Member BaseHandler< T >::writeVTK () const

Now the VTK-writers have their own classes, and are called from DPMBase.

Member BaseParticle::oldRead (std::istream &is)

Should be gone in Mercury 2.0. Use BaseParticle::read() instead.

Member BaseParticle::setIndSpecies (unsigned int indSpecies) override

Please use setSpecies(const ParticleSpecies*) instead.

Member BaseParticle::setMass (Mdouble mass)

Please do not set the mass yourself, but use ParticleSpecies->computeMass instead. That makes sure

Member BaseWall::setIndSpecies (unsigned int indSpecies) override

TW: this function should be taken out and replaced by setSpecies

Member Coil::oldRead (std::istream &is)

If you have old restart files, please convert them to the current version of the restart files and use read(std::istream&) instead of oldRead(std::istream&).

Class CylindricalWall

This class will be gone in Mercury 2.0, use AxisymmetricIntersectionOfWalls instead.

Member DeletionBoundary::oldRead (std::istream &is)

Should be gone by Mercury 2.0. Use DeletionBoundary::read() instead.

Member DPMBase::getDataFile ()

dataFile is now protected, so it can be used by all applications. Please don't use getDataFile() anymore.

Member DPMBase::getDataFile () const

dataFile is now protected, so it can be used by all applications. Please don't use getDataFile() anymore.

Member DPMBase::getEneFile ()

eneFile is now protected, so it can be used by all applications. Please don't use getEneFile() anymore.

Member DPMBase::getEneFile () const

eneFile is now protected, so it can be used by all applications. Please don't use getEneFile() anymore.

Member DPMBase::getFStatFile () const

fStatFile is now protected, so it can be used by all applications. Please don't use getFStatFile() anymore.

Member DPMBase::getFStatFile ()

fStatFile is now protected, so it can be used by all applications. Please don't use getFStatFile() anymore.

Member DPMBase::getRestartFile () const

restartFile is now protected, so it can be used by all applications. Please don't use getRestartFile() anymore.

Member DPMBase::getRestartFile ()

restartFile is now protected, so it can be used by all applications. Please don't use getRestartFile() anymore.

Member DPMBase::getStatFile ()

statFile is now protected, so it can be used by all applications. Please don't use getStatFile() anymore.

Member DPMBase::getStatFile () const

statFile is now protected, so it can be used by all applications. Please don't use getStatFile() anymore.

Member DPMBase::getWallsWriteVTK () const

Use wallHandler.getWriteVTK() instead (since 21-07-2021)

Member DPMBase::readOld (std::istream &is)

Use read or the new magic driver instead

Member DPMBase::setInteractionsWriteVTK (bool)

Use interactionHandler.setWriteVTK(bool) instead (since 21-07-2021)

Member DPMBase::setWallsWriteVTK (FileType writeWallsVTK)

Use wallHandler.setWriteVTK(FileType) instead (since 21-07-2021)

Member DPMBase::setWallsWriteVTK (bool)

Use wallHandler.setWriteVTK(bool) instead (since 21-07-2021)

Member DPMBase::setXMax (Mdouble newXMax)

Member DPMBase::setXMin (Mdouble newXMin)

Member DPMBase::setYMax (Mdouble newYMax)

Member DPMBase::setYMin (Mdouble newYMin)

Member DPMBase::setZMax (Mdouble newZMax)

Member DPMBase::setZMin (Mdouble newZMin)

Member Eigen::Aligned

Synonym for Aligned16.

Member Eigen::AlignedBit

Member Eigen::AlignedBox< Scalar_, AmbientDim_ >::Index

since Eigen 3.3

Member Eigen::AlignedBox< Scalar_, AmbientDim_ >::isNull () const

use isEmpty()

Member Eigen::AlignedBox< Scalar_, AmbientDim_ >::setNull ()

use setEmpty()

Member Eigen::AlignedScaling2d

Member Eigen::AlignedScaling2f

Member Eigen::AlignedScaling3d

Member Eigen::AlignedScaling3f

Member Eigen::BDCSVD< MatrixType_, Options_ >::BDCSVD (Index rows, Index cols, unsigned int computationOptions)

Will be removed in the next major Eigen version. Options should be specified in the Options template parameter.

Member Eigen::BDCSVD< MatrixType_, Options_ >::BDCSVD (const MatrixType &matrix, unsigned int computationOptions)

Will be removed in the next major Eigen version. Options should be specified in the Options template parameter.

Member Eigen::BDCSVD< MatrixType_, Options_ >::compute (const MatrixType &matrix, unsigned int computationOptions)

Will be removed in the next major Eigen version. Options should be specified in the Options template parameter.

Member Eigen::ComplexEigenSolver< MatrixType_ >::Index

since Eigen 3.3

Member Eigen::ComplexSchur< MatrixType_ >::Index

since Eigen 3.3

Member Eigen::DenseBase< Derived >::flagged () const

it now returns *this

Member Eigen::DenseBase< Derived >::lazyAssign (const DenseBase< OtherDerived > &other)

Member Eigen::DenseBase< Derived >::LinSpaced (Sequential_t, const Scalar &low, const Scalar &high)

because of accuracy loss. In Eigen 3.3, it is an alias for LinSpaced(const Scalar&,const Scalar&)

Member Eigen::DenseBase< Derived >::LinSpaced (Sequential_t, Index size, const Scalar &low, const Scalar &high)

because of accuracy loss. In Eigen 3.3, it is an alias for LinSpaced(Index,const Scalar&,const Scalar&)

Member Eigen::DenseBase< Derived >::SequentialLinSpacedReturnType

Represents a vector with linearly spaced coefficients that allows sequential access only.

Member Eigen::EigenSolver< MatrixType_ >::Index

since Eigen 3.3

Member Eigen::EvalBeforeAssigningBit

means the expression should be evaluated before any assignment

Member Eigen::GeneralizedEigenSolver< MatrixType_ >::Index

since Eigen 3.3

Member Eigen::HessenbergDecomposition< MatrixType_ >::Index

since Eigen 3.3

Member Eigen::Hyperplane< Scalar_, AmbientDim_, Options_ >::Index

since Eigen 3.3

Member Eigen::internal::UpperBidiagonalization< MatrixType_ >::Index

since Eigen 3.3

Member Eigen::JacobiSVD< MatrixType_, Options_ >::compute (const MatrixType &matrix, unsigned int computationOptions)

Will be removed in the next major Eigen version. Options should be specified in the Options template parameter.

Member Eigen::JacobiSVD< MatrixType_, Options_ >::JacobiSVD (const MatrixType &matrix, unsigned int computationOptions)

Will be removed in the next major Eigen version. Options should be specified in the Options template parameter.

Member Eigen::JacobiSVD< MatrixType_, Options_ >::JacobiSVD (Index rows, Index cols, unsigned int computationOptions)

Will be removed in the next major Eigen version. Options should be specified in the Options template parameter.

Member Eigen::ParametrizedLine< Scalar_, AmbientDim_, Options_ >::Index

since Eigen 3.3

Member Eigen::ParametrizedLine< Scalar_, AmbientDim_, Options_ >::intersection (const Hyperplane< Scalar_, AmbientDim_, OtherOptions > &hyperplane) const

use intersectionParameter()

Member Eigen::RealQZ< MatrixType_ >::Index

since Eigen 3.3

Member Eigen::RealSchur< MatrixType_ >::Index

since Eigen 3.3

Member Eigen::SelfAdjointEigenSolver< MatrixType_ >::Index

since Eigen 3.3

Class Eigen::SimplicialCholesky< MatrixType_, UpLo_, Ordering_ >

use SimplicialLDLT or class SimplicialLLT

Member Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::_data () const

use data()

Member Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::_data ()

use data()

Member Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::endFill ()

use finalize()

Member Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::fill (Index i)

use insertBack(Index)

Member Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::fill (Index r, Index c)

use insertBack(Index,Index)

Member Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::fillrand (Index i)

use insert(Index)

Member Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::fillrand (Index r, Index c)

use insert(Index,Index)

Member Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::startFill (Index reserve)

use setZero() and reserve()

Member Eigen::Stride< OuterStrideAtCompileTime_, InnerStrideAtCompileTime_ >::Index

since Eigen 3.3

Member Eigen::Transform< Scalar_, Dim_, Mode_, Options_ >::Index

since Eigen 3.3

Member Eigen::TranspositionsBase< Derived >::Index

since Eigen 3.3

Member Eigen::TriangularViewImpl< MatrixType_, Mode_, Dense >::lazyAssign (const TriangularBase< OtherDerived > &other)

Member Eigen::TriangularViewImpl< MatrixType_, Mode_, Dense >::lazyAssign (const MatrixBase< OtherDerived > &other)

Member Eigen::TriangularViewImpl< MatrixType_, Mode_, Dense >::swap (MatrixBase< OtherDerived > const &other)

Member Eigen::Tridiagonalization< MatrixType_ >::Index

since Eigen 3.3

Member Eigen::VectorwiseOp< ExpressionType, Direction >::Index

since Eigen 3.3

Member FluxBoundary::oldRead (std::istream &is)

Should be gone by Mercury 2.0. Use FluxBoundary::read() instead.

Member helpers::compare (std::istream &is, const std::string &s)

Member InfiniteWall::set (Vec3D normal, Mdouble position)

InfiniteWall::set(Vec3D, Mdouble) is deprecated. Use set(Vec3D, Vec3D) instead.

In Mercury 2, the user will have to use the new interface, namely set(Vec3D, Vec3D).

Class InfiniteWallWithHole

Use AxisymmetricIntersectionOfWalls instead.

Member IntersectionOfWalls::addObject (Vec3D normal, Mdouble position)

Don't use this function, instead use the function addObject(Vec3D, Vec3D).

Member logWriteAndDie (const std::string &module, std::string message)

Member Multipole::addMultipoleCoefficients (NumericalVector< std::complex< Mdouble >> multipoleExpansionCoefficients)

Remove this function; it should not be required anymore:

Member PeriodicBoundary::oldRead (std::istream &is)

Should be gone by Mercury 2.0. Instead, use CubeInsertionBoundary::read().

Member PolydisperseInsertionBoundary::PolydisperseInsertionBoundary ()

Should be gone by Mercury 2.0. Instead, use the PSD class.

Member PSD::convertProbabilityDensityNumberDistributionToProbabilityDensityVolumeDistribution ()

Use convertProbabilityDensityNumberDistributionToProbabilityDensity(TYPE::PROBABILITYDENSITY_VOLUME_DISTRIBUTION) instead.

Member PSD::cutoffAndSqueezeCumulative (Mdouble quantileMin, Mdouble quantileMax, Mdouble squeeze, Mdouble minPolydispersity=0.1)

Instead use cutoffAndSqueezeCumulativeDistribution(TYPE::CUMULATIVE_NUMBER_DISTRIBUTION, quantileMin, quantileMax, squeeze, minPolydispersity)

Member PSD::cutoffCumulativeNumber (Mdouble quantileMin, Mdouble quantileMax, Mdouble minPolydispersity=0.1)

Instead use cutoffCumulativeDistribution(PSD::TYPE::CUMULATIVE_NUMBER_DISTRIBUTION, quantileMin, quantileMax, minPolydispersity)

Member PSD::setParticleSizeDistribution (std::vector< DistributionElements >)

Use setPSDFromVector() instead.

Member SmallMatrix< numberOfRows, numberOfColumns >::getNRows () const

Does not conform naming convention, please use getNumberOfRows instead.