpdate_	MercuryBase	private
handleParticleAddition(unsigned int id, BaseParticle *p)	DPMBase	virtual
handleParticleRemoval(unsigned int id)	DPMBase	virtual
hGridActionsAfterIntegration() override	MercuryBase	protectedvirtual
hGridActionsBeforeIntegration() override	MercuryBase	protectedvirtual
hGridActionsBeforeTimeLoop() override	MercuryBase	virtual
hGridActionsBeforeTimeStep() override	MercuryBase	virtual
hGridCellOverSizeRatio_	MercuryBase	private
hGridDistribution_	MercuryBase	private
hGridFindContactsWithinTargetCell(int x, int y, int z, unsigned int l)	Mercury3D	protected
hGridFindContactsWithTargetCell(int x, int y, int z, unsigned int l, BaseParticle *obj)	Mercury3D	protected
hGridFindParticleContacts(const BaseParticle *obj) override	Mercury3D	virtual
hGridFindParticlesWithTargetCell(int x, int y, int z, unsigned int l, BaseParticle *obj, std::vector< BaseParticle * > &list)	Mercury3D	protected
hGridGetInteractingParticleList(BaseParticle *obj, std::vector< BaseParticle * > &list) override	Mercury3D	protectedvirtual
hGridHasContactsInTargetCell(int x, int y, int z, unsigned int l, const BaseParticle *obj) const	Mercury3D	protected
hGridHasParticleContacts(const BaseParticle *obj) override	Mercury3D	protectedvirtual
hGridInfo(std::ostream &os=std::cout) const	MercuryBase
hGridInsertParticle(BaseParticle *obj) final	MercuryBase	protected
DPMBase::hGridInsertParticle(BaseParticle *obj UNUSED)	DPMBase	virtual
hGridMaxLevels_	MercuryBase	private
hGridMethod_	MercuryBase	private
hGridNeedsRebuilding()	MercuryBase
hGridRebuild()	MercuryBase	protected
hGridRemoveParticle(BaseParticle *obj) override	Mercury3D	protected
MercuryBase::hGridRemoveParticle(BaseParticle *obj UNUSED)	DPMBase	virtual
hGridUpdateMove(BaseParticle *iP, Mdouble move) final	MercuryBase	protectedvirtual
hGridUpdateParticle(BaseParticle *obj) override	Mercury3D	protected
MercuryBase::hGridUpdateParticle(BaseParticle *obj UNUSED)	DPMBase	virtual
importParticlesAs(ParticleHandler &particleHandler, InteractionHandler &interactionHandler, const ParticleSpecies *species)	DPMBase
incrementRunNumberInFile()	DPMBase	static
initialise_dt(const double &dt)	oomph::Problem
initialise_dt(const Vector< double > &dt)	oomph::Problem
initialiseSolve()	DPMBase
initialiseStatistics()	DPMBase	protectedvirtual
initialiseVTK() const	DPMBase	private
insertGhostParticle(BaseParticle *P)	DPMBase
integrateAfterForceComputation()	DPMBase	protectedvirtual
integrateBeforeForceComputation()	DPMBase	protectedvirtual
interactionFile	DPMBase
interactionHandler	DPMBase
interactionVTKWriter_	DPMBase	private
is_dparameter_calculated_analytically(double *const &parameter_pt)	oomph::Problem	inline
isPinned_	SolidProblem< ELEMENT_TYPE >	protected
isTimeEqualTo(Mdouble time) const	DPMBase	protected
Jacobian_has_been_computed	oomph::Problem	protected
Jacobian_reuse_is_enabled	oomph::Problem	protected
jacobian_reuse_is_enabled()	oomph::Problem	inline
Keep_temporal_error_below_tolerance	oomph::Problem	protected
launchNewRun(const char *name, bool quick=false)	DPMBase
linear_solver_pt()	oomph::Problem	inline
linear_solver_pt() const	oomph::Problem	inline
Linear_solver_pt	oomph::Problem	private
loadSolidMesh(std::string infileName, bool cubic=true)	SolidProblem< ELEMENT_TYPE >	inline
logSurfaceCoupling	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	private
make_copy()	oomph::Problem	virtual
Mass_matrix_has_been_computed	oomph::Problem	protected
mass_matrix_reuse_is_enabled()	oomph::Problem	inline
Mass_matrix_reuse_is_enabled	oomph::Problem	protected
mass_matrix_solver_for_explicit_timestepper_pt()	oomph::Problem	inline
mass_matrix_solver_for_explicit_timestepper_pt() const	oomph::Problem	inline
Mass_matrix_solver_for_explicit_timestepper_pt	oomph::Problem	private
max_	DPMBase	private
max_newton_iterations()	oomph::Problem	inline
Max_newton_iterations	oomph::Problem	protected
Max_res	oomph::Problem	protected
Max_residuals	oomph::Problem	protected
max_residuals()	oomph::Problem	inline
maximum_dt()	oomph::Problem	inline
Maximum_dt	oomph::Problem	protected
Mercury3D()	Mercury3D
Mercury3D(const DPMBase &other)	Mercury3D	explicit
Mercury3D(const Mercury3D &other)	Mercury3D
MercuryBase()	MercuryBase
MercuryBase(const MercuryBase &mercuryBase)	MercuryBase
mesh_pt()	oomph::Problem	inline
mesh_pt() const	oomph::Problem	inline
mesh_pt(const unsigned &imesh)	oomph::Problem	inline
mesh_pt(const unsigned &imesh) const	oomph::Problem	inline
Mesh_pt	oomph::Problem	private
min_	DPMBase	private
Minimum_ds	oomph::Problem	protected
Minimum_dt	oomph::Problem	protected
minimum_dt()	oomph::Problem	inline
Minimum_dt_but_still_proceed	oomph::Problem	protected
mpiInsertParticleCheck(BaseParticle *P)	DPMBase
mpiIsInCommunicationZone(BaseParticle *particle)	DPMBase
Mercury3D::name_	DPMBase	private
SolidProblem::name_	SolidProblem< ELEMENT_TYPE >	protected
ndof() const	oomph::Problem	inline
newton_solve()	oomph::Problem
newton_solve(unsigned const &max_adapt)	oomph::Problem
newton_solve_continuation(double *const &parameter_pt)	oomph::Problem	protected
newton_solve_continuation(double *const &parameter_pt, DoubleVector &z)	oomph::Problem	protected
newton_solver_tolerance()	oomph::Problem	inline
Newton_solver_tolerance	oomph::Problem	protected
nglobal_data() const	oomph::Problem	inline
Nnewton_iter_taken	oomph::Problem	protected
nsub_mesh() const	oomph::Problem	inline
ntime_stepper() const	oomph::Problem	inline
nToWrite_	DPMBase	private
numberOfDomains_	DPMBase	private
numberOfOMPThreads_	DPMBase	private
numberOfTimeSteps_	DPMBase	private
Numerical_zero_for_sparse_assembly	oomph::Problem	protected
operator=(const Problem &)=delete	oomph::Problem
oomph::ExplicitTimeSteppableObject::operator=(const ExplicitTimeSteppableObject &)=delete	oomph::ExplicitTimeSteppableObject
outputInteractionDetails() const	DPMBase	protected
outputStatistics()	DPMBase	protectedvirtual
outputXBallsData(std::ostream &os) const	DPMBase	protectedvirtual
outputXBallsDataParticle(unsigned int i, unsigned int format, std::ostream &os) const	DPMBase	protectedvirtual
p_adapt(unsigned &n_refined, unsigned &n_unrefined)	oomph::Problem
p_adapt()	oomph::Problem	inline
p_refine_selected_elements(const Vector< unsigned > &elements_to_be_refined)	oomph::Problem
p_refine_selected_elements(const Vector< PRefineableElement * > &elements_to_be_refined_pt)	oomph::Problem
p_refine_selected_elements(const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined)	oomph::Problem
p_refine_selected_elements(const unsigned &i_mesh, const Vector< PRefineableElement * > &elements_to_be_refined_pt)	oomph::Problem
p_refine_selected_elements(const Vector< Vector< unsigned >> &elements_to_be_refined)	oomph::Problem
p_refine_selected_elements(const Vector< Vector< PRefineableElement * >> &elements_to_be_refined_pt)	oomph::Problem
p_refine_uniformly(const Vector< unsigned > &nrefine_for_mesh)	oomph::Problem	inline
p_refine_uniformly(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)	oomph::Problem	inline
p_refine_uniformly(DocInfo &doc_info)	oomph::Problem	inline
p_refine_uniformly()	oomph::Problem	inline
p_refine_uniformly(const unsigned &i_mesh, DocInfo &doc_info)	oomph::Problem
p_refine_uniformly(const unsigned &i_mesh)	oomph::Problem	inline
p_refine_uniformly_and_prune(const Vector< unsigned > &nrefine_for_mesh)	oomph::Problem	inline
p_refine_uniformly_and_prune(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)	oomph::Problem	inline
p_refine_uniformly_and_prune(DocInfo &doc_info)	oomph::Problem	inline
p_refine_uniformly_aux(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info, const bool &prune)	oomph::Problem	private
p_unrefine_uniformly(DocInfo &doc_info)	oomph::Problem
p_unrefine_uniformly(const unsigned &i_mesh, DocInfo &doc_info)	oomph::Problem
paoloParticleHandler	DPMBase
Parameter_current	oomph::Problem	protected
Parameter_derivative	oomph::Problem	protected
particleDimensions_	DPMBase	private
particleHandler	DPMBase
Pause_at_end_of_sparse_assembly	oomph::Problem	protected
Perform_assembly_using_lists enum value	oomph::Problem	protected
Perform_assembly_using_maps enum value	oomph::Problem	protected
Perform_assembly_using_two_arrays enum value	oomph::Problem	protected
Perform_assembly_using_two_vectors enum value	oomph::Problem	protected
Perform_assembly_using_vectors_of_pairs enum value	oomph::Problem	protected
performGhostParticleUpdate()	DPMBase	protected
performGhostVelocityUpdate()	DPMBase	protected
periodicBoundaryHandler	DPMBase
pinBoundaries(std::vector< unsigned > b)	SolidProblem< ELEMENT_TYPE >	inline
pinBoundary(unsigned b)	SolidProblem< ELEMENT_TYPE >	inline
poissonRatio_	SolidProblem< ELEMENT_TYPE >	protected
prepareForSolve()	SolidProblem< ELEMENT_TYPE >	inline
printTime() const	DPMBase	protectedvirtual
Problem()	oomph::Problem
Problem(const Problem &dummy)=delete	oomph::Problem
Problem_is_nonlinear	oomph::Problem	protected
problem_is_nonlinear(const bool &prob_lin)	oomph::Problem	inline
processStatistics(bool)	DPMBase	protectedvirtual
random	DPMBase
Mercury3D::read(std::istream &is, ReadOptions opt=ReadOptions::ReadAll) override	MercuryBase	virtual
SolidProblem::read(std::ifstream &restart_file, bool &unsteady_restart)	oomph::Problem	virtual
SolidProblem::read(std::ifstream &restart_file)	oomph::Problem	inlinevirtual
readArguments(int argc, char *argv[])	DPMBase
readDataFile(std::string fileName="", unsigned int format=0)	DPMBase
readNextArgument(int &i, int argc, char *argv[]) override	MercuryBase	protectedvirtual
readNextDataFile(unsigned int format=0)	DPMBase
readNextFStatFile()	DPMBase
readOld(std::istream &is)	DPMBase	virtual
ReadOptions enum name	DPMBase
readParAndIniFiles(std::string fileName)	DPMBase
readRestartFile(ReadOptions opt=ReadOptions::ReadAll)	DPMBase
readRestartFile(std::string fileName, ReadOptions opt=ReadOptions::ReadAll)	DPMBase
readRunNumberFromFile()	DPMBase	static
readSpeciesFromDataFile(bool read=true)	DPMBase	inline
readSpeciesFromDataFile_	DPMBase	private
readUserDefinedWall(const std::string &type) const	DPMBase	inlinevirtual
rebuild_global_mesh()	oomph::Problem
refine_selected_elements(const Vector< unsigned > &elements_to_be_refined)	oomph::Problem
refine_selected_elements(const Vector< RefineableElement * > &elements_to_be_refined_pt)	oomph::Problem
refine_selected_elements(const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined)	oomph::Problem
refine_selected_elements(const unsigned &i_mesh, const Vector< RefineableElement * > &elements_to_be_refined_pt)	oomph::Problem
refine_selected_elements(const Vector< Vector< unsigned >> &elements_to_be_refined)	oomph::Problem
refine_selected_elements(const Vector< Vector< RefineableElement * >> &elements_to_be_refined_pt)	oomph::Problem
refine_uniformly(const Vector< unsigned > &nrefine_for_mesh)	oomph::Problem	inline
refine_uniformly(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)	oomph::Problem	inline
refine_uniformly(DocInfo &doc_info)	oomph::Problem	inline
refine_uniformly()	oomph::Problem	inline
refine_uniformly(const unsigned &i_mesh, DocInfo &doc_info)	oomph::Problem
refine_uniformly(const unsigned &i_mesh)	oomph::Problem	inline
refine_uniformly_and_prune(const Vector< unsigned > &nrefine_for_mesh)	oomph::Problem	inline
refine_uniformly_and_prune(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)	oomph::Problem	inline
refine_uniformly_and_prune(DocInfo &doc_info)	oomph::Problem	inline
refine_uniformly_aux(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info, const bool &prune)	oomph::Problem	private
Relaxation_factor	oomph::Problem	protected
removeDuplicatePeriodicParticles()	DPMBase	protected
removeOldFiles() const	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
reset_arc_length_parameters()	oomph::Problem	inline
reset_assembly_handler_to_default()	oomph::Problem
resetFileCounter()	DPMBase
restarted_	DPMBase	private
restartFile	DPMBase
restartVersion_	DPMBase	private
restore_dof_values()	oomph::Problem
rotation_	DPMBase	private
runNumber_	DPMBase	private
Saved_dof_pt	oomph::Problem	private
saveSolidMesh()	SolidProblem< ELEMENT_TYPE >	inline
Scale_arc_length	oomph::Problem	protected
sCoupledElements_	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	private
SCoupling()=default	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >
self_test()	oomph::Problem
set_analytic_dparameter(double *const &parameter_pt)	oomph::Problem	inline
set_analytic_hessian_products()	oomph::Problem	inline
set_consistent_pinned_values_for_continuation()	oomph::Problem	protected
set_dofs(const DoubleVector &dofs)	oomph::Problem	virtual
set_dofs(const unsigned &t, DoubleVector &dofs)	oomph::Problem
set_dofs(const unsigned &t, Vector< double * > &dof_pt)	oomph::Problem
set_explicit_time_stepper_pt(ExplicitTimeStepper *const &explicit_time_stepper_pt)	oomph::Problem
set_initial_condition()	oomph::Problem	inlineprotectedvirtual
set_pinned_values_to_zero()	oomph::Problem
set_timestepper_for_all_data(TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data=false)	oomph::Problem
setAppend(bool newAppendFlag)	DPMBase
setBackgroundDrag(Mdouble backgroundDrag)	DPMBase	inline
setBodyForceAsGravity(double gravity=9.8)	SolidProblem< ELEMENT_TYPE >	inline
setCGWidth(const double &width)	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
setDensity(double density)	SolidProblem< ELEMENT_TYPE >	inline
setDimension(unsigned int newDim)	DPMBase
setDissipation(double dissipation)	SolidProblem< ELEMENT_TYPE >	inline
setDomain(const Vec3D &min, const Vec3D &max)	DPMBase
setElasticModulus(double elasticModulus)	SolidProblem< ELEMENT_TYPE >	inline
setFileType(FileType fileType)	DPMBase
setFixedParticles(unsigned int n)	DPMBase	protected
setGravity(Vec3D newGravity)	DPMBase
setHGridCellOverSizeRatio(Mdouble cellOverSizeRatio)	MercuryBase
setHGridDistribution(HGridDistribution hGridDistribution)	MercuryBase
setHGridMaxLevels(unsigned int HGridMaxLevels)	MercuryBase
setHGridMethod(HGridMethod hGridMethod)	MercuryBase
setHGridUpdateEachTimeStep(bool updateEachTimeStep)	MercuryBase
setInteractionsWriteVTK(bool)	DPMBase
setIsPinned(std::function< bool(SolidNode *, unsigned)> isPinned)	SolidProblem< ELEMENT_TYPE >	inline
setLastSavedTimeStep(unsigned int nextSavedTimeStep)	DPMBase
setLogarithmicSaveCount(Mdouble logarithmicSaveCountBase)	DPMBase
setMax(const Vec3D &max)	DPMBase
setMax(Mdouble, Mdouble, Mdouble)	DPMBase
setMaxNewtonIterations(unsigned Max_newton_iterations)	SolidProblem< ELEMENT_TYPE >	inline
setMeanVelocity(Vec3D V_mean_goal)	DPMBase
setMeanVelocityAndKineticEnergy(Vec3D V_mean_goal, Mdouble Ek_goal)	DPMBase
setMin(const Vec3D &min)	DPMBase
setMin(Mdouble, Mdouble, Mdouble)	DPMBase
setName(std::string name)	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
Mercury3D::setName(const std::string &name)	DPMBase
Mercury3D::setName(const char *name)	DPMBase
SolidProblem::setName(const std::string &name)	SolidProblem< ELEMENT_TYPE >	inline
setNewtonSolverTolerance(double Newton_solver_tolerance)	SolidProblem< ELEMENT_TYPE >	inline
setNToWrite(int nToWrite)	DPMBase
setNumberOfDomains(std::vector< unsigned > direction)	DPMBase
setNumberOfOMPThreads(int numberOfOMPThreads)	DPMBase
setOomphGravity(double gravity)	SolidProblem< ELEMENT_TYPE >	inline
setOomphTimeStep(double dt)	SolidProblem< ELEMENT_TYPE >	inline
setOpenMode(std::fstream::openmode openMode)	DPMBase
setParticleDimensions(unsigned int particleDimensions)	DPMBase
setParticlesWriteVTK(bool writeParticlesVTK)	DPMBase
setPoissonRatio(double poissonRatio)	SolidProblem< ELEMENT_TYPE >	inline
setRestarted(bool newRestartedFlag)	DPMBase
setRestartVersion(std::string newRV)	DPMBase
setRotation(bool rotation)	DPMBase	inline
setRunNumber(int runNumber)	DPMBase
setSaveCount(unsigned int saveCount)	DPMBase
setSoftStop()	DPMBase	private
setSolidCubicMesh(const unsigned &nx, const unsigned &ny, const unsigned &nz, const double &xMin, const double &xMax, const double &yMin, const double &yMax, const double &zMin, const double &zMax)	SolidProblem< ELEMENT_TYPE >	inline
setSolidFeelsParticles(bool val)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
setSuperquadricParticlesWriteVTK(bool writeSuperquadricParticlesVTK)	DPMBase
setSystemDimensions(unsigned int newDim)	DPMBase
setTime(Mdouble time)	DPMBase
setTimeMax(Mdouble newTMax)	DPMBase
setTimeStep(Mdouble newDt)	DPMBase
setup_base_mesh_info_after_pruning()	oomph::Problem	private
setup_element_count_per_dof()	oomph::Problem	protected
setupInitialConditions()	DPMBase	virtual
setupRefinementParameters(const double &min_error_target, const double &max_error_target, Z2ErrorEstimator *&error_estimator_pt)	SolidProblem< ELEMENT_TYPE >	inline
setVTKOutputDirectory(const std::string &dir)	DPMBase
setWallsWriteVTK(FileType writeWallsVTK)	DPMBase
setWallsWriteVTK(bool)	DPMBase
setWritePythonFileForVTKVisualisation(bool forceWritePythonFileForVTKVisualisation)	DPMBase
setXBallsAdditionalArguments(std::string newXBArgs)	DPMBase
setXBallsColourMode(int newCMode)	DPMBase
setXBallsScale(Mdouble newScale)	DPMBase
setXBallsVectorScale(double newVScale)	DPMBase
setXMax(Mdouble newXMax)	DPMBase
setXMin(Mdouble newXMin)	DPMBase
setYMax(Mdouble newYMax)	DPMBase
setYMin(Mdouble newYMin)	DPMBase
setZMax(Mdouble newZMax)	DPMBase
setZMin(Mdouble newZMin)	DPMBase
shift_time_values()	oomph::Problem	virtual
Shut_up_in_newton_solve	oomph::Problem
sign_of_jacobian()	oomph::Problem	inline
Sign_of_jacobian	oomph::Problem	protected
signalHandler(int signal)	DPMBase	privatestatic
Solid_mesh_pt	SolidProblem< ELEMENT_TYPE >	protected
solid_mesh_pt()	SolidProblem< ELEMENT_TYPE >	inline
solid_mesh_pt() const	SolidProblem< ELEMENT_TYPE >	inline
solidFeelsParticles_	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	private
SolidProblem()	SolidProblem< ELEMENT_TYPE >	inline
solve()	DPMBase
solve(int argc, char *argv[])	DPMBase
solve_eigenproblem(const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, Vector< DoubleVector > &eigenvector, const bool &steady=true)	oomph::Problem
solve_eigenproblem(const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, const bool &steady=true)	oomph::Problem	inline
solveMercury(unsigned long nt)	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
solveOomph(int max_adapt=0)	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
solveSteady(const unsigned &max_adapt=0)	SolidProblem< ELEMENT_TYPE >	inline
solveSurfaceCoupling(const unsigned max_adapt=0)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
solveSurfaceCoupling(unsigned nStep, const unsigned max_adapt)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
solveSurfaceCouplingFixedSolid()	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
solveSurfaceCouplingForgiving(unsigned nStep, double timeMaxMin=-constants::inf, const unsigned max_adapt=0)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
solveUnsteady(double timeMax, double dt, unsigned saveCount=10, const unsigned &max_adapt=0)	SolidProblem< ELEMENT_TYPE >	inline
solveUnsteadyForgiving(double timeMax, double timeMaxMin, double dt, unsigned saveCount=10)	SolidProblem< ELEMENT_TYPE >	inline
sparse_assemble_row_or_column_compressed(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag)	oomph::Problem	protectedvirtual
sparse_assemble_row_or_column_compressed_with_lists(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag)	oomph::Problem	privatevirtual
sparse_assemble_row_or_column_compressed_with_maps(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag)	oomph::Problem	privatevirtual
sparse_assemble_row_or_column_compressed_with_two_arrays(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag)	oomph::Problem	privatevirtual
sparse_assemble_row_or_column_compressed_with_two_vectors(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag)	oomph::Problem	privatevirtual
sparse_assemble_row_or_column_compressed_with_vectors_of_pairs(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag)	oomph::Problem	privatevirtual
Sparse_assemble_with_arrays_allocation_increment	oomph::Problem	protected
Sparse_assemble_with_arrays_initial_allocation	oomph::Problem	protected
Sparse_assemble_with_arrays_previous_allocation	oomph::Problem	protected
Sparse_assembly_method	oomph::Problem	protected
SpatialErrorEstimatorFctPt typedef	oomph::Problem
SpatialErrorEstimatorWithDocFctPt typedef	oomph::Problem
speciesHandler	DPMBase
splitDomain(DomainSplit domainSplit)	DPMBase
statFile	DPMBase
steady_newton_solve(unsigned const &max_adapt=0)	oomph::Problem
store_current_dof_values()	oomph::Problem
Store_local_dof_pt_in_elements	oomph::Problem	private
Sub_mesh_pt	oomph::Problem	private
Suppress_warning_about_actions_before_read_unstructured_meshes	oomph::Problem	static
symmetrise_eigenfunction_for_adaptive_pitchfork_tracking()	oomph::Problem	virtual
synchroniseParticle(BaseParticle *, unsigned fromProcessor=0)	DPMBase	protected
systemDimensions_	DPMBase	private
Theta_squared	oomph::Problem	protected
time()	oomph::Problem	virtual
time() const	oomph::Problem
time_	DPMBase	private
Time_adaptive_newton_crash_on_solve_fail	oomph::Problem	protected
time_adaptive_newton_crash_on_solve_fail()	oomph::Problem	inline
Time_pt	oomph::Problem	private
time_pt()	oomph::Problem	inline
time_pt() const	oomph::Problem	inlinevirtual
Time_stepper_pt	oomph::Problem	private
time_stepper_pt()	oomph::Problem	inline
time_stepper_pt() const	oomph::Problem	inline
time_stepper_pt(const unsigned &i)	oomph::Problem	inline
timeMax_	DPMBase	private
timeStep_	DPMBase	private
Timestep_reduction_factor_after_nonconvergence	oomph::Problem	protected
totalCurrentMaxRelativeDisplacement_	MercuryBase	private
Traction_mesh_pt	SolidProblem< ELEMENT_TYPE >	protected
traction_mesh_pt()	SolidProblem< ELEMENT_TYPE >	inline
traction_mesh_pt() const	SolidProblem< ELEMENT_TYPE >	inline
triangleWalls_	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	private
unrefine_uniformly()	oomph::Problem
unrefine_uniformly(const unsigned &i_mesh)	oomph::Problem
unset_analytic_dparameter(double *const &parameter_pt)	oomph::Problem	inline
unset_analytic_hessian_products()	oomph::Problem	inline
unsteady_newton_solve(const double &dt)	oomph::Problem
unsteady_newton_solve(const double &dt, const bool &shift_values)	oomph::Problem
unsteady_newton_solve(const double &dt, const unsigned &max_adapt, const bool &first, const bool &shift=true)	oomph::Problem
updateDPMWallsFromFiniteElems()	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
updateEachTimeStep_	MercuryBase	private
updateGhostGrid(BaseParticle *P)	DPMBase
updateTractionOnFiniteElems()	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
updateTriangleWall(TriangleWall *&wall, std::array< Vec3D, 3 > vertex)	SCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
Use_continuation_timestepper	oomph::Problem	protected
Use_finite_differences_for_continuation_derivatives	oomph::Problem	protected
Use_globally_convergent_newton_method	oomph::Problem	private
use_predictor_values_as_initial_guess()	oomph::Problem	inline
Use_predictor_values_as_initial_guess	oomph::Problem	private
useCGMapping()	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inline
userHGridCellSize(unsigned int level)	MercuryBase	virtual
vtkWriter_	DPMBase	private
wallDetailsVTKWriter_	DPMBase	private
wallHandler	DPMBase
wallVTKWriter_	DPMBase	private
write(std::ostream &os, bool writeAllParticles=true) const override	MercuryBase	virtual
writeDataFile()	DPMBase
writeEneFile()	DPMBase
writeEneHeader(std::ostream &os) const override	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inlinevirtual
writeEneTimeStep(std::ostream &os) const override	BaseCoupling< Mercury3D, SolidProblem< SCoupledElement< ELEMENT > > >	inlinevirtual
writeFStatFile()	DPMBase
writeFstatHeader(std::ostream &os) const	DPMBase	protectedvirtual
writeOutputFiles()	DPMBase	virtual
writeParticlesVTK_	DPMBase	private
writePythonFileForVTKVisualisation() const	DPMBase
writeRestartFile()	DPMBase	virtual
writeSuperquadricParticlesVTK_	DPMBase	private
writeToVTK()	SolidProblem< ELEMENT_TYPE >	inline
writeVTKFiles() const	DPMBase	protected
writeXBallsScript() const	DPMBase	virtual
X_MAX enum value	SolidProblem< ELEMENT_TYPE >
X_MIN enum value	SolidProblem< ELEMENT_TYPE >
xBallsAdditionalArguments_	DPMBase	private
xBallsColourMode_	DPMBase	private
xBallsScale_	DPMBase	private
xBallsVectorScale_	DPMBase	private
Y_MAX enum value	SolidProblem< ELEMENT_TYPE >
Y_MIN enum value	SolidProblem< ELEMENT_TYPE >
Z_MAX enum value	SolidProblem< ELEMENT_TYPE >
Z_MIN enum value	SolidProblem< ELEMENT_TYPE >
~DPMBase()	DPMBase	virtual
~ExplicitTimeSteppableObject()	oomph::ExplicitTimeSteppableObject	inlinevirtual
~MercuryBase() override	MercuryBase
~Problem()	oomph::Problem	virtual