#include <stored_shape_function_elements.h>

Inheritance diagram for oomph::StorableShapeSolidElementBase:

Public Member Functions
	StorableShapeSolidElementBase ()
	Constructor: Set defaults: Nothing is stored. More...

virtual	~StorableShapeSolidElementBase ()
	Destructor to clean up any allocated memory. More...

	StorableShapeSolidElementBase (const StorableShapeSolidElementBase &)=delete
	Broken copy constructor. More...

void	operator= (const StorableShapeSolidElementBase &)=delete
	Broken assignment operator. More...

void	delete_all_dshape_lagrangian_stored ()

void	delete_dshape_lagrangian_stored ()

void	delete_d2shape_lagrangian_stored ()

void	delete_J_lagrangian_stored ()

void	set_integration_scheme (Integral *const &integral_pt)

Vector< DShape * > *&	dshape_lagrangian_stored_pt ()

Vector< DShape * > *const &	dshape_lagrangian_stored_pt () const

Vector< DShape * > *&	d2shape_lagrangian_stored_pt ()

Vector< DShape * > *const &	d2shape_lagrangian_stored_pt () const

Vector< double > *&	jacobian_lagrangian_stored_pt ()

Vector< double > *const &	jacobian_lagrangian_stored_pt () const

void	pre_compute_dshape_lagrangian_at_knots ()

double	dshape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi) const

void	pre_compute_d2shape_lagrangian_at_knots ()

double	d2shape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const

void	set_dshape_lagrangian_stored_from_element (StorableShapeSolidElementBase *const &element_pt)

Public Member Functions inherited from oomph::StorableShapeElementBase
	StorableShapeElementBase ()
	Constructor, set most storage pointers to NULL. More...

virtual	~StorableShapeElementBase ()

	StorableShapeElementBase (const StorableShapeElementBase &)=delete
	Broken copy constructor. More...

void	operator= (const StorableShapeElementBase &)=delete
	Broken assignment operator. More...

void	delete_all_shape_local_stored ()

void	delete_shape_local_stored ()
	Delete stored shape functions. More...

void	delete_dshape_local_stored ()

void	delete_d2shape_local_stored ()

void	delete_all_dshape_eulerian_stored ()

void	delete_dshape_eulerian_stored ()
	Delete stored derivatives w.r.t. Eulerian coordinates. More...

void	delete_d2shape_eulerian_stored ()
	Delete stored 2nd derivatives w.r.t. Eulerian coordinates. More...

void	delete_J_eulerian_stored ()

Vector< Shape * > *&	shape_stored_pt ()

Vector< Shape * > *const &	shape_stored_pt () const

Shape *&	shape_stored_pt (const unsigned &ipt)

Shape *const &	shape_stored_pt (const unsigned &ipt) const

Vector< DShape * > *&	dshape_local_stored_pt ()

Vector< DShape * > *const &	dshape_local_stored_pt () const

Vector< DShape * > *&	d2shape_local_stored_pt ()

Vector< DShape * > *const &	d2shape_local_stored_pt () const

Vector< DShape * > *&	dshape_eulerian_stored_pt ()

Vector< DShape * > *const &	dshape_eulerian_stored_pt () const

Vector< DShape * > *&	d2shape_eulerian_stored_pt ()

Vector< DShape * > *const &	d2shape_eulerian_stored_pt () const

Vector< double > *&	jacobian_eulerian_stored_pt ()

Vector< double > *const &	jacobian_eulerian_stored_pt () const

void	set_shape_local_stored_from_element (StorableShapeElementBase *const &element_pt)

void	set_dshape_eulerian_stored_from_element (StorableShapeElementBase *const &element_pt)

void	pre_compute_shape_at_knots ()

void	shape_at_knot (const unsigned &ipt, Shape &psi) const

void	pre_compute_dshape_local_at_knots ()

void	dshape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids) const

void	pre_compute_d2shape_local_at_knots ()

void	d2shape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids, DShape &d2psids) const

void	pre_compute_J_eulerian_at_knots ()

double	J_eulerian_at_knot (const unsigned &ipt) const

void	pre_compute_dshape_eulerian_at_knots ()

double	dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx) const

void	pre_compute_d2shape_eulerian_at_knots ()

double	d2shape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, DShape &d2psidx) const

Public Member Functions inherited from oomph::FiniteElement
void	set_dimension (const unsigned &dim)

void	set_nodal_dimension (const unsigned &nodal_dim)

void	set_nnodal_position_type (const unsigned &nposition_type)
	Set the number of types required to interpolate the coordinate. More...

void	set_n_node (const unsigned &n)

int	nodal_local_eqn (const unsigned &n, const unsigned &i) const

double	dJ_eulerian_at_knot (const unsigned &ipt, Shape &psi, DenseMatrix< double > &djacobian_dX) const

	FiniteElement ()
	Constructor. More...

virtual	~FiniteElement ()

	FiniteElement (const FiniteElement &)=delete
	Broken copy constructor. More...

virtual bool	local_coord_is_valid (const Vector< double > &s)
	Broken assignment operator. More...

virtual void	move_local_coord_back_into_element (Vector< double > &s) const

void	get_centre_of_gravity_and_max_radius_in_terms_of_zeta (Vector< double > &cog, double &max_radius) const

virtual void	local_coordinate_of_node (const unsigned &j, Vector< double > &s) const

virtual void	local_fraction_of_node (const unsigned &j, Vector< double > &s_fraction)

virtual double	local_one_d_fraction_of_node (const unsigned &n1d, const unsigned &i)

MacroElement *	macro_elem_pt ()
	Access function to pointer to macro element. More...

void	get_x (const Vector< double > &s, Vector< double > &x) const

void	get_x (const unsigned &t, const Vector< double > &s, Vector< double > &x)

virtual void	get_x_from_macro_element (const Vector< double > &s, Vector< double > &x) const

virtual void	get_x_from_macro_element (const unsigned &t, const Vector< double > &s, Vector< double > &x)

Integral *const &	integral_pt () const
	Return the pointer to the integration scheme (const version) More...

virtual void	shape (const Vector< double > &s, Shape &psi) const =0

virtual void	dshape_local (const Vector< double > &s, Shape &psi, DShape &dpsids) const

virtual void	d2shape_local (const Vector< double > &s, Shape &psi, DShape &dpsids, DShape &d2psids) const

virtual double	J_eulerian (const Vector< double > &s) const

void	check_J_eulerian_at_knots (bool &passed) const

void	check_jacobian (const double &jacobian) const

double	dshape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx) const

virtual double	dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsi, DenseMatrix< double > &djacobian_dX, RankFourTensor< double > &d_dpsidx_dX) const

double	d2shape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx, DShape &d2psidx) const

virtual void	assign_nodal_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	describe_nodal_local_dofs (std::ostream &out, const std::string &current_string) const

Node *&	node_pt (const unsigned &n)
	Return a pointer to the local node n. More...

Node *const &	node_pt (const unsigned &n) const
	Return a pointer to the local node n (const version) More...

unsigned	nnode () const
	Return the number of nodes. More...

virtual unsigned	nnode_1d () const

double	raw_nodal_position (const unsigned &n, const unsigned &i) const

double	raw_nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const

double	raw_dnodal_position_dt (const unsigned &n, const unsigned &i) const

double	raw_dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const

double	raw_nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const

double	nodal_position (const unsigned &n, const unsigned &i) const

double	nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const

double	dnodal_position_dt (const unsigned &n, const unsigned &i) const
	Return the i-th component of nodal velocity: dx/dt at local node n. More...

double	dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const

double	nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const

double	dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const

double	dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const

virtual void	get_dresidual_dnodal_coordinates (RankThreeTensor< double > &dresidual_dnodal_coordinates)

virtual void	disable_ALE ()

virtual void	enable_ALE ()

virtual unsigned	required_nvalue (const unsigned &n) const

unsigned	nnodal_position_type () const

bool	has_hanging_nodes () const

unsigned	nodal_dimension () const
	Return the required Eulerian dimension of the nodes in this element. More...

virtual unsigned	nvertex_node () const

virtual Node *	vertex_node_pt (const unsigned &j) const

int	get_node_number (Node *const &node_pt) const

virtual Node *	get_node_at_local_coordinate (const Vector< double > &s) const

double	raw_nodal_value (const unsigned &n, const unsigned &i) const

double	raw_nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const

double	nodal_value (const unsigned &n, const unsigned &i) const

double	nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const

unsigned	dim () const

virtual ElementGeometry::ElementGeometry	element_geometry () const
	Return the geometry type of the element (either Q or T usually). More...

virtual double	interpolated_x (const Vector< double > &s, const unsigned &i) const
	Return FE interpolated coordinate x[i] at local coordinate s. More...

virtual double	interpolated_x (const unsigned &t, const Vector< double > &s, const unsigned &i) const

virtual void	interpolated_x (const Vector< double > &s, Vector< double > &x) const
	Return FE interpolated position x[] at local coordinate s as Vector. More...

virtual void	interpolated_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) const

virtual double	interpolated_dxdt (const Vector< double > &s, const unsigned &i, const unsigned &t)

virtual void	interpolated_dxdt (const Vector< double > &s, const unsigned &t, Vector< double > &dxdt)

void	position (const Vector< double > &zeta, Vector< double > &r) const

void	position (const unsigned &t, const Vector< double > &zeta, Vector< double > &r) const

void	dposition_dt (const Vector< double > &zeta, const unsigned &t, Vector< double > &drdt)

void	interpolated_zeta (const Vector< double > &s, Vector< double > &zeta) const

void	locate_zeta (const Vector< double > &zeta, GeomObject *&geom_object_pt, Vector< double > &s, const bool &use_coordinate_as_initial_guess=false)

virtual void	node_update ()

virtual void	identify_field_data_for_interactions (std::set< std::pair< Data *, unsigned >> &paired_field_data)

virtual double	s_min () const
	Min value of local coordinate. More...

virtual double	s_max () const
	Max. value of local coordinate. More...

double	size () const

virtual double	compute_physical_size () const

virtual void	point_output_data (const Vector< double > &s, Vector< double > &data)

void	point_output (std::ostream &outfile, const Vector< double > &s)

virtual unsigned	nplot_points_paraview (const unsigned &nplot) const

virtual unsigned	nsub_elements_paraview (const unsigned &nplot) const

void	output_paraview (std::ofstream &file_out, const unsigned &nplot) const

virtual void	write_paraview_output_offset_information (std::ofstream &file_out, const unsigned &nplot, unsigned &counter) const

virtual void	write_paraview_type (std::ofstream &file_out, const unsigned &nplot) const

virtual void	write_paraview_offsets (std::ofstream &file_out, const unsigned &nplot, unsigned &offset_sum) const

virtual unsigned	nscalar_paraview () const

virtual void	scalar_value_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot) const

virtual void	scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const

virtual void	scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const

virtual std::string	scalar_name_paraview (const unsigned &i) const

virtual void	output (std::ostream &outfile)

virtual void	output (std::ostream &outfile, const unsigned &n_plot)

virtual void	output (const unsigned &t, std::ostream &outfile, const unsigned &n_plot) const

virtual void	output (FILE *file_pt)

virtual void	output (FILE *file_pt, const unsigned &n_plot)

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt)
	Output an exact solution over the element. More...

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt)
	Output a time-dependent exact solution over the element. More...

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, const SolutionFunctorBase &exact_soln) const
	Output a time-dependent exact solution over the element. More...

virtual void	get_s_plot (const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const

virtual std::string	tecplot_zone_string (const unsigned &nplot) const

virtual void	write_tecplot_zone_footer (std::ostream &outfile, const unsigned &nplot) const

virtual void	write_tecplot_zone_footer (FILE *file_pt, const unsigned &nplot) const

virtual unsigned	nplot_points (const unsigned &nplot) const

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)
	Calculate the norm of the error and that of the exact solution. More...

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
	Calculate the norm of the error and that of the exact solution. More...

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_abs_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error)

void	integrate_fct (FiniteElement::SteadyExactSolutionFctPt integrand_fct_pt, Vector< double > &integral)
	Integrate Vector-valued function over element. More...

void	integrate_fct (FiniteElement::UnsteadyExactSolutionFctPt integrand_fct_pt, const double &time, Vector< double > &integral)
	Integrate Vector-valued time-dep function over element. More...

virtual void	build_face_element (const int &face_index, FaceElement *face_element_pt)

virtual unsigned	self_test ()

virtual unsigned	get_bulk_node_number (const int &face_index, const unsigned &i) const

virtual int	face_outer_unit_normal_sign (const int &face_index) const
	Get the sign of the outer unit normal on the face given by face_index. More...

virtual unsigned	nnode_on_face () const

void	face_node_number_error_check (const unsigned &i) const
	Range check for face node numbers. More...

virtual CoordinateMappingFctPt	face_to_bulk_coordinate_fct_pt (const int &face_index) const

virtual BulkCoordinateDerivativesFctPt	bulk_coordinate_derivatives_fct_pt (const int &face_index) const

Public Member Functions inherited from oomph::GeneralisedElement
	GeneralisedElement ()
	Constructor: Initialise all pointers and all values to zero. More...

virtual	~GeneralisedElement ()
	Virtual destructor to clean up any memory allocated by the object. More...

	GeneralisedElement (const GeneralisedElement &)=delete
	Broken copy constructor. More...

void	operator= (const GeneralisedElement &)=delete
	Broken assignment operator. More...

Data *&	internal_data_pt (const unsigned &i)
	Return a pointer to i-th internal data object. More...

Data *const &	internal_data_pt (const unsigned &i) const
	Return a pointer to i-th internal data object (const version) More...

Data *&	external_data_pt (const unsigned &i)
	Return a pointer to i-th external data object. More...

Data *const &	external_data_pt (const unsigned &i) const
	Return a pointer to i-th external data object (const version) More...

unsigned long	eqn_number (const unsigned &ieqn_local) const

int	local_eqn_number (const unsigned long &ieqn_global) const

unsigned	add_external_data (Data *const &data_pt, const bool &fd=true)

bool	external_data_fd (const unsigned &i) const

void	exclude_external_data_fd (const unsigned &i)

void	include_external_data_fd (const unsigned &i)

void	flush_external_data ()
	Flush all external data. More...

void	flush_external_data (Data *const &data_pt)
	Flush the object addressed by data_pt from the external data array. More...

unsigned	ninternal_data () const
	Return the number of internal data objects. More...

unsigned	nexternal_data () const
	Return the number of external data objects. More...

unsigned	ndof () const
	Return the number of equations/dofs in the element. More...

void	dof_vector (const unsigned &t, Vector< double > &dof)
	Return the vector of dof values at time level t. More...

void	dof_pt_vector (Vector< double * > &dof_pt)
	Return the vector of pointers to dof values. More...

void	set_internal_data_time_stepper (const unsigned &i, TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

void	assign_internal_eqn_numbers (unsigned long &global_number, Vector< double * > &Dof_pt)

void	describe_dofs (std::ostream &out, const std::string &current_string) const

void	add_internal_value_pt_to_map (std::map< unsigned, double * > &map_of_value_pt)

virtual void	assign_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	complete_setup_of_dependencies ()

virtual void	get_residuals (Vector< double > &residuals)

virtual void	get_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)

virtual void	get_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)

virtual void	get_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)

virtual void	get_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)

virtual void	get_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)

virtual void	get_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)

virtual void	get_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)

virtual void	get_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)

virtual void	get_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)

virtual void	compute_norm (Vector< double > &norm)

virtual unsigned	ndof_types () const

virtual void	get_dof_numbers_for_unknowns (std::list< std::pair< unsigned long, unsigned >> &dof_lookup_list) const

Public Member Functions inherited from oomph::GeomObject
	GeomObject ()
	Default constructor. More...

	GeomObject (const unsigned &ndim)

	GeomObject (const unsigned &nlagrangian, const unsigned &ndim)

	GeomObject (const unsigned &nlagrangian, const unsigned &ndim, TimeStepper *time_stepper_pt)

	GeomObject (const GeomObject &dummy)=delete
	Broken copy constructor. More...

void	operator= (const GeomObject &)=delete
	Broken assignment operator. More...

virtual	~GeomObject ()
	(Empty) destructor More...

unsigned	nlagrangian () const
	Access function to # of Lagrangian coordinates. More...

unsigned	ndim () const
	Access function to # of Eulerian coordinates. More...

void	set_nlagrangian_and_ndim (const unsigned &n_lagrangian, const unsigned &n_dim)
	Set # of Lagrangian and Eulerian coordinates. More...

TimeStepper *&	time_stepper_pt ()

TimeStepper *	time_stepper_pt () const

virtual void	position (const double &t, const Vector< double > &zeta, Vector< double > &r) const

virtual void	dposition (const Vector< double > &zeta, DenseMatrix< double > &drdzeta) const

virtual void	d2position (const Vector< double > &zeta, RankThreeTensor< double > &ddrdzeta) const

virtual void	d2position (const Vector< double > &zeta, Vector< double > &r, DenseMatrix< double > &drdzeta, RankThreeTensor< double > &ddrdzeta) const

Public Member Functions inherited from oomph::SolidFiniteElement
void	set_lagrangian_dimension (const unsigned &lagrangian_dimension)

virtual bool	has_internal_solid_data ()

	SolidFiniteElement ()
	Constructor: Set defaults. More...

virtual	~SolidFiniteElement ()
	Destructor to clean up any allocated memory. More...

	SolidFiniteElement (const SolidFiniteElement &)=delete
	Broken copy constructor. More...

unsigned	ngeom_data () const
	Broken assignment operator. More...

Data *	geom_data_pt (const unsigned &j)

void	identify_geometric_data (std::set< Data * > &geometric_data_pt)

double	zeta_nodal (const unsigned &n, const unsigned &k, const unsigned &i) const

virtual void	get_x_and_xi (const Vector< double > &s, Vector< double > &x_fe, Vector< double > &x, Vector< double > &xi_fe, Vector< double > &xi) const

virtual void	set_macro_elem_pt (MacroElement *macro_elem_pt)

virtual void	set_macro_elem_pt (MacroElement macro_elem_pt, MacroElement undeformed_macro_elem_pt)

void	set_undeformed_macro_elem_pt (MacroElement *undeformed_macro_elem_pt)

MacroElement *	undeformed_macro_elem_pt ()
	Access function to pointer to "undeformed" macro element. More...

double	dshape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi) const

double	d2shape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const

unsigned	lagrangian_dimension () const

unsigned	nnodal_lagrangian_type () const

Node *	construct_node (const unsigned &n)
	Construct the local node n and return a pointer to it. More...

Node *	construct_node (const unsigned &n, TimeStepper *const &time_stepper_pt)

Node *	construct_boundary_node (const unsigned &n)

Node *	construct_boundary_node (const unsigned &n, TimeStepper *const &time_stepper_pt)

virtual void	assign_all_generic_local_eqn_numbers (const bool &store_local_dof_pt)

void	describe_local_dofs (std::ostream &out, const std::string &current_string) const

double	raw_lagrangian_position (const unsigned &n, const unsigned &i) const

double	raw_lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	lagrangian_position (const unsigned &n, const unsigned &i) const
	Return i-th Lagrangian coordinate at local node n. More...

double	lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

virtual double	interpolated_xi (const Vector< double > &s, const unsigned &i) const

virtual void	interpolated_xi (const Vector< double > &s, Vector< double > &xi) const

virtual void	interpolated_dxids (const Vector< double > &s, DenseMatrix< double > &dxids) const

virtual void	J_lagrangian (const Vector< double > &s) const

virtual double	J_lagrangian_at_knot (const unsigned &ipt) const

SolidInitialCondition *&	solid_ic_pt ()
	Pointer to object that describes the initial condition. More...

void	enable_solve_for_consistent_newmark_accel ()

void	disable_solve_for_consistent_newmark_accel ()
	Set to reset the problem being solved to be the standard problem. More...

MultiplierFctPt &	multiplier_fct_pt ()

MultiplierFctPt	multiplier_fct_pt () const

virtual void	get_residuals_for_solid_ic (Vector< double > &residuals)

void	fill_in_residuals_for_solid_ic (Vector< double > &residuals)

void	fill_in_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_jacobian_for_newmark_accel (DenseMatrix< double > &jacobian)

void	compute_norm (double &el_norm)

int	position_local_eqn (const unsigned &n, const unsigned &k, const unsigned &j) const

Private Attributes
Vector< DShape * > *	DShape_lagrangian_stored_pt

Vector< DShape * > *	D2Shape_lagrangian_stored_pt

Vector< double > *	Jacobian_lagrangian_stored_pt

bool	Can_delete_dshape_lagrangian_stored

Additional Inherited Members
Public Types inherited from oomph::FiniteElement
typedef void(*	SteadyExactSolutionFctPt) (const Vector< double > &, Vector< double > &)

typedef void(*	UnsteadyExactSolutionFctPt) (const double &, const Vector< double > &, Vector< double > &)

Public Types inherited from oomph::SolidFiniteElement
typedef double(*	MultiplierFctPt) (const Vector< double > &xi)

Static Public Attributes inherited from oomph::FiniteElement
static double	Tolerance_for_singular_jacobian = 1.0e-16
	Tolerance below which the jacobian is considered singular. More...

static bool	Accept_negative_jacobian = false

static bool	Suppress_output_while_checking_for_inverted_elements

Static Public Attributes inherited from oomph::GeneralisedElement
static bool	Suppress_warning_about_repeated_internal_data

static bool	Suppress_warning_about_repeated_external_data = true

static double	Default_fd_jacobian_step = 1.0e-8

Protected Member Functions inherited from oomph::FiniteElement
virtual void	assemble_local_to_eulerian_jacobian (const DShape &dpsids, DenseMatrix< double > &jacobian) const

virtual void	assemble_local_to_eulerian_jacobian2 (const DShape &d2psids, DenseMatrix< double > &jacobian2) const

virtual void	assemble_eulerian_base_vectors (const DShape &dpsids, DenseMatrix< double > &interpolated_G) const

template<unsigned DIM>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual double	invert_jacobian_mapping (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual double	local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

double	local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const

virtual double	local_to_eulerian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual void	dJ_eulerian_dnodal_coordinates (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<unsigned DIM>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

virtual void	d_dshape_eulerian_dnodal_coordinates (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<unsigned DIM>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

virtual void	transform_derivatives (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const

void	transform_derivatives_diagonal (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const

virtual void	transform_second_derivatives (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<unsigned DIM>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<unsigned DIM>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

virtual void	fill_in_jacobian_from_nodal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_jacobian_from_nodal_by_fd (DenseMatrix< double > &jacobian)

virtual void	update_before_nodal_fd ()

virtual void	reset_after_nodal_fd ()

virtual void	update_in_nodal_fd (const unsigned &i)

virtual void	reset_in_nodal_fd (const unsigned &i)

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	Zero-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	One-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	Two-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

Protected Member Functions inherited from oomph::GeneralisedElement
unsigned	add_internal_data (Data *const &data_pt, const bool &fd=true)

bool	internal_data_fd (const unsigned &i) const

void	exclude_internal_data_fd (const unsigned &i)

void	include_internal_data_fd (const unsigned &i)

void	clear_global_eqn_numbers ()

void	add_global_eqn_numbers (std::deque< unsigned long > const &global_eqn_numbers, std::deque< double * > const &global_dof_pt)

virtual void	assign_internal_and_external_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	assign_additional_local_eqn_numbers ()

int	internal_local_eqn (const unsigned &i, const unsigned &j) const

int	external_local_eqn (const unsigned &i, const unsigned &j)

virtual void	fill_in_contribution_to_residuals (Vector< double > &residuals)

void	fill_in_jacobian_from_internal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_internal_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_external_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_external_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

virtual void	update_before_internal_fd ()

virtual void	reset_after_internal_fd ()

virtual void	update_in_internal_fd (const unsigned &i)

virtual void	reset_in_internal_fd (const unsigned &i)

virtual void	update_before_external_fd ()

virtual void	reset_after_external_fd ()

virtual void	update_in_external_fd (const unsigned &i)

virtual void	reset_in_external_fd (const unsigned &i)

virtual void	fill_in_contribution_to_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)

virtual void	fill_in_contribution_to_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)

virtual void	fill_in_contribution_to_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)

virtual void	fill_in_contribution_to_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)

virtual void	fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)

virtual void	fill_in_contribution_to_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)

virtual void	fill_in_contribution_to_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)

virtual void	fill_in_contribution_to_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)

Protected Member Functions inherited from oomph::SolidFiniteElement
void	fill_in_generic_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)

void	set_nnodal_lagrangian_type (const unsigned &nlagrangian_type)

virtual double	local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

double	local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const

virtual double	local_to_lagrangian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual void	assign_solid_local_eqn_numbers (const bool &store_local_dof)
	Assign local equation numbers for the solid equations in the element. More...

void	describe_solid_local_dofs (std::ostream &out, const std::string &current_string) const
	Classifies dofs locally for solid specific aspects. More...

void	fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)

virtual void	fill_in_jacobian_from_solid_position_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_jacobian_from_solid_position_by_fd (DenseMatrix< double > &jacobian)

virtual void	update_before_solid_position_fd ()

virtual void	reset_after_solid_position_fd ()

virtual void	update_in_solid_position_fd (const unsigned &i)

virtual void	reset_in_solid_position_fd (const unsigned &i)

Protected Attributes inherited from oomph::FiniteElement
MacroElement *	Macro_elem_pt
	Pointer to the element's macro element (NULL by default) More...

Protected Attributes inherited from oomph::GeomObject
unsigned	NLagrangian
	Number of Lagrangian (intrinsic) coordinates. More...

unsigned	Ndim
	Number of Eulerian coordinates. More...

TimeStepper *	Geom_object_time_stepper_pt

Protected Attributes inherited from oomph::SolidFiniteElement
MacroElement *	Undeformed_macro_elem_pt
	Pointer to the element's "undeformed" macro element (NULL by default) More...

SolidInitialCondition *	Solid_ic_pt
	Pointer to object that specifies the initial condition. More...

bool	Solve_for_consistent_newmark_accel_flag

Static Protected Attributes inherited from oomph::FiniteElement
static const unsigned	Default_Initial_Nvalue = 0
	Default value for the number of values at a node. More...

static const double	Node_location_tolerance = 1.0e-14

static const unsigned	N2deriv [] = {0, 1, 3, 6}

Static Protected Attributes inherited from oomph::GeneralisedElement
static DenseMatrix< double >	Dummy_matrix

static std::deque< double * >	Dof_pt_deque

Detailed Description

Base class for solid elements that allow storage of precomputed shape functions and their derivatives w.r.t to the local and global (Lagrangian) coordinates at the element's integration points.

Constructor & Destructor Documentation

◆ StorableShapeSolidElementBase() [1/2]

oomph::StorableShapeSolidElementBase::StorableShapeSolidElementBase ( )

inline

Constructor: Set defaults: Nothing is stored.

       : StorableShapeElementBase(),
         SolidFiniteElement(),
         DShape_lagrangian_stored_pt(0),
         D2Shape_lagrangian_stored_pt(0),
         Jacobian_lagrangian_stored_pt(0),
         Can_delete_dshape_lagrangian_stored(true)
     {
     }

◆ ~StorableShapeSolidElementBase()

virtual oomph::StorableShapeSolidElementBase::~StorableShapeSolidElementBase ( )

inlinevirtual

Destructor to clean up any allocated memory.

     {
       delete_all_dshape_lagrangian_stored();
     }

References delete_all_dshape_lagrangian_stored().

◆ StorableShapeSolidElementBase() [2/2]

oomph::StorableShapeSolidElementBase::StorableShapeSolidElementBase ( const StorableShapeSolidElementBase & )

delete

Broken copy constructor.

Member Function Documentation

◆ d2shape_lagrangian_at_knot()

double oomph::StorableShapeSolidElementBase::d2shape_lagrangian_at_knot	(	const unsigned &	ipt,
		Shape &	psi,
		DShape &	dpsidxi,
		DShape &	d2psidxi
	)		const

virtual

Return the geometric shape functions and also first and second derivatives w.r.t. Lagrangian coordinates at the ipt-th integration point. If the values have been pre-computed, they will be used. Returns Jacobian of mapping from Lagrangian to local coordinates.

Compute the geometric shape functions, first and second derivatives w.r.t Lagrangian coordinates at the ipt-th integration point. If the values have already been computed, return the stored values.

Reimplemented from oomph::SolidFiniteElement.

   {
     // If we are not storing the values return the calculated values
     if (D2Shape_lagrangian_stored_pt == 0)
     {
       return SolidFiniteElement::d2shape_lagrangian_at_knot(
         ipt, psi, dpsidxi, d2psidxi);
     }
     else
     {
       // Set the internal values of the pointers in the Shape objects
       psi = shape_stored_pt(ipt);
       dpsidxi = (*DShape_lagrangian_stored_pt)[ipt];
       d2psidxi = (*D2Shape_lagrangian_stored_pt)[ipt];
  
       // Return the stored value of the jacobian
       return ((*Jacobian_lagrangian_stored_pt)[ipt]);
     }
   }

References oomph::SolidFiniteElement::d2shape_lagrangian_at_knot(), D2Shape_lagrangian_stored_pt, Jacobian_lagrangian_stored_pt, and oomph::StorableShapeElementBase::shape_stored_pt().

◆ d2shape_lagrangian_stored_pt() [1/2]

Vector<DShape*>*& oomph::StorableShapeSolidElementBase::d2shape_lagrangian_stored_pt ( )

inline

Return a pointer to the vector of pointers to the stored second derivatives of the shape functions w.r.t the global (eulerian) coordinates

     {
       return D2Shape_lagrangian_stored_pt;
     }

References D2Shape_lagrangian_stored_pt.

Referenced by set_dshape_lagrangian_stored_from_element().

◆ d2shape_lagrangian_stored_pt() [2/2]

Vector<DShape*>* const& oomph::StorableShapeSolidElementBase::d2shape_lagrangian_stored_pt ( ) const

inline

Return a pointer to the vector of pointers to the stored second derivatives of the shape functions w.r.t the global (eulerian) coordinates (const version)

     {
       return D2Shape_lagrangian_stored_pt;
     }

References D2Shape_lagrangian_stored_pt.

◆ delete_all_dshape_lagrangian_stored()

void oomph::StorableShapeSolidElementBase::delete_all_dshape_lagrangian_stored ( )

Delete all the objects stored in the [...]_lagrangian_stored_pt vectors and delete the vectors themselves

//////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////// Delete all the objects and storage associated with stored derivatives of shape functions with respect to Lagrangian coordinates

   {
     delete_dshape_lagrangian_stored();
     delete_d2shape_lagrangian_stored();
     delete_J_lagrangian_stored();
   }

References delete_d2shape_lagrangian_stored(), delete_dshape_lagrangian_stored(), and delete_J_lagrangian_stored().

Referenced by set_dshape_lagrangian_stored_from_element(), and ~StorableShapeSolidElementBase().

◆ delete_d2shape_lagrangian_stored()

void oomph::StorableShapeSolidElementBase::delete_d2shape_lagrangian_stored ( )

Delete stored second derivatives of shape functions w.r.t. Lagrangian coordinates

Delete all the objects stored in the vectors: D2Shape_lagrangian_stored

   {
     // If storage has been allocated
     if ((Can_delete_dshape_lagrangian_stored) && (D2Shape_lagrangian_stored_pt))
     {
       // Now find the number of entries in the second vector
       unsigned n_intpt = D2Shape_lagrangian_stored_pt->size();
       // Loop over the entries in reverse and delete them
       for (unsigned ipt = n_intpt; ipt > 0; ipt--)
       {
         delete (*D2Shape_lagrangian_stored_pt)[ipt - 1];
         (*D2Shape_lagrangian_stored_pt)[ipt - 1] = 0;
       }
       // Delete the actual vector
       delete D2Shape_lagrangian_stored_pt;
     }
     // Reset the pointer to zero
     D2Shape_lagrangian_stored_pt = 0;
   }

References Can_delete_dshape_lagrangian_stored, and D2Shape_lagrangian_stored_pt.

Referenced by delete_all_dshape_lagrangian_stored(), and pre_compute_d2shape_lagrangian_at_knots().

◆ delete_dshape_lagrangian_stored()

void oomph::StorableShapeSolidElementBase::delete_dshape_lagrangian_stored ( )

Delete all the objects stored in the Lagrangian_stored vectors

Delete all the objects stored in the vectors: DShape_lagrangian_stored

   {
     // If storage has been allocated
     if ((Can_delete_dshape_lagrangian_stored) && (DShape_lagrangian_stored_pt))
     {
       // Find the number of entries in the shape function storage vector
       unsigned n_intpt = DShape_lagrangian_stored_pt->size();
       // Loop over the entries of the vectors, in reverse and delete them
       for (unsigned ipt = n_intpt; ipt > 0; ipt--)
       {
         delete (*DShape_lagrangian_stored_pt)[ipt - 1];
         (*DShape_lagrangian_stored_pt)[ipt - 1] = 0;
       }
       // Delete the actual vector
       delete DShape_lagrangian_stored_pt;
     }
     // Reset the pointer to zero
     DShape_lagrangian_stored_pt = 0;
   }

References Can_delete_dshape_lagrangian_stored, and DShape_lagrangian_stored_pt.

Referenced by delete_all_dshape_lagrangian_stored(), pre_compute_d2shape_lagrangian_at_knots(), and pre_compute_dshape_lagrangian_at_knots().

◆ delete_J_lagrangian_stored()

void oomph::StorableShapeSolidElementBase::delete_J_lagrangian_stored ( )

Delete stored Jaocbian of mapping between local and Lagrangian coordinates

Delete the stored Jacobian of the mapping between the Lagrangian and local coordinates.

   {
     // If we allocated the storage, delete it
     if (Can_delete_dshape_lagrangian_stored)
     {
       // Delete the stored Jacobian
       delete Jacobian_lagrangian_stored_pt;
     }
     // Reset the pointer to zero
     Jacobian_lagrangian_stored_pt = 0;
   }

References Can_delete_dshape_lagrangian_stored, and Jacobian_lagrangian_stored_pt.

Referenced by delete_all_dshape_lagrangian_stored(), pre_compute_d2shape_lagrangian_at_knots(), and pre_compute_dshape_lagrangian_at_knots().

◆ dshape_lagrangian_at_knot()

double oomph::StorableShapeSolidElementBase::dshape_lagrangian_at_knot	(	const unsigned &	ipt,
		Shape &	psi,
		DShape &	dpsidxi
	)		const

virtual

Return the geometric shape functions and also first derivatives w.r.t. Lagrangian coordinates at ipt-th integration point. If the values of the shape function and derivatives have been pre-computed, they will be used.

Compute the geometric shape functions, and derivatives w.r.t Lagrangian coordinates at the ipt-th integration point. If the values have already been computed, return the stored values.

Reimplemented from oomph::SolidFiniteElement.

   {
     // If we are not storing the values, return the calculated values
     if (DShape_lagrangian_stored_pt == 0)
     {
       return SolidFiniteElement::dshape_lagrangian_at_knot(ipt, psi, dpsidxi);
     }
     else
     {
       // Set the internal pointers in the shape functions
       psi = shape_stored_pt(ipt);
       dpsidxi = (*DShape_lagrangian_stored_pt)[ipt];
  
       // Return the stored value of the jacobian
       return ((*Jacobian_lagrangian_stored_pt)[ipt]);
     }
   }

References oomph::SolidFiniteElement::dshape_lagrangian_at_knot(), DShape_lagrangian_stored_pt, Jacobian_lagrangian_stored_pt, and oomph::StorableShapeElementBase::shape_stored_pt().

◆ dshape_lagrangian_stored_pt() [1/2]

Vector<DShape*>*& oomph::StorableShapeSolidElementBase::dshape_lagrangian_stored_pt ( )

inline

Return a pointer to the vector of pointers to the stored first derivatives of the shape functions w.r.t the global (eulerian) coordinates

     {
       return DShape_lagrangian_stored_pt;
     }

References DShape_lagrangian_stored_pt.

Referenced by set_dshape_lagrangian_stored_from_element().

◆ dshape_lagrangian_stored_pt() [2/2]

Vector<DShape*>* const& oomph::StorableShapeSolidElementBase::dshape_lagrangian_stored_pt ( ) const

inline

Return a pointer to the vector of pointers to the stored first derivatives of the shape functions w.r.t the global (eulerian) coordinates (const version)

     {
       return DShape_lagrangian_stored_pt;
     }

References DShape_lagrangian_stored_pt.

◆ jacobian_lagrangian_stored_pt() [1/2]

Vector<double>*& oomph::StorableShapeSolidElementBase::jacobian_lagrangian_stored_pt ( )

inline

Return a pointer to the vector of Jacobians of the mapping between the local and global (eulerian) coordinates

     {
       return Jacobian_lagrangian_stored_pt;
     }

References Jacobian_lagrangian_stored_pt.

Referenced by set_dshape_lagrangian_stored_from_element().

◆ jacobian_lagrangian_stored_pt() [2/2]

Vector<double>* const& oomph::StorableShapeSolidElementBase::jacobian_lagrangian_stored_pt ( ) const

inline

Return a pointer to the vector of Jacobians of the mapping between the local and global (eulerian) coordinates (const version)

     {
       return Jacobian_lagrangian_stored_pt;
     }

References Jacobian_lagrangian_stored_pt.

◆ operator=()

void oomph::StorableShapeSolidElementBase::operator= ( const StorableShapeSolidElementBase & )

delete

Broken assignment operator.

◆ pre_compute_d2shape_lagrangian_at_knots()

void oomph::StorableShapeSolidElementBase::pre_compute_d2shape_lagrangian_at_knots ( )

Calculate the first and second derivatives of the shape functions w.r.t Lagrangian coordinates at the integration points and store the results internally

Calculate the values of the first and second derivatives of the shape functions at the integration points and store in the internal storage of the element

   {
     // Pre-compute the basic shape functions
     pre_compute_shape_at_knots();
  
     // Find the number of nodes
     unsigned n_node = nnode();
     // Get the number of position types and the dimension from first node
     // N.B. Assume that it is the same for all nodes
     unsigned n_lagrangian_type =
       static_cast<SolidNode*>(node_pt(0))->nlagrangian_type();
     unsigned n_lagrangian = static_cast<SolidNode*>(node_pt(0))->nlagrangian();
  
     // Find the number of second derivatives required
     // N.B. We are assuming that the mixed derivatives are symmetric here
     unsigned n_deriv = 0;
     switch (n_lagrangian)
     {
       case 1:
         n_deriv = 1;
         break;
       case 2:
         n_deriv = 3;
         break;
       case 3:
         n_deriv = 6;
         break;
       default:
         oomph_info << "Really more than 3 dimensions?" << std::endl;
         break;
     }
  
     // Delete the existing objects, if there are any
     delete_J_lagrangian_stored();
     delete_dshape_lagrangian_stored();
     delete_d2shape_lagrangian_stored();
     // We are in charge of deleting again
     Can_delete_dshape_lagrangian_stored = true;
  
     // Allocate storage for the stored shape function derivatives
     DShape_lagrangian_stored_pt = new Vector<DShape*>;
     D2Shape_lagrangian_stored_pt = new Vector<DShape*>;
     Jacobian_lagrangian_stored_pt = new Vector<double>;
  
     // Assign local variables for the shape function and derivatives
     Shape psi(n_node, n_lagrangian_type);
     DShape dpsidxi(n_node, n_lagrangian_type, n_lagrangian);
     DShape d2psidxi(n_node, n_lagrangian_type, n_deriv);
  
     // Loop over the integration points
     unsigned n_intpt = integral_pt()->nweight();
     for (unsigned ipt = 0; ipt < n_intpt; ipt++)
     {
       // Get the values of the shape function and derivatives at the
       // integration point and assign the value of the Jacobian to the
       // internally stored vector
       Jacobian_lagrangian_stored_pt->push_back(
         SolidFiniteElement::d2shape_lagrangian_at_knot(
           ipt, psi, dpsidxi, d2psidxi));
  
       // Set up local storage for the shape function derivatives
       DShape* dpsidxi_pt = new DShape(n_node, n_lagrangian_type, n_lagrangian);
       DShape* d2psidxi_pt = new DShape(n_node, n_lagrangian_type, n_deriv);
  
       // Now copy the values over
       for (unsigned l = 0; l < n_node; l++)
       {
         for (unsigned k = 0; k < n_lagrangian_type; k++)
         {
           // First derivatives
           for (unsigned i = 0; i < n_lagrangian; i++)
           {
             (*dpsidxi_pt)(l, k, i) = dpsidxi(l, k, i);
           }
  
           // Second derivatives
           for (unsigned i = 0; i < n_deriv; i++)
           {
             (*d2psidxi_pt)(l, k, i) = d2psidxi(l, k, i);
           }
         }
       }
  
       // Add the pointers to the shape function derivatives to the internal
       // storage
       DShape_lagrangian_stored_pt->push_back(dpsidxi_pt);
       D2Shape_lagrangian_stored_pt->push_back(d2psidxi_pt);
     } // End of loop over the shape functions
   }

References Can_delete_dshape_lagrangian_stored, oomph::SolidFiniteElement::d2shape_lagrangian_at_knot(), D2Shape_lagrangian_stored_pt, delete_d2shape_lagrangian_stored(), delete_dshape_lagrangian_stored(), delete_J_lagrangian_stored(), DShape_lagrangian_stored_pt, i, oomph::FiniteElement::integral_pt(), Jacobian_lagrangian_stored_pt, k, oomph::GeomObject::nlagrangian(), oomph::FiniteElement::nnode(), oomph::FiniteElement::node_pt(), oomph::Integral::nweight(), oomph::oomph_info, and oomph::StorableShapeElementBase::pre_compute_shape_at_knots().

Referenced by set_integration_scheme().

◆ pre_compute_dshape_lagrangian_at_knots()

void oomph::StorableShapeSolidElementBase::pre_compute_dshape_lagrangian_at_knots ( )

Calculate the first derivatives of the shape functions w.r.t Lagrangian coordinates at the integration points and store the results internally.

Calculate the values of the derivatives of the shape functions at the integration points and store in the internal storage of the element

   {
     // Pre-compute the basic shape functions
     pre_compute_shape_at_knots();
  
     // Find the number of nodes
     unsigned n_node = nnode();
     // Get the number of position types and the dimension from first node
     // N.B. Assume that it is the same for all nodes
     unsigned n_lagrangian_type =
       static_cast<SolidNode*>(node_pt(0))->nlagrangian_type();
     unsigned n_lagrangian = static_cast<SolidNode*>(node_pt(0))->nlagrangian();
  
     // Delete the exisiting stored objects
     delete_J_lagrangian_stored();
     delete_dshape_lagrangian_stored();
     // Now we're in charge of deletion again
     Can_delete_dshape_lagrangian_stored = true;
  
     // Allocate storage for the stored shape function derivatives
     DShape_lagrangian_stored_pt = new Vector<DShape*>;
     Jacobian_lagrangian_stored_pt = new Vector<double>;
  
     // Assign local variables for the shape function and derivatives
     Shape psi(n_node, n_lagrangian_type);
     DShape dpsidxi(n_node, n_lagrangian_type, n_lagrangian);
  
     // Loop over the integration points
     unsigned n_intpt = integral_pt()->nweight();
     for (unsigned ipt = 0; ipt < n_intpt; ipt++)
     {
       // Get the values of the shape function and derivatives at the
       // integration point and add to the value of the Jacobian to the
       // internally stored vector
       Jacobian_lagrangian_stored_pt->push_back(
         SolidFiniteElement::dshape_lagrangian_at_knot(ipt, psi, dpsidxi));
  
       // Set up local storage for the shape function derivatives
       DShape* dpsidxi_pt = new DShape(n_node, n_lagrangian_type, n_lagrangian);
  
       // Now copy the values over
       for (unsigned l = 0; l < n_node; l++)
       {
         for (unsigned k = 0; k < n_lagrangian_type; k++)
         {
           // First derivatives
           for (unsigned i = 0; i < n_lagrangian; i++)
           {
             (*dpsidxi_pt)(l, k, i) = dpsidxi(l, k, i);
           }
         }
       }
  
       // Add the pointer to the vector of stored DShape objects
       DShape_lagrangian_stored_pt->push_back(dpsidxi_pt);
     } // End of loop over integration points
   }

References Can_delete_dshape_lagrangian_stored, delete_dshape_lagrangian_stored(), delete_J_lagrangian_stored(), oomph::SolidFiniteElement::dshape_lagrangian_at_knot(), DShape_lagrangian_stored_pt, i, oomph::FiniteElement::integral_pt(), Jacobian_lagrangian_stored_pt, k, oomph::GeomObject::nlagrangian(), oomph::FiniteElement::nnode(), oomph::FiniteElement::node_pt(), oomph::Integral::nweight(), and oomph::StorableShapeElementBase::pre_compute_shape_at_knots().

Referenced by set_integration_scheme().

◆ set_dshape_lagrangian_stored_from_element()

void oomph::StorableShapeSolidElementBase::set_dshape_lagrangian_stored_from_element ( StorableShapeSolidElementBase *const & element_pt )

Set the derivatives of stored shape functions with respect to the lagrangian coordinates to be the same as those pointed to by the FiniteElement element_pt. Note that this function also calls set_shape_local_stored_from_element(element_pt). so that the local derivatives are also stored. Calling this function only makes sense for uniformly-spaced meshes with elements of equal sizes.

Set the stored derivatives of shape functions w.r.t Lagrangian coordinates to be those stored in the StorableShapeElementBase pointed to by element_pt. Using this function will allow a saving in the storage required for integration schemes in the (most common) case when a large number of elements have the same integration scheme

   {
     set_shape_local_stored_from_element(element_pt);
  
     // Only do this if the referenced Shape objects are not already the same
     // Assume that if the stored shape functions are the same, the rest will be
     if (DShape_lagrangian_stored_pt !=
         element_pt->dshape_lagrangian_stored_pt())
     {
       // Delete the existing data
       delete_all_dshape_lagrangian_stored();
       // Now this element can no longer delete the data pointed at by
       // the internal vectors
       Can_delete_dshape_lagrangian_stored = false;
  
       // Assign the pointers
       DShape_lagrangian_stored_pt = element_pt->dshape_lagrangian_stored_pt();
       D2Shape_lagrangian_stored_pt = element_pt->d2shape_lagrangian_stored_pt();
       Jacobian_lagrangian_stored_pt =
         element_pt->jacobian_lagrangian_stored_pt();
     }
   }

References Can_delete_dshape_lagrangian_stored, D2Shape_lagrangian_stored_pt, d2shape_lagrangian_stored_pt(), delete_all_dshape_lagrangian_stored(), DShape_lagrangian_stored_pt, dshape_lagrangian_stored_pt(), Jacobian_lagrangian_stored_pt, jacobian_lagrangian_stored_pt(), and oomph::StorableShapeElementBase::set_shape_local_stored_from_element().

◆ set_integration_scheme()

void oomph::StorableShapeSolidElementBase::set_integration_scheme ( Integral *const & integral_pt )

inlinevirtual

Overload the set_integration_scheme to recompute any stored derivatives w.r.t. Lagrangian coordinates

Reimplemented from oomph::StorableShapeElementBase.

     {
       StorableShapeElementBase::set_integration_scheme(integral_pt);
  
       // If we are storing Lagrangian first and second derivatives, recompute
       // them
       if (D2Shape_lagrangian_stored_pt != 0)
       {
         pre_compute_d2shape_lagrangian_at_knots();
       }
       // If we are storing Lagrangian first derivatives, recompute them
       else if (DShape_lagrangian_stored_pt != 0)
       {
         pre_compute_dshape_lagrangian_at_knots();
       }
     }

References D2Shape_lagrangian_stored_pt, DShape_lagrangian_stored_pt, oomph::FiniteElement::integral_pt(), pre_compute_d2shape_lagrangian_at_knots(), pre_compute_dshape_lagrangian_at_knots(), and oomph::StorableShapeElementBase::set_integration_scheme().

Referenced by oomph::StorableShapeSolidElement< ELEMENT >::StorableShapeSolidElement().

Member Data Documentation

◆ Can_delete_dshape_lagrangian_stored

bool oomph::StorableShapeSolidElementBase::Can_delete_dshape_lagrangian_stored

private

Boolean to determine whether the element can delete the stored shape function derivatives w.r.t. the Lagrangian coordinate

Referenced by delete_d2shape_lagrangian_stored(), delete_dshape_lagrangian_stored(), delete_J_lagrangian_stored(), pre_compute_d2shape_lagrangian_at_knots(), pre_compute_dshape_lagrangian_at_knots(), and set_dshape_lagrangian_stored_from_element().

◆ D2Shape_lagrangian_stored_pt

Vector<DShape*>* oomph::StorableShapeSolidElementBase::D2Shape_lagrangian_stored_pt

private

Pointer to storage for the pointers to the second derivatives of the shape functions w.r.t. Lagrangian coordinates at integration points

Referenced by d2shape_lagrangian_at_knot(), d2shape_lagrangian_stored_pt(), delete_d2shape_lagrangian_stored(), pre_compute_d2shape_lagrangian_at_knots(), set_dshape_lagrangian_stored_from_element(), and set_integration_scheme().

◆ DShape_lagrangian_stored_pt

Vector<DShape*>* oomph::StorableShapeSolidElementBase::DShape_lagrangian_stored_pt

private

Pointer to storage for the pointers to the derivatives of the shape functions w.r.t. Lagrangian coordinates at integration points

Referenced by delete_dshape_lagrangian_stored(), dshape_lagrangian_at_knot(), dshape_lagrangian_stored_pt(), pre_compute_d2shape_lagrangian_at_knots(), pre_compute_dshape_lagrangian_at_knots(), set_dshape_lagrangian_stored_from_element(), and set_integration_scheme().

◆ Jacobian_lagrangian_stored_pt

Vector<double>* oomph::StorableShapeSolidElementBase::Jacobian_lagrangian_stored_pt

private

Pointer to storage for the Jacobian of the mapping between the local and the global Lagrangian coordinates

Referenced by d2shape_lagrangian_at_knot(), delete_J_lagrangian_stored(), dshape_lagrangian_at_knot(), jacobian_lagrangian_stored_pt(), pre_compute_d2shape_lagrangian_at_knots(), pre_compute_dshape_lagrangian_at_knots(), and set_dshape_lagrangian_stored_from_element().

The documentation for this class was generated from the following files:

Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ StorableShapeSolidElementBase() [1/2]

◆ ~StorableShapeSolidElementBase()

◆ StorableShapeSolidElementBase() [2/2]

Member Function Documentation

◆ d2shape_lagrangian_at_knot()

◆ d2shape_lagrangian_stored_pt() [1/2]

◆ d2shape_lagrangian_stored_pt() [2/2]

◆ delete_all_dshape_lagrangian_stored()

◆ delete_d2shape_lagrangian_stored()

◆ delete_dshape_lagrangian_stored()

◆ delete_J_lagrangian_stored()

◆ dshape_lagrangian_at_knot()

◆ dshape_lagrangian_stored_pt() [1/2]

◆ dshape_lagrangian_stored_pt() [2/2]

◆ jacobian_lagrangian_stored_pt() [1/2]

◆ jacobian_lagrangian_stored_pt() [2/2]

◆ operator=()

◆ pre_compute_d2shape_lagrangian_at_knots()

◆ pre_compute_dshape_lagrangian_at_knots()

◆ set_dshape_lagrangian_stored_from_element()

◆ set_integration_scheme()

Member Data Documentation

◆ Can_delete_dshape_lagrangian_stored

◆ D2Shape_lagrangian_stored_pt

◆ DShape_lagrangian_stored_pt

◆ Jacobian_lagrangian_stored_pt