MercuryDPM: BiCGSTAB_step_by_step.cpp File Reference

Functions
VectorXd	x (n)

VectorXd	b (n)

SparseMatrix< double >	A (n, n)

BiCGSTAB< SparseMatrix< double > >	solver (A)

solver	setMaxIterations (1)

Variables
int	n = 10000

	x = VectorXd::Random(n)

int	i = 0

	do

Function Documentation

◆ A()

SparseMatrix<double> A	(	n	,
		n
	)

◆ b()

VectorXd b ( n )

◆ setMaxIterations()

solver setMaxIterations ( 1 )

◆ solver()

BiCGSTAB<SparseMatrix<double> > solver ( A )

◆ x()

VectorXd x ( n )

Variable Documentation

◆ do

do

Initial value:

{

x = solver.solveWithGuess(b, x)

BiCGSTAB< SparseMatrix< double > > solver(A)

x

Definition: BiCGSTAB_step_by_step.cpp:7

VectorXd b(n)

◆ i

int i = 0

Examples: /home/plath/mercurydpm2/mercurydpm/Eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h.

Referenced by Eigen::HessenbergDecomposition< MatrixType_ >::_compute(), Eigen::SPQR< MatrixType_ >::_solve_impl(), Eigen::PastixBase< Derived >::_solve_impl(), Eigen::FullPivLU< MatrixType_, PermutationIndex_ >::_solve_impl(), Eigen::ColPivHouseholderQR< MatrixType_, PermutationIndex_ >::_solve_impl(), Eigen::FullPivHouseholderQR< MatrixType_, PermutationIndex_ >::_solve_impl(), Eigen::LDLT< MatrixType_, UpLo_ >::_solve_impl_transposed(), Eigen::FullPivLU< MatrixType_, PermutationIndex_ >::_solve_impl_transposed(), IcoSphere::_subdivide(), Eigen::internal::gemm_class< Scalar, is_unit_inc >::a_loads(), Eigen::accurateDot(), UnstructuredTorusProblem< ELEMENT >::actions_after_adapt(), PseudoElasticCollapsibleChannelProblem< FLUID_ELEMENT, SOLID_ELEMENT >::actions_after_adapt(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::actions_after_adapt(), UnstructuredSolidProblem< ELEMENT, MESH >::actions_after_adapt(), FallingBlockProblem< ELEMENT >::actions_after_adapt(), RisingBubbleProblem< ELEMENT >::actions_after_adapt(), DiskShockWaveProblem< ELEMENT, TIMESTEPPER >::actions_after_adapt(), DrivenCavityProblem< ELEMENT, MESH >::actions_after_adapt(), PseudoElasticCollapsibleChannelProblem< FLUID_ELEMENT, SOLID_ELEMENT >::actions_after_distribute(), TurekProblem< FLUID_ELEMENT, SOLID_ELEMENT >::actions_after_distribute(), oomph::IMRByBDF::actions_after_timestep(), MortaringValidationProblem< ELEMENT, NON_MORTAR_ELEMENT >::actions_before_adapt(), PseudoElasticCollapsibleChannelProblem< FLUID_ELEMENT, SOLID_ELEMENT >::actions_before_implicit_timestep(), PerturbedStateProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::actions_before_implicit_timestep(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::actions_before_newton_convergence_check(), TwoMeshFluxAdvectionDiffusionProblem< ELEMENT >::actions_before_newton_solve(), SUPGAdvectionDiffusionProblem< ELEMENT >::actions_before_newton_solve(), RectangularDrivenCavityProblem< ELEMENT >::actions_before_newton_solve(), PoissonProblem< ELEMENT >::actions_before_newton_solve(), MultiPoissonProblem< ELEMENT >::actions_before_newton_solve(), MovingBlockProblem< ELEMENT >::actions_before_newton_solve(), RefineableDrivenCavityProblem< ELEMENT >::actions_before_newton_solve(), QuarterCircleDrivenCavityProblem< ELEMENT >::actions_before_newton_solve(), PRefineableDrivenCavityProblem< ELEMENT >::actions_before_newton_solve(), RefineableTwoMeshFluxPoissonProblem< ELEMENT >::actions_before_newton_solve(), FluxPoissonMGProblem< ELEMENT, MESH >::actions_before_newton_solve(), QuarterCircleDrivenCavityProblem2< ELEMENT >::actions_before_newton_solve(), FpTestProblem::actions_before_newton_solve(), SpikedChannelSpineFlowProblem< ELEMENT >::actions_before_newton_solve(), FallingBlockProblem< ELEMENT >::actions_before_newton_solve(), RisingBubbleProblem< ELEMENT >::actions_before_newton_solve(), FluxPoissonProblem< ELEMENT >::actions_before_newton_solve(), TwoMeshFluxPoissonProblem< ELEMENT >::actions_before_newton_solve(), PrescribedBoundaryDisplacementProblem< ELEMENT >::actions_before_newton_solve(), DrivenCavityProblem< ELEMENT, MESH >::actions_before_newton_solve(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::actions_before_newton_solve(), oomph::StreamfunctionProblem::actions_before_solve(), oomph::IMRByBDF::actions_before_timestep(), ForceLawsMPI2Test::actionsAfterSolve(), HertzianBSHPInteractionTwoParticleElasticCollision::actionsAfterSolve(), SpeciesTest::actionsAfterSolve(), BaseCluster::actionsAfterSolve(), InteractionHandler::actionsAfterTimeStep(), ParticleHandler::actionsAfterTimeStep(), CFDDEMCoupleTest::actionsAfterTimeStep(), TwoByTwoMPIDomainMPI4Test::actionsAfterTimeStep(), VolumeCoupling::actionsAfterTimeStep(), HeatFluidCoupledSpecies< NormalForceSpecies >::actionsAfterTimeStep(), SolidBag::actionsBeforeOomphTimeStep(), ParticleHandler::actionsBeforeTimeStep(), LawinenBox::actionsBeforeTimeStep(), SmoothChute::actionsBeforeTimeStep(), ForceLawsMPI2Test::actionsBeforeTimeStep(), AngleOfRepose::actionsBeforeTimeStep(), MeltableForceLaw2SelfTest::actionsBeforeTimeStep(), MeltableForceLawSelfTest::actionsBeforeTimeStep(), ThermalConductionSelfTest::actionsBeforeTimeStep(), Chutebelt::actionsBeforeTimeStep(), QuaternionWallUnitTest::actionsBeforeTimeStep(), PeriodicWallsWithSlidingFrictionUnitTest::actionsBeforeTimeStep(), BrethertonElement< ELEMENT >::activate_inflow_dependency_on_external_data(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::actual_cos_contact_angle(), my_functor::actual_df(), oomph::RefineableGmshTetMesh< ELEMENT >::adapt(), oomph::Problem::adapt(), oomph::TreeBasedRefineableMeshBase::adapt_mesh(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::adapt_temporal_mesh(), oomph::Problem::adaptive_unsteady_newton_solve(), oomph::CRDoubleMatrix::add(), Eigen::DynamicSGroup::add(), oomph::FixedVolumeSpineLineMarangoniFluidInterfaceElement< ELEMENT >::add_additional_residual_contributions_interface(), oomph::SpineAxisymmetricMarangoniSurfactantFluidInterfaceElement< ELEMENT >::add_additional_residual_contributions_interface(), oomph::SpineLineMarangoniSurfactantFluidInterfaceElement< ELEMENT >::add_additional_residual_contributions_interface(), oomph::ElasticUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::add_additional_residual_contributions_interface(), oomph::SurfactantTransportInterfaceElement::add_additional_residual_contributions_interface(), oomph::TriangleMeshCurviLine::add_connection_point(), oomph::Data::add_copy(), FlowAroundCylinderProblem< ELEMENT >::add_eigenproblem(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::add_element_contribution_to_aux_integral(), oomph::SCoupledElement< ELEMENT >::add_external_coupling_forces_to_residuals(), oomph::GeneralisedElement::add_external_data(), SilbertPeriodic::add_flow_particles(), oomph::DGFaceElement::add_flux_contributions(), SSPorousChannelEquations::add_generic_residual_contribution(), SpineGravityTractionElement< ELEMENT >::add_generic_residual_contribution(), ModalPoissonEquations< DIM >::add_generic_residual_contribution(), oomph::GeneralisedElement::add_global_eqn_numbers(), oomph::ScaleCoupledElement< ELEMENT >::add_internal_coupling_forces_to_residuals(), oomph::VolumeCoupledElement< ELEMENT >::add_internal_coupling_forces_to_residuals(), oomph::GeneralisedElement::add_internal_data(), oomph::GeneralisedElement::add_internal_value_pt_to_map(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::add_line_interface_elements(), oomph::HangInfo::add_master_node_pt(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::add_mesh(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::add_outlet_bulk_elements(), Vreman::add_particles(), oomph::TriangleMeshParameters::add_region_coordinates(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::add_side_spinemesh(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::add_side_spinemesh(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::add_side_spinemesh(), oomph::Data::add_value_pt_to_map(), ChuteWithPeriodicInflow::AddContinuingBottom(), SolidProblem< ELEMENT_TYPE >::addDissipation(), oomph::SumOfMatrices::added_matrix_pt(), CGFields::StandardFields::addParticleStatistics(), Eigen::internal::addResults(), addResultsVSX(), TriangleMeshWall::addToMesh(), BaseWall::addToVTK(), Membrane::addVertex(), TriangleMeshWall::addZigZagDiagonalCells(), adjoint(), Membrane::adjustVertexParticleSize(), AirwayReopeningProblem< ELEMENT >::AirwayReopeningProblem(), Eigen::internal::BlasVectorMapper< Scalar, Index >::aligned(), alignedbox(), alignedboxNonIntegralRotatable(), alignedboxTranslatable(), oomph::YoungLaplaceEquations::allocate_vector_of_vectors(), Eigen::internal::amd_flip(), Eigen::internal::amd_unflip(), Eigen::SparseLU< MatrixType_, OrderingType_ >::analyzePattern(), AnnularDiskProblem< ELASTICITY_ELEMENT >::AnnularDiskProblem(), oomph::AnnularDomain::AnnularDomain(), oomph::BlockPreconditioner< MATRIX >::any_mesh_distributed(), Eigen::internal::CompressedStorage< Scalar_, StorageIndex_ >::append(), oomph::ProblemBasedShiftInvertOperator::apply(), Eigen::DynamicSGroup::apply(), BendingCantileverProblem< ELEMENT >::apply_boundary_conditions(), MovingBlockProblem< ELEMENT >::apply_boundary_conditions(), PMLStructuredCubicHelmholtz< ELEMENT >::apply_boundary_conditions(), NavierStokesProblem< ELEMENT >::apply_boundary_conditions(), VorticityRecoveryProblem< ELEMENT >::apply_boundary_conditions(), UnsteadyHeatProblem< ELEMENT >::apply_boundary_conditions(), TwoDDGProblem< ELEMENT >::apply_boundary_conditions(), TwoDDGProblem< ELEMENT >::apply_initial_conditions(), oomph::FSI_functions::apply_no_slip_on_moving_wall(), oomph::AugmentedProblemGMRES::apply_schur_complement_preconditioner(), Membrane::Edge::applyBendForce(), oomph::OomphLibPreconditionerEpetraOperator::ApplyInverse(), Membrane::applyPressure(), HGridOptimiser::applyStep(), Eigen::HouseholderSequence< VectorsType, CoeffsType, Side >::applyThisOnTheLeft(), Eigen::PermutationBase< Derived >::applyTranspositionOnTheLeft(), Eigen::PermutationBase< Derived >::applyTranspositionOnTheRight(), oomph::Problem::arc_length_step_solve(), oomph::Problem::arc_length_step_solve_helper(), Eigen::test::areApprox(), Eigen::test::areApproxAbs(), Eigen::test::areEqual(), array_complex(), Eigen::internal::array_prod(), array_real(), array_special_functions(), oomph::FiniteElement::assemble_eulerian_base_vectors(), oomph::RefineableElement::assemble_eulerian_base_vectors(), oomph::NavierStokesSchurComplementPreconditioner::assemble_inv_press_and_veloc_mass_matrix_diagonal(), oomph::FiniteElement::assemble_local_to_eulerian_jacobian(), oomph::RefineableElement::assemble_local_to_eulerian_jacobian(), oomph::FiniteElement::assemble_local_to_eulerian_jacobian2(), oomph::RefineableElement::assemble_local_to_eulerian_jacobian2(), oomph::SolidFiniteElement::assemble_local_to_lagrangian_jacobian(), oomph::RefineableSolidElement::assemble_local_to_lagrangian_jacobian(), oomph::SolidFiniteElement::assemble_local_to_lagrangian_jacobian2(), oomph::RefineableSolidElement::assemble_local_to_lagrangian_jacobian2(), oomph::PressureBasedSolidLSCPreconditioner::assemble_mass_matrix_diagonal(), oomph::ElementWithMovingNodes::assemble_set_of_all_geometric_data(), oomph::TetMeshBase::assess_mesh_quality(), QOrrSommerfeldElement< 1, NNODE_1D >::assign_additional_local_eqn_numbers(), SpineGravityTractionElement< ELEMENT >::assign_additional_local_eqn_numbers(), ModalPRefineableQPoissonElement< DIM >::assign_additional_local_eqn_numbers(), oomph::ElementWithMovingNodes::assign_all_generic_local_eqn_numbers(), oomph::Problem::assign_eqn_numbers(), oomph::Data::assign_eqn_numbers(), oomph::Node::assign_eqn_numbers(), oomph::ElementWithExternalElement::assign_external_interaction_data_local_eqn_numbers(), oomph::PerturbedSpineMesh::assign_global_eqn_numbers(), oomph::Mesh::assign_global_eqn_numbers(), oomph::SpineMesh::assign_global_spine_eqn_numbers(), oomph::Newmark< NSTEPS >::assign_initial_data_values(), oomph::Newmark< 2 >::assign_initial_data_values_stage1(), oomph::SelfStartingBDF2::assign_initial_positions_impulsive(), oomph::Steady< NSTEPS >::assign_initial_positions_impulsive(), oomph::Newmark< NSTEPS >::assign_initial_positions_impulsive(), oomph::BDF< NSTEPS >::assign_initial_positions_impulsive(), oomph::GeneralisedElement::assign_internal_and_external_local_eqn_numbers(), oomph::GeneralisedElement::assign_internal_eqn_numbers(), BrethertonElement< ELEMENT >::assign_local_eqn_numbers(), oomph::GeneralisedElement::assign_local_eqn_numbers(), oomph::Hijacked< ELEMENT >::assign_local_eqn_numbers(), oomph::Mesh::assign_local_eqn_numbers(), oomph::FiniteElement::assign_nodal_local_eqn_numbers(), VorticityRecoveryProblem< ELEMENT >::assign_synthetic_veloc_field(), UnsteadyHeatProblem< ELEMENT >::assign_time_slab_id(), NavierStokesProblem< ELEMENT >::assign_time_slice_id(), oomph::OneDLagrangianMesh< ELEMENT >::assign_undeformed_positions(), ShellMesh< ELEMENT >::assign_undeformed_positions(), FlatPlateMesh< ELEMENT >::assign_undeformed_positions(), oomph::CircularCylindricalShellMesh< ELEMENT >::assign_undeformed_positions(), oomph::StreamfunctionProblem::assign_velocities(), Eigen::PermutationBase< Derived >::assignProduct(), Eigen::PermutationBase< Derived >::assignTranspose(), oomph::AugmentedProblemGMRES::augmented_matrix_multiply(), statistics_while_running< T >::auto_set_domain(), statistics_while_running< T >::auto_set_z(), aux_evalSolver(), oomph::Multi_domain_functions::aux_setup_multi_domain_interaction(), oomph::EulerEquations< DIM >::average_gradient(), oomph::EulerEquations< DIM >::average_prim_value(), oomph::DGElement::average_value(), Eigen::internal::avx512_blend_mask(), AxisymFvKProblem< ELEMENT >::AxisymFvKProblem(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::AxisymmetricLinearElasticityTractionElement(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::AxisymmetricNavierStokesTractionElement(), AxisymmetricVibratingShellProblem< ELEMENT >::AxisymmetricVibratingShellProblem(), SmallMatrix< numberOfRows, numberOfColumns >::axpy(), SmallVector< numberOfRows >::axpy(), oomph::DenseLU::backsub(), oomph::SuperLUSolver::backsub_serial(), oomph::SuperLUSolver::backsub_transpose_serial(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::backup(), oomph::SolidICProblem::backup_original_state(), oomph::BackupMeshForProjection< GEOMETRIC_ELEMENT >::BackupMeshForProjection(), Eigen::internal::companion< Scalar_, Deg_ >::balance(), bandmatrix(), BaseStateProblem< BASE_ELEMENT >::BaseStateProblem(), basicStuff(), ModalPRefineableQElement< DIM >::basis(), Eigen::Spline< Scalar_, Dim_, Degree_ >::BasisFunctions(), bench(), bench_svd(), benchVec(), SolidBag::bendBag(), BendingCantileverProblem< ELEMENT >::BendingCantileverProblem(), CRBond_Bessel::bessjyna(), CRBond_Bessel::bessjynb(), Eigen::internal::bicgstab(), big_sparse_triplet(), oomph::StefanBoltzmannHelper::bin_helper(), RefineableBinArray::bin_pt(), Eigen::internal::bytewise_bitwise_helper< T >::binary(), oomph::BinaryTreeForest::binary_neigh_pt(), binary_op_test(), oomph::BinaryTreeForest::binary_tree_pt(), binom(), oomph::BlackBoxFDNewtonSolver::black_box_fd_newton_solve(), Global_Parameters::blended_grad_velocity_pseudo_singularity_for_couette(), Global_Parameters::blended_velocity_pseudo_singularity_for_couette(), block(), Eigen::TensorEvaluator< const TensorChippingOp< DimId, ArgType >, Device >::block(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::block(), Eigen::TensorEvaluator< const TensorGeneratorOp< Generator, ArgType >, Device >::block(), Eigen::TensorEvaluator< const TensorPaddingOp< PaddingDimensions, ArgType >, Device >::block(), Eigen::TensorEvaluator< const TensorReverseOp< ReverseDimensions, ArgType >, Device >::block(), Eigen::TensorEvaluator< const TensorRollOp< RollDimensions, ArgType >, Device >::block(), Eigen::Block< XprType, BlockRows, BlockCols, InnerPanel >::Block(), oomph::BlockPreconditioner< MATRIX >::block_matrix_test(), oomph::HelmholtzMGPreconditioner< DIM >::block_preconditioner_self_test(), oomph::BlockPreconditioner< MATRIX >::block_setup(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::blockBroadcastingParams(), BlockCompressionProblem< ELEMENT >::BlockCompressionProblem(), Eigen::internal::TensorBlockMapper< NumDims, Layout, IndexType >::blockDescriptor(), Eigen::internal::lapacke_helpers::lapacke_partial_lu< Scalar, StorageOrder >::blocked_lu(), Eigen::internal::partial_lu_impl< Scalar, StorageOrder, PivIndex, SizeAtCompileTime >::blocked_lu(), Eigen::internal::BlockedInPlaceTranspose(), oomph::AxisymmetricLinearElasticityEquationsBase::body_force(), oomph::LinearElasticityEquationsBase< DIM >::body_force(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::body_force(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::body_force(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::body_force(), oomph::PVDEquationsBase< DIM >::body_force(), oomph::Mesh::boundary_coordinate_exists(), boxGetCorners(), BrethertonProblem< ELEMENT >::BrethertonProblem(), NurbsUtils::bsplineDerBasis(), NurbsUtils::bsplineOneBasis(), BubbleInChannelProblem< ELEMENT >::BubbleInChannelProblem(), bug1105(), bug1150(), oomph::DoubleMultiVector::build(), oomph::AddedMainNumberingLookup::build(), oomph::CRMatrix< T >::build(), oomph::CCMatrix< T >::build(), oomph::RefineableQElement< 3 >::build(), oomph::RefineableSolidQElement< 3 >::build(), oomph::RefineableQElement< 2 >::build(), oomph::RefineableSolidQElement< 2 >::build(), oomph::ConstraintElement::build(), oomph::ElementElementConstraintElement::build(), oomph::ChannelSpineMesh< ELEMENT >::build_channel_spine_mesh(), oomph::FiniteElement::build_face_element(), oomph::QHermiteElement< DIM >::build_face_element(), oomph::QSpectralElement< 2, NNODE_1D >::build_face_element(), oomph::QSpectralElement< 3, NNODE_1D >::build_face_element(), oomph::TElement< 2, NNODE_1D >::build_face_element(), oomph::TElement< 3, NNODE_1D >::build_face_element(), oomph::GmshTetMesh< ELEMENT >::build_from_scaffold(), oomph::SimpleCubicTetMesh< ELEMENT >::build_from_scaffold(), oomph::TetgenMesh< ELEMENT >::build_from_scaffold(), oomph::TriangleMesh< ELEMENT >::build_from_scaffold(), oomph::HorizontalSingleLayerSpineMesh< ELEMENT >::build_horizontal_single_layer_mesh(), oomph::MeshAsGeomObject::build_it(), oomph::GmshTetMesh< ELEMENT >::build_it(), RefineableDrivenCavityProblem< ELEMENT >::build_mesh(), PrescribedBoundaryDisplacementProblem< ELEMENT >::build_mesh(), RefineableUnsteadyHeatProblem< ELEMENT >::build_mesh(), TurekProblem< FLUID_ELEMENT, SOLID_ELEMENT >::build_mesh(), oomph::CircularCylindricalShellMesh< ELEMENT >::build_mesh(), oomph::BackwardStepQuadMesh< ELEMENT >::build_mesh(), oomph::ExtrudedCubeMeshFromQuadMesh< ELEMENT >::build_mesh(), oomph::FishMesh< ELEMENT >::build_mesh(), oomph::HermiteQuadMesh< ELEMENT >::build_mesh(), oomph::SimpleCubicMesh< ELEMENT >::build_mesh(), oomph::BrickFromTetMesh< ELEMENT >::build_mesh(), MyCanyonMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), MyTipMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), oomph::SingleLayerCubicSpineMesh< ELEMENT >::build_single_layer_mesh(), oomph::SingleLayerSpineMesh< ELEMENT >::build_single_layer_mesh(), oomph::TetgenMesh< ELEMENT >::build_tetgenio(), oomph::TwoLayerSpineMesh< BASE_ELEMENT >::build_two_layer_mesh(), Eigen::AccelerateImpl< MatrixType_, UpLo_, Solver_, EnforceSquare_ >::buildAccelSparseMatrix(), Membrane::buildMesh(), buildProblem(), ElasticQuarterTubeMesh< ELEMENT >::bulk_element_pt(), MyCanyonMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_element_pt(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_element_pt(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_element_pt(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_element_pt(), MyTipMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_element_pt(), AxialSpineQuarterTubeMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_element_pt(), AxialSolidQuarterTubeMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_element_pt(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_element_pt(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_inlet_element_pt(), oomph::FaceElement::bulk_node_number_resize(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_outlet_element_pt(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::bulk_outlet_element_pt(), oomph::FaceElement::bulk_position_type(), oomph::FaceElement::bulk_position_type_resize(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::butterfly_1D_merge(), c2fstrv(), oomph::DoubleBuoyantQCrouzeixRaviartElement< DIM >::c_index_adv_diff_react(), oomph::RefineableDoubleBuoyantQCrouzeixRaviartElement< DIM >::c_index_adv_diff_react(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::c_index_adv_diff_react(), Eigen::internal::c_to_fortran_numbering(), Eigen::internal::simpl_chol_helper< Scalar, StorageIndex >::calc_etree(), Eigen::internal::simpl_chol_helper< Scalar, StorageIndex >::calc_hadj_inner(), Eigen::internal::simpl_chol_helper< Scalar, StorageIndex >::calc_hadj_outer(), calc_indices(), Eigen::internal::simpl_chol_helper< Scalar, StorageIndex >::calc_post(), HGridOptimiser::calcDfDx(), oomph::ConstitutiveLaw::calculate_d_second_piola_kirchhoff_stress_dG(), DragNusseltCalculationElement< ELEMENT >::calculate_drag_nusselt(), oomph::HomogenisedLinearElasticityEquations< DIM >::calculate_effective_modulus(), oomph::FluxTransportEquations< DIM >::calculate_element_averages(), oomph::VorticityRecoveryHelpers::RecoveryHelper::calculate_number_of_values_per_field(), oomph::BDF< NSTEPS >::calculate_predicted_positions(), oomph::TR::calculate_predicted_positions(), oomph::SelfStartingBDF2::calculate_predicted_positions_bdf2(), oomph::BDF< NSTEPS >::calculate_predicted_values(), oomph::TR::calculate_predicted_values(), oomph::SelfStartingBDF2::calculate_predicted_values_bdf2(), oomph::Problem::calculate_predictions(), oomph::AnisotropicHookean::calculate_second_piola_kirchhoff_stress(), oomph::GeneralisedHookean::calculate_second_piola_kirchhoff_stress(), oomph::IsotropicStrainEnergyFunctionConstitutiveLaw::calculate_second_piola_kirchhoff_stress(), TorqueCalculationElement< ELEMENT >::calculate_torque(), HGridOptimiser::calculateDiffWork(), Membrane::Edge::calculateUPre(), HGridOptimiser::calculateWork(), Eigen::ThreadPoolTempl< Environment >::Cancel(), Eigen::MatrixBase< Derived >::canonicalEulerAngles(), CantileverProblem< ELEMENT >::CantileverProblem(), CapProblem< ELEMENT >::CapProblem(), pcast_array< SrcPacket, TgtPacket, 1, TgtCoeffRatio >::cast(), pcast_array< SrcPacket, TgtPacket, 2, 1 >::cast(), pcast_array< SrcPacket, TgtPacket, 4, 1 >::cast(), pcast_array< SrcPacket, TgtPacket, 8, 1 >::cast(), Eigen::cauchy_max_bound(), Eigen::cauchy_min_bound(), oomph::CCMatrix< T >::CCMatrix(), HGridOptimiser::cell2Max(), HGridOptimiser::cell2Min(), HeatedCircularPenetratorElement::centre(), CircularPenetratorElement::centre(), oomph::ChannelSpineMesh< ELEMENT >::centre_element_pt(), oomph::ImmersedRigidBodyElement::centre_of_gravity(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::centre_of_rotation(), oomph::ChannelSpineMesh< ELEMENT >::centre_spine_pt(), CylinderMesh< ELEMENT >::centreline_node_pt(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::change_boundaries(), AirwayReopeningProblem< ELEMENT >::change_boundary_conditions(), RotatingProblem< ELEMENT >::change_length(), oomph::Hankel_functions_for_helmholtz_problem::CHankel_first(), ChannelSpineFlowProblem< ELEMENT >::ChannelSpineFlowProblem(), oomph::ChannelWithLeafletDomain::ChannelWithLeafletDomain(), oomph::ChannelWithLeafletMesh< ELEMENT >::ChannelWithLeafletMesh(), mathsFunc::chebyshev(), check_aligned_malloc(), check_aligned_new(), check_aligned_stack_alloc(), check_all_files_in_same_exact_order(), check_all_in_range(), check_all_var(), ChuteWithPeriodicInflow::Check_and_Duplicate_Periodic_Particle(), inflowFromPeriodic::Check_and_Duplicate_Periodic_Particle(), check_begin_end_for_loop(), check_extremity_accuracy(), oomph::Mesh::check_for_repeated_nodes(), FourierDecomposedHelmholtzProblem< ELEMENT >::check_gamma(), check_global_interpolation2d(), check_global_interpolation_with_derivatives2d(), check_handmade_aligned_malloc(), check_histogram(), check_indexed_view(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::check_integrity(), oomph::RefineableQElement< 3 >::check_integrity(), oomph::RefineableQElement< 2 >::check_integrity(), oomph::Mesh::check_inverted_elements(), oomph::FaceElement::check_J_eulerian_at_knots(), oomph::FiniteElement::check_jacobian(), check_locate_zeta(), check_negate(), check_product(), check_qtvector_matrix(), check_qtvector_quaternion(), check_qtvector_transform(), EqualityChecker< Scalar, StorageIndex, Dim >::check_recursive(), check_setupRandomSvs(), check_setupRangeSvs(), check_shift(), VorticityRecoveryProblem< ELEMENT >::check_smoothed_vorticity(), check_sparse_leastsquare_solving(), check_sparse_nonhermitian_determinant(), check_sparse_nonhermitian_solving(), check_sparse_spd_determinant(), check_sparse_spd_solving(), check_sparse_square_abs_determinant(), check_sparse_square_determinant(), check_sparse_square_solving(), check_stddeque_matrix(), check_stddeque_quaternion(), check_stddeque_transform(), check_stdlist_matrix(), check_stdlist_quaternion(), check_stdlist_transform(), check_stdvector_matrix(), check_stdvector_quaternion(), check_stdvector_transform(), check_tutorial_examples(), CircularPeriodicBoundary::checkBoundaryAfterParticleMoved(), DeletionBoundary::checkBoundaryAfterParticlesMove(), DropletBoundary::checkBoundaryAfterParticlesMove(), FixedClusterInsertionBoundary::checkBoundaryBeforeTimeStep(), PeriodicBoundaryHandler::checkChanged(), Mercury3Dclump::checkClumpForInteraction(), Mercury3Dclump::checkClumpForInteractionPeriodic(), MeshTriangle::checkInteractions(), PeriodicBoundaryHandler::checkIsReal(), HGridOptimiser::checkLimit(), checkOptimalTraversal_impl(), DPMBase::checkParticleForInteraction(), DPMBase::checkParticleForInteractionLocalPeriodic(), mathsFunc::chi_squared_prob(), Eigen::internal::chkder(), ChuteWithContraction::ChuteWithContraction(), ChuteWithPeriodicInflowAndContinuingBottom::ChuteWithPeriodicInflowAndContinuingBottom(), ChuteWithPeriodicInflowAndContraction::ChuteWithPeriodicInflowAndContraction(), ChuteWithPeriodicInflowAndVariableBottom::ChuteWithPeriodicInflowAndVariableBottom(), oomph::CircularPenetrator::CircularPenetrator(), oomph::InexactSubBiharmonicPreconditioner::clean_up_memory(), oomph::CRComplexMatrix::clean_up_memory(), oomph::CCComplexMatrix::clean_up_memory(), oomph::BlockTriangularPreconditioner< MATRIX >::clean_up_memory(), oomph::MGSolver< DIM >::clean_up_memory(), oomph::SuperLUSolver::clean_up_memory(), oomph::PseudoElasticPreconditioner::clean_up_memory(), oomph::PseudoElasticPreconditionerOld::clean_up_memory(), oomph::PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld::clean_up_memory(), oomph::HelmholtzMGPreconditioner< DIM >::clean_up_memory(), oomph::BandedBlockTriangularPreconditioner< MATRIX >::clean_up_memory(), oomph::Diagonal< MATRIX >::clean_up_my_memory(), oomph::SimpleTwoDofOnly< MATRIX >::clean_up_my_memory(), oomph::UpperTriangular< MATRIX >::clean_up_my_memory(), oomph::TwoPlusThreeUpperTriangularWithReplace< MATRIX >::clean_up_my_memory(), oomph::CoarseTwoPlusTwoPlusOne< MATRIX >::clean_up_my_memory(), oomph::OnePlusFourWithTwoCoarse< MATRIX >::clean_up_my_memory(), VariableBottom::cleanChute(), AxisymmetricHopper::cleanChute(), ChuteWithPeriodicInflow::cleanChute(), ChuteWithContraction::cleanChute(), Funnel::cleanChute(), inflowFromPeriodic::cleanChute(), Chute::cleanChute(), Domain::cleanCommunicationList(), PeriodicBoundaryHandler::cleanCommunicationList(), Domain::cleanCommunicationLists(), PeriodicBoundaryHandler::cleanCommunicationLists(), rapidjson::GenericValue< Encoding, Allocator >::Clear(), oomph::BlockPreconditioner< MATRIX >::clear_block_preconditioner_base(), oomph::BoundaryNode< NODE_TYPE >::clear_copied_pointers(), PeriodicBoundaryHandler::clearCommunicationLists(), CLiveStatistics< T >::CLiveStatistics(), CoatedDiskProblem< ELASTICITY_ELEMENT, HELMHOLTZ_ELEMENT >::CoatedDiskProblem(), CoatedSphereProblem< ELASTICITY_ELEMENT, HELMHOLTZ_ELEMENT >::CoatedSphereProblem(), cod(), Eigen::TensorRef< PlainObjectType >::coeff(), Eigen::internal::AmbiVector< Scalar_, StorageIndex_ >::coeff(), Eigen::ProductImpl< Lhs, Rhs, Option, Dense >::coeff(), Eigen::TranspositionsBase< Derived >::coeff(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::coeff(), Eigen::KroneckerProductBase< Derived >::coeff(), Eigen::internal::evaluator< PartialReduxExpr< ArgType, MemberOp, Direction > >::coeff(), Eigen::Select< ConditionMatrixType, ThenMatrixType, ElseMatrixType >::coeff(), Eigen::TensorEvaluator< const TensorConcatenationOp< Axis, LeftArgType, RightArgType >, Device >::coeff(), Eigen::TensorEvaluator< const TensorPaddingOp< PaddingDimensions, ArgType >, Device >::coeff(), Eigen::TensorEvaluator< const TensorPatchOp< PatchDim, ArgType >, Device >::coeff(), Eigen::TensorEvaluator< const TensorTraceOp< Dims, ArgType >, Device >::coeff(), Eigen::TensorRef< PlainObjectType >::coeffRef(), Eigen::TranspositionsBase< Derived >::coeffRef(), Eigen::internal::AmbiVector< Scalar_, StorageIndex_ >::coeffRef(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::coeffRef(), Eigen::AutoDiffVector< ValueType, JacobianType >::coeffRef(), Eigen::TensorEvaluator< TensorConcatenationOp< Axis, LeftArgType, RightArgType >, Device >::coeffRef(), Eigen::internal::cofactor_3x3(), Eigen::internal::cofactor_4x4(), Eigen::internal::BandMatrixBase< Derived >::col(), oomph::SumOfMatrices::col_map_pt(), Eigen::internal::coletree(), Eigen::SparseMatrix< Scalar_, Options_, StorageIndex_ >::collapseDuplicates(), oomph::CollapsibleChannelDomain::CollapsibleChannelDomain(), oomph::CollapsibleChannelMesh< ELEMENT >::CollapsibleChannelMesh(), CollapsibleChannelProblem< ELEMENT >::CollapsibleChannelProblem(), PeriodicBoundaryHandler::collectGhostParticleData(), PeriodicBoundaryHandler::collectInteractionData(), commandLineCG(), PeriodicBoundaryHandler::communicateNumberOfNewParticlesAndInteractions(), PeriodicBoundaryHandler::communicateTargetDomains(), compare(), compare_using_data_and_stride(), PacketBlockSet< Scalar, StorageOrder, n >::comparePacketBlock(), comparisons(), ExtrudedMovingCylinderProblem< TWO_D_ELEMENT, THREE_D_ELEMENT >::complete_element_setup(), oomph::TreeBasedRefineableMeshBase::complete_hanging_nodes(), oomph::TreeBasedRefineableMeshBase::complete_hanging_nodes_recursively(), AxiPoroProblem< ELEMENT, TIMESTEPPER >::complete_problem_setup(), CoatedDiskProblem< ELASTICITY_ELEMENT, HELMHOLTZ_ELEMENT >::complete_problem_setup(), CoatedSphereProblem< ELASTICITY_ELEMENT, HELMHOLTZ_ELEMENT >::complete_problem_setup(), PoissonProblem< ELEMENT >::complete_problem_setup(), PMLFourierDecomposedHelmholtzProblem< ELEMENT >::complete_problem_setup(), RefineableActivatorInhibitorProblem< ELEMENT >::complete_problem_setup(), RingWithTRibProblem< ELASTICITY_ELEMENT >::complete_problem_setup(), oomph::PerturbedSpineElement< ELEMENT >::complete_setup_of_dependencies(), oomph::SpineElement< ELEMENT >::complete_setup_of_dependencies(), PoissonProblem< ELEMENT >::complex_domain_with_holes(), oomph::ComplexDampedJacobi< MATRIX >::complex_smoother_setup(), oomph::ComplexDampedJacobi< MATRIX >::complex_solve_helper(), oomph::ComplexGMRES< MATRIX >::complex_solve_helper(), CompressedSquareProblem< ELEMENT >::CompressedSquareProblem(), Eigen::EigenSolver< MatrixType_ >::compute(), Eigen::internal::MatrixFunctionAtomic< MatrixType >::compute(), Eigen::GeneralizedEigenSolver< MatrixType_ >::compute(), Eigen::RealQZ< MatrixType_ >::compute(), Eigen::ArpackGeneralizedSelfAdjointEigenSolver< MatrixType, MatrixSolver, BisSPD >::compute(), Eigen::IncompleteLU< Scalar_ >::compute(), Eigen::IterScaling< MatrixType_ >::compute(), Eigen::PolynomialSolver< Scalar_, Deg_ >::compute(), Eigen::MatrixPowerAtomic< MatrixType >::compute2x2(), oomph::HelmholtzBCElementBase< ELEMENT >::compute_contribution_to_fourier_components(), ModalPRefineableQPoissonElement< DIM >::compute_energy_error(), oomph::PRefineableQLinearElasticityElement< DIM >::compute_energy_error(), oomph::PRefineableQPoissonElement< DIM >::compute_energy_error(), TwoDDGProblem< ELEMENT >::compute_error(), oomph::Mesh::compute_error(), ModalPoissonEquations< DIM >::compute_error(), MyTaylorHoodElement::compute_error(), oomph::NavierStokesElementWithSingularity< BASIC_NAVIER_STOKES_ELEMENT >::compute_error(), oomph::MultiPoissonEquations< DIM, NFIELDS >::compute_error(), PoissonElementWithSingularity< BASIC_POISSON_ELEMENT >::compute_error(), Rotateable< ELEMENT >::compute_error(), oomph::AdvectionDiffusionEquations< DIM >::compute_error(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::compute_error(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::compute_error(), oomph::AxisymAdvectionDiffusionEquations::compute_error(), oomph::AxisymmetricLinearElasticityEquations::compute_error(), oomph::BiharmonicEquations< DIM >::compute_error(), oomph::DisplacementBasedFoepplvonKarmanEquations::compute_error(), oomph::FoepplvonKarmanEquations::compute_error(), oomph::FourierDecomposedHelmholtzEquations::compute_error(), oomph::HelmholtzEquations< DIM >::compute_error(), oomph::LinearElasticityEquations< DIM >::compute_error(), oomph::LinearWaveEquations< DIM >::compute_error(), oomph::PMLFourierDecomposedHelmholtzEquations::compute_error(), oomph::PMLHelmholtzEquations< DIM >::compute_error(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM >::compute_error(), oomph::PoissonEquations< 1 >::compute_error(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::compute_error(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::compute_error(), oomph::SphericalAdvectionDiffusionEquations::compute_error(), oomph::SteadyAxisymAdvectionDiffusionEquations::compute_error(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::compute_error(), oomph::UnsteadyHeatEquations< DIM >::compute_error(), oomph::WomersleyEquations< DIM >::compute_error(), oomph::YoungLaplaceEquations::compute_error(), oomph::AxisymmetricPoroelasticityEquations::compute_error(), oomph::DarcyEquations< DIM >::compute_error(), oomph::PoroelasticityEquations< 2 >::compute_error(), oomph::PoroelasticityEquations< DIM >::compute_error(), oomph::AxisymmetricNavierStokesEquations::compute_error(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::compute_error(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::compute_error(), oomph::NavierStokesEquations< DIM >::compute_error(), oomph::NavierStokesEquations< 2 >::compute_error(), oomph::PolarNavierStokesEquations::compute_error(), oomph::SpaceTimeNavierStokesEquations< DIM >::compute_error(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::compute_error(), oomph::SphericalNavierStokesEquations::compute_error(), oomph::EulerEquations< DIM >::compute_error(), oomph::ScalarAdvectionEquations< DIM >::compute_error(), oomph::SphericalNavierStokesEquations::compute_error_e(), oomph::RefineablePoissonEquations< DIM >::compute_exact_Z2_error(), oomph::HelmholtzDtNMesh< ELEMENT >::compute_fourier_components(), oomph::HelmholtzDtNBoundaryElement< ELEMENT >::compute_gamma_contribution(), oomph::FourierDecomposedHelmholtzDtNBoundaryElement< ELEMENT >::compute_gamma_contribution(), Eigen::BDCSVD< MatrixType_, Options_ >::compute_impl(), Eigen::JacobiSVD< MatrixType_, Options_ >::compute_impl(), oomph::InexactSubBiharmonicPreconditioner::compute_inexact_schur_complement(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::compute_integrated_concentrations(), oomph::SolidFiniteElement::compute_norm(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::compute_norm(), oomph::FourierDecomposedHelmholtzEquations::compute_norm(), oomph::NavierStokesEquations< DIM >::compute_norm(), oomph::PMLFourierDecomposedHelmholtzEquations::compute_norm(), oomph::PMLHelmholtzEquations< DIM >::compute_norm(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM >::compute_norm(), oomph::PoissonEquations< DIM >::compute_norm(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::compute_norm(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::compute_norm(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::compute_norm(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::compute_norm(), oomph::UnsteadyHeatEquations< DIM >::compute_norm(), oomph::Mesh::compute_norm(), oomph::NavierStokesEquations< 2 >::compute_norm(), oomph::SpaceTimeNavierStokesEquations< DIM >::compute_norm(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::compute_norm(), internal::Colamd::compute_ordering(), Eigen::TensorSycl::internal::GeneralVectorTensor< OutScalar, OutAccessor, VectorMapper, TensorMapper, StorageIndex, Properties, KFactor, Vectorizable, is_lhs_vec, IsFinal >::compute_panel(), oomph::AxisymmetricNavierStokesEquations::compute_physical_size(), oomph::AxisymmetricPVDEquations::compute_physical_size(), oomph::AxisymmetricPVDEquationsWithPressure::compute_physical_size(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::compute_physical_size(), Eigen::TensorSycl::internal::FullReductionKernelFunctor< Evaluator, OpType, local_range >::compute_reduction(), oomph::SphericalNavierStokesEquations::compute_shear_stress(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::compute_stabilisation_parameter(), oomph::LineDerivatives::compute_surface_derivatives(), oomph::AxisymmetricDerivatives::compute_surface_derivatives(), oomph::SurfaceDerivatives::compute_surface_derivatives(), oomph::RefineableTetgenMesh< ELEMENT >::compute_volume_target(), oomph::RefineableTetMeshBase::compute_volume_target(), Membrane::computeAdditionalForces(), DPMBase::computeAllForces(), DPM::computeAllForcesNoHGrid(), Eigen::MatrixPowerAtomic< MatrixType >::computeBig(), CGHandler::computeContactPoints(), Eigen::ThreadPoolTempl< Environment >::ComputeCoprimes(), VolumeCoupling::computeCouplingForce(), VolumeCoupling::computeCouplingOnFEM(), PSD::computeD50(), Box::computeFlow(), DPMBase::computeForcesDueToWalls(), Eigen::internal::computeFromTridiagonal_impl(), Eigen::internal::SimpleTensorContractionMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, Alignment, MakePointer_ >::computeIndex(), Eigen::internal::SimpleTensorContractionMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, Alignment, MakePointer_ >::computeIndexPair(), Eigen::FullPivLU< MatrixType_, PermutationIndex_ >::computeInPlace(), Eigen::FullPivHouseholderQR< MatrixType_, PermutationIndex_ >::computeInPlace(), DPMBase::computeInternalForce(), DPMBase::computeInternalForces(), BaseCluster::computeInternalStructure(), VolumeCoupling::computeNodalCouplingForces(), Eigen::MatrixPowerAtomic< MatrixType >::computePade(), SuperQuadricParticle::computeResidualContactDetection(), SCoupling< M, O >::computeSCouplingForcesFromTriangles(), Eigen::RealSchur< MatrixType_ >::computeShift(), Eigen::BDCSVD< MatrixType_, Options_ >::computeSingVecs(), ComputeStrides(), Eigen::BDCSVD< MatrixType_, Options_ >::computeSVDofM(), VolumeCoupling::computeWeightOnParticles(), oomph::DoubleVectorHelpers::concatenate(), oomph::CRDoubleMatrixHelpers::concatenate_without_communication(), oomph::DoubleVectorHelpers::concatenate_without_communication(), Eigen::internal::conjugate_gradient(), AirwayReopeningProblem< ELEMENT >::connect_walls(), Eigen::internal::conservative_sparse_sparse_product_impl(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::conservativeResize(), Global_Parameters::constant_pressure(), Global_Physical_Variables::constant_pressure(), oomph::Data::constrain(), oomph::Data::constrain_all(), construct_and_solve_problem(), oomph::NodeNodeMortaringElement::construct_lagrange_multipliers(), oomph::QuadTreeForest::construct_north_equivalents(), oomph::OcTree::construct_rotation_matrix(), oomph::OcTreeForest::construct_up_right_equivalents(), construct_vector(), MercuryLogo::constructTextAsParticles(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::contact_line_vectors(), Domain::containsParticle(), oomph::FaceElement::continuous_tangent_and_outer_unit_normal(), contraction_batch(), contraction_both_transposed(), contraction_lhs_transposed(), contraction_rhs_transposed(), ContractionWithPeriodicInflow::ContractionWithPeriodicInflow(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::contribution_to_enclosed_volume(), oomph::LineVolumeConstraintBoundingElement::contribution_to_enclosed_volume(), oomph::AxisymmetricVolumeConstraintBoundingElement::contribution_to_enclosed_volume(), oomph::StefanBoltzmannRadiationBase::contribution_to_stefan_boltzmann_radiation(), oomph::AxisymmetricPoroelasticityTractionElement< ELEMENT >::contribution_to_total_porous_flux(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::contribution_to_total_porous_flux(), oomph::AxisymmetricVolumeConstraintBoundingElement::contribution_to_volume_flux(), ConvectionProblem< NST_ELEMENT, AD_ELEMENT >::ConvectionProblem(), Eigen::internal::convertArrayBF16toF32(), Eigen::internal::convertArrayPointerBF16toF32(), Eigen::internal::convertArrayPointerBF16toF32DupOne(), Eigen::internal::convertArrayPointerF32toBF16(), convertArrayPointerF32toBF16VSX(), Eigen::internal::convertBF16toF32(), HorizontalBaseScrew::convertLimits(), PSD::convertPdfPhiToPdfMeter(), Eigen::internal::convertPointerBF16toF32(), Eigen::internal::convertPointerF32toBF16(), convertPointerF32toBF16VSX(), oomph::TriangleMesh< ELEMENT >::convex_hull(), coo_tocsr(), CFile::copy(), Eigen::internal::TensorBlockIO< Scalar, IndexType, NumDims, Layout >::Copy(), copy(), oomph::Problem::copy(), Eigen::internal::copy_construct_elements_of_array(), CFile::copy_data(), oomph::LinearisedQCrouzeixRaviartElement::copy_efunction_to_normalisation(), c_interface_base< real >::copy_matrix(), oomph::BackupMeshForProjection< GEOMETRIC_ELEMENT >::copy_onto_original_mesh(), oomph::TrilinosEpetraHelpers::copy_to_oomphlib_vector(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::copy_to_ucol(), Eigen::internal::SparseLUImpl< MatrixType_::Scalar, MatrixType_::StorageIndex >::copy_to_ucol(), c_interface_base< real >::copy_vector(), SubcriticalMaserBoundaryTEST::copyExtraParticles(), mathsFunc::cos(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::costPerCoeff(), Eigen::TensorEvaluator< const TensorPaddingOp< PaddingDimensions, ArgType >, Device >::costPerCoeff(), Eigen::TensorEvaluator< const TensorReverseOp< ReverseDimensions, ArgType >, Device >::costPerCoeff(), Eigen::TensorEvaluator< const TensorRollOp< RollDimensions, ArgType >, Device >::costPerCoeff(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::countnz(), SolidProblem< ELEMENT_TYPE >::countPinned(), Eigen::internal::covar(), RandomImpl< Eigen::SparseMatrix< Scalar, Options, DenseIndex > >::Create(), RandomImpl< Eigen::SparseVector< Scalar, Options, DenseIndex > >::Create(), BendingCantileverProblem< ELEMENT >::create_constraint_elements(), oomph::VorticitySmootherElement< ELEMENT >::create_container_for_vorticity_and_derivatives(), UnstructuredImmersedEllipseProblem< ELEMENT >::create_drag_elements(), oomph::TrilinosEpetraHelpers::create_epetra_map(), ExtrudedMovingCylinderProblem< TWO_D_ELEMENT, THREE_D_ELEMENT >::create_extruded_mesh(), create_fluid_and_solid_surface_mesh_from_fluid_xda_mesh(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_fluid_traction_elements(), UnstructuredFluidProblem< ELEMENT >::create_fluid_traction_elements(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_fsi_traction_elements(), Funnel::create_funnel(), oomph::HypreHelpers::create_HYPRE_Matrix(), oomph::HypreHelpers::create_HYPRE_Vector(), UnstructuredTorusProblem< ELEMENT >::create_lagrange_multiplier_elements(), FSICollapsibleChannelProblem< ELEMENT >::create_lagrange_multiplier_elements(), PseudoElasticCollapsibleChannelProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_lagrange_multiplier_elements(), FSIChannelWithLeafletProblem< ELEMENT >::create_lagrange_multiplier_elements(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_lagrange_multiplier_elements(), PrescribedBoundaryDisplacementProblem< ELEMENT >::create_lagrange_multiplier_elements(), UnstructuredImmersedEllipseProblem< ELEMENT >::create_lagrange_multiplier_elements(), UnstructuredFluidProblem< ELEMENT >::create_lagrange_multiplier_elements(), CollapsibleChannelProblem< ELEMENT >::create_lagrange_multiplier_elements(), oomph::GmshTetScaffoldMesh::create_mesh_from_msh_file(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_parallel_flow_lagrange_elements(), UnstructuredFluidProblem< ELEMENT >::create_parallel_outflow_lagrange_elements(), CoatedDiskProblem< ELASTICITY_ELEMENT, HELMHOLTZ_ELEMENT >::create_solid_traction_elements(), CoatedSphereProblem< ELASTICITY_ELEMENT, HELMHOLTZ_ELEMENT >::create_solid_traction_elements(), NavierStokesProblem< ELEMENT >::create_spacetime_mesh(), BlockCompressionProblem< ELEMENT >::create_traction_elements(), UnstructuredSolidProblem< ELEMENT, MESH >::create_traction_elements(), SheetGlueProblem< ELEMENT >::create_traction_elements(), BaseCluster::createAdjacencyMatrix(), AngleOfRepose::createBaseSpecies(), SilbertPeriodic::createBaseSpecies(), VariableBottom::createBottom(), FlowRule::createBottom(), Chute::createBottom(), DomainHandler::createDomains(), TriangleMeshWall::createFourPointMesh(), Domain::createLookUpTable(), IntersectionOfWalls::createOpenPrism(), TriangleMeshWall::createParallelogramMesh(), CircularPeriodicBoundary::createPeriodicParticle(), AngledPeriodicBoundary::createPeriodicParticles(), CircularPeriodicBoundary::createPeriodicParticles(), ConstantMassFlowMaserBoundary::createPeriodicParticles(), LeesEdwardsBoundary::createPeriodicParticles(), PeriodicBoundary::createPeriodicParticles(), SubcriticalMaserBoundary::createPeriodicParticles(), TimeDependentPeriodicBoundary::createPeriodicParticles(), PSDContinuous::createPSDFromRadiiAndProbabilities(), NurbsUtils::createUniformKnotVector(), Membrane::createVertexParticles(), LevelSetWall::createVTK(), LevelSetWall::createVTKSphere(), MercuryProblem::createWalls(), oomph::CRMatrix< T >::CRMatrix(), Eigen::internal::cs_tdfs(), csr_sort_indices(), csr_sum_duplicates(), oomph::CumulativeTimings::cumulative_time(), oomph::Timer::cumulative_time(), oomph::TriangleMeshCurve::curve_section_pt(), CylinderAndInterfaceDomain::CylinderAndInterfaceDomain(), CylinderAndInterfaceMesh< ELEMENT >::CylinderAndInterfaceMesh(), oomph::CylinderWithFlagDomain::CylinderWithFlagDomain(), oomph::QElement< 2, NNODE_1D >::d2shape_local(), oomph::QElement< 3, NNODE_1D >::d2shape_local(), oomph::TElementShape< 2, 2 >::d2shape_local(), oomph::TElementShape< 3, 2 >::d2shape_local(), oomph::FiniteElement::d2shape_local_at_knot(), oomph::AxisymmetricPoroelasticityEquations::d2u_dt2(), oomph::PoroelasticityEquations< DIM >::d2u_dt2(), oomph::AxisymmetricLinearElasticityEquationsBase::d2u_dt2_axisymmetric_linear_elasticity(), oomph::LinearElasticityEquationsBase< DIM >::d2u_dt2_linear_elasticity(), oomph::FiniteElement::d_dshape_eulerian_dnodal_coordinates_templated_helper(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::d_kin_energy_dt(), oomph::NavierStokesEquations< DIM >::d_kin_energy_dt(), oomph::SpaceTimeNavierStokesEquations< DIM >::d_kin_energy_dt(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::d_kin_energy_dt(), oomph::SphericalNavierStokesEquations::d_kin_energy_dt(), oomph::FourierDecomposedHelmholtzBCElementBase< ELEMENT >::d_shape_and_test_local(), oomph::HelmholtzBCElementBase< ELEMENT >::d_shape_and_test_local(), oomph::PMLFourierDecomposedHelmholtzPowerMonitorElement< ELEMENT >::d_shape_and_test_local(), Eigen::TensorEvaluator< const TensorSlicingOp< StartIndices, Sizes, ArgType >, Device >::data(), oomph::Data::Data(), oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >::data_values_of_field(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::data_values_of_field(), ModalPRefineableQElement< DIM >::dbasis_local(), ModalPRefineableQPoissonElement< DIM >::dbasis_local_at_knot(), DDConvectionProblem< NST_ELEMENT, AD_ELEMENT >::DDConvectionProblem(), oomph::Orthpoly::ddlegendre(), Debug(), oomph::Problem::debug_hook_fct(), Eigen::internal::default_construct_elements_of_array(), Eigen::BDCSVD< MatrixType_, Options_ >::deflation(), Eigen::BDCSVD< MatrixType_, Options_ >::deflation43(), Eigen::BDCSVD< MatrixType_, Options_ >::deflation44(), MeltSpinningProblem< ELEMENT >::deform_free_surface(), AxisymFreeSurfaceNozzleAdvDiffRobinProblem< ELEMENT >::deform_free_surface(), InterfaceProblem< ELEMENT, TIMESTEPPER >::deform_free_surface(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::deform_interface(), DeformableFishPoissonProblem< ELEMENT >::DeformableFishPoissonProblem(), tetgenio::deinitialize(), oomph::Mesh::delete_all_external_storage(), demo_smoothing_with_linear_elasticity(), demo_smoothing_with_nonlinear_elasticity(), demo_smoothing_with_poisson(), DemoPoissonProblem::DemoPoissonProblem(), dense_storage_assignment(), dense_storage_copy(), dense_storage_swap(), oomph::DenseMatrix< T >::DenseMatrix(), oomph::StrainEnergyFunction::derivatives(), oomph::GeneralisedElement::describe_dofs(), oomph::Mesh::describe_dofs(), oomph::Data::describe_dofs(), oomph::Problem::describe_dofs(), oomph::ElementWithExternalElement::describe_local_dofs(), oomph::ElementWithMovingNodes::describe_local_dofs(), oomph::GeneralisedElement::describe_local_dofs(), oomph::FSIWallElement::describe_local_dofs(), oomph::Mesh::describe_local_dofs(), oomph::TPVDElement< DIM, NNODE_1D >::describe_local_dofs(), oomph::SpineMesh::describe_spine_dofs(), internal::Colamd::detect_super_cols(), determinant(), DenseLM< Scalar >::df(), chwirut2_functor::df(), misra1a_functor::df(), hahn1_functor::df(), misra1d_functor::df(), lanczos1_functor::df(), rat42_functor::df(), MGH10_functor::df(), BoxBOD_functor::df(), MGH17_functor::df(), MGH09_functor::df(), Bennett5_functor::df(), thurber_functor::df(), rat43_functor::df(), eckerle4_functor::df(), lmder_functor::df(), lmstr_functor::df(), SSPorousChannelEquations::df_dt(), oomph::ScalarAdvectionEquations< DIM >::dflux_du(), Eigen::DGMRES< MatrixType_, Preconditioner_ >::dgmresCycle(), DGProblem< ELEMENT >::DGProblem(), oomph::PerturbedSpineLinearisedAxisymmetricFluidInterfaceElement< ELEMENT >::dH_dt(), Eigen::internal::dhs_cpack< double, DataMapper, Packet, PacketC, StorageOrder, Conjugate, PanelMode, true >::dhs_ccopy(), Eigen::internal::dhs_cpack< double, DataMapper, Packet, PacketC, StorageOrder, Conjugate, PanelMode, false >::dhs_ccopy(), Eigen::internal::dhs_cpack< Scalar, DataMapper, Packet, PacketC, StorageOrder, Conjugate, PanelMode, UseLhs >::dhs_ccopy(), Eigen::internal::dhs_pack< double, DataMapper, Packet2d, StorageOrder, PanelMode, true >::dhs_copy(), Eigen::internal::dhs_pack< double, DataMapper, Packet2d, StorageOrder, PanelMode, false >::dhs_copy(), Eigen::internal::dhs_pack< Scalar, DataMapper, Packet, StorageOrder, PanelMode, UseLhs >::dhs_copy(), Eigen::internal::BandMatrixBase< Derived >::diagonal(), oomph::CRDoubleMatrix::diagonal_entries(), Eigen::internal::BandMatrixBase< Derived >::diagonalLength(), diagonalmatrices(), HGridOptimiser::diffEndExpectedCellsIntegral(), HGridOptimiser::diffHExpectedCellsIntegral(), HGridOptimiser::diffHExpectedCellsIntegralCellNumerator(), HGridOptimiser::diffPdfInt(), HGridOptimiser::diffStartExpectedCellsIntegral(), BinArray::dimension_of_bin_array(), BinArray::dimensions_of_bin_array(), oomph::AxisymmetricNavierStokesEquations::dinterpolated_u_axi_nst_ddata(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::dinterpolated_u_axi_nst_ddata(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::dinterpolated_u_nst_ddata(), oomph::NavierStokesEquations< DIM >::dinterpolated_u_nst_ddata(), oomph::SpaceTimeNavierStokesEquations< DIM >::dinterpolated_u_nst_ddata(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::dinterpolated_u_nst_ddata(), UnsteadyHeatProblem< ELEMENT >::disable_ALE(), oomph::TriangleMeshCurve::disable_polyline_refinement(), oomph::TriangleMeshCurve::disable_polyline_unrefinement(), oomph::MGSolver< DIM >::disable_smoother_and_superlu_doc_time(), oomph::HelmholtzMGPreconditioner< DIM >::disable_smoother_and_superlu_doc_time(), Domain::disableBoundaries(), DiskOscillationProblem< ELEMENT >::DiskOscillationProblem(), DiskShockWaveProblem< ELEMENT, TIMESTEPPER >::DiskShockWaveProblem(), oomph::DiskWithTorusAroundEdgeTetMeshFacetedSurface::DiskWithTorusAroundEdgeTetMeshFacetedSurface(), oomph::AxisymmetricNavierStokesEquations::dissipation(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::dissipation(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::dissipation(), oomph::NavierStokesEquations< DIM >::dissipation(), oomph::PolarNavierStokesEquations::dissipation(), oomph::SpaceTimeNavierStokesEquations< DIM >::dissipation(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::dissipation(), oomph::SphericalNavierStokesEquations::dissipation(), oomph::NavierStokesEquations< 2 >::dissipation(), LiquidMigrationLSInteraction::distributeToOtherBridges(), LiquidMigrationWilletInteraction::distributeToOtherBridges(), divacNorm(), Eigen::BDCSVD< MatrixType_, Options_ >::divide(), oomph::LinearisedAxisymmetricNavierStokesEquations::dkin_energy_dt(), oomph::FiniteElement::dnodal_position_dt(), oomph::FiniteElement::dnodal_position_gen_dt(), oomph::LinearisedAxisymmetricNavierStokesEquations::dnodal_position_perturbation_dt_lin_axi_nst(), oomph::SolidHelpers::doc_2D_principal_stress(), oomph::MyProblem::doc_boundaries(), UnstructuredFluidProblem< ELEMENT >::doc_boundary_coordinates(), oomph::Mesh::doc_boundary_coordinates(), DiskShockWaveProblem< ELEMENT, TIMESTEPPER >::doc_displ_and_veloc(), oomph::OcTree::doc_face_neighbours(), oomph::Z2ErrorEstimator::doc_flux(), oomph::FSI_functions::doc_fsi(), oomph::BinaryTree::doc_neighbours(), oomph::QuadTree::doc_neighbours(), PseudoElasticCollapsibleChannelProblem< FLUID_ELEMENT, SOLID_ELEMENT >::doc_solid_boundary_coordinates(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::doc_solid_boundary_coordinates(), StefanBoltzmannProblem< ELEMENT >::doc_solution(), GeomObjectAsGeneralisedElementProblem::doc_solution(), SolidFreeSurfaceRotationProblem< ELEMENT >::doc_solution(), DiskShockWaveProblem< ELEMENT, TIMESTEPPER >::doc_solution(), CompressedSquareProblem< ELEMENT >::doc_solution(), RefineableDrivenCavityProblem< ELEMENT >::doc_solution(), FSIRingProblem::doc_solution(), TetmeshPoissonProblem< ELEMENT >::doc_solution(), PoissonProblem< ELEMENT >::doc_solution(), FallingBlockProblem< ELEMENT >::doc_solution(), RisingBubbleProblem< ELEMENT >::doc_solution(), ScatteringProblem< ELEMENT >::doc_solution(), AirwayReopeningProblem< ELEMENT >::doc_solution(), PressureWaveFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::doc_solution(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::doc_solution(), PRefineableDrivenCavityProblem< ELEMENT >::doc_solution(), CantileverProblem< ELEMENT >::doc_solution(), DiskOscillationProblem< ELEMENT >::doc_solution(), SimpleShearProblem< ELEMENT >::doc_solution(), TestPoissonProblem< ELEMENT >::doc_solution(), oomph::BiharmonicFluidProblem< DIM >::doc_solution(), FSIChannelWithLeafletProblem< ELEMENT >::doc_solution(), TurekProblem< FLUID_ELEMENT, SOLID_ELEMENT >::doc_solution(), CollapsibleChannelProblem< ELEMENT >::doc_solution(), RefineableYoungLaplaceProblem< ELEMENT >::doc_solution(), ConvectionProblem< NST_ELEMENT, AD_ELEMENT >::doc_solution(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::doc_solution(), SegregatedFSICollapsibleChannelProblem< ELEMENT >::doc_solution_steady(), SegregatedFSICollapsibleChannelProblem< ELEMENT >::doc_solution_unsteady(), oomph::OcTree::doc_true_edge_neighbours(), checkIdx::doCheck_(), Eigen::EigenSolver< MatrixType_ >::doComputeEigenvectors(), Eigen::ComplexEigenSolver< MatrixType_ >::doComputeEigenvectors(), oomph::BlockPreconditioner< MATRIX >::document(), oomph::Problem::does_pointer_correspond_to_problem_data(), oomph::SpineMesh::does_pointer_correspond_to_spine_data(), oomph::Data::does_pointer_correspond_to_value(), oomph::Problem::dof(), oomph::Problem::dof_current(), oomph::Problem::dof_derivative(), oomph::Problem::dof_pt(), oomph::GeneralisedElement::dof_pt_vector(), oomph::GeneralisedElement::dof_vector(), Eigen::internal::dogleg(), oomph::DoubleMultiVector::dot(), oomph::DoubleVector::dot(), Eigen::SparseMatrixBase< Derived >::dot(), oomph::VectorHelpers::dot(), oomph::DoubleMultiVector::DoubleMultiVector(), oomph::DoubleMultiVector::doublevector(), oomph::DoubleVectorHaloScheme::DoubleVectorHaloScheme(), oomph::FSIHermiteBeamElement::dposition_dlagrangian_at_local_coordinate(), oomph::FSIDiagHermiteShellElement::dposition_dlagrangian_at_local_coordinate(), oomph::Node::dposition_dt(), oomph::GeomObject::dposition_dt(), oomph::ImmersedRigidBodyElement::dposition_dt(), oomph::Node::dposition_gen_dt(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::dpshape_and_dptest_eulerian_nst(), oomph::QTaylorHoodElement< DIM >::dpshape_and_dptest_eulerian_nst(), oomph::QTaylorHoodSpaceTimeElement< DIM >::dpshape_and_dptest_eulerian_nst(), oomph::QTaylorHoodSpaceTimeElement< DIM >::dpshape_eulerian(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::dpshape_eulerian(), oomph::QTaylorHoodSpaceTimeElement< DIM >::dptest_eulerian(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::dptest_eulerian(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::drag_force(), FancySpheres::draw(), DrivenCavityProblem< ELEMENT, MESH >::DrivenCavityProblem(), DropInChannelProblem< ELEMENT >::DropInChannelProblem(), oomph::QAdvectionDiffusionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_adv_diff(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_adv_diff(), oomph::QSteadyAxisymAdvectionDiffusionElement< NNODE_1D >::dshape_and_dtest_eulerian_adv_diff(), oomph::QAdvectionDiffusionReactionElement< NREAGENT, DIM, NNODE_1D >::dshape_and_dtest_eulerian_adv_diff_react(), oomph::TAdvectionDiffusionReactionElement< NREAGENT, DIM, NNODE_1D >::dshape_and_dtest_eulerian_adv_diff_react(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_and_dnodal_coordinates_at_knot_lin_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_and_dnodal_coordinates_at_knot_lin_axi_nst(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_at_knot_adv_diff(), oomph::AxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_axi_nst(), oomph::AxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_axi_nst(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_lin_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_lin_axi_nst(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_linearised_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_linearised_axi_nst(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::QCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::QTaylorHoodElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::TCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::TTaylorHoodElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::QTaylorHoodSpaceTimeElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::dshape_and_dtest_eulerian_at_knot_nst(), oomph::PolarCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_pnst(), oomph::PolarTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_pnst(), oomph::QSphericalCrouzeixRaviartElement::dshape_and_dtest_eulerian_at_knot_spherical_nst(), oomph::QSphericalTaylorHoodElement::dshape_and_dtest_eulerian_at_knot_spherical_nst(), oomph::QUnsteadyHeatSpaceTimeElement< SPATIAL_DIM, NNODE_1D >::dshape_and_dtest_eulerian_at_knot_ust_heat(), oomph::QUnsteadyHeatMixedOrderSpaceTimeElement< SPATIAL_DIM, NNODE_1D >::dshape_and_dtest_eulerian_at_knot_ust_heat(), oomph::QAxisymAdvectionDiffusionElement< NNODE_1D >::dshape_and_dtest_eulerian_axi_adv_diff(), oomph::AxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_axi_nst(), oomph::AxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_axi_nst(), oomph::QGeneralisedAdvectionDiffusionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_cons_adv_diff(), QGeneralisedAxisymAdvectionDiffusionElement< NNODE_1D >::dshape_and_dtest_eulerian_cons_axisym_adv_diff(), oomph::QSpectralEulerElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_flux_transport(), oomph::QSpectralScalarAdvectionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_flux_transport(), oomph::QScalarAdvectionElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_flux_transport(), oomph::TFourierDecomposedHelmholtzElement< NNODE_1D >::dshape_and_dtest_eulerian_fourier_decomposed_helmholtz(), oomph::TDisplacementBasedFoepplvonKarmanElement< NNODE_1D >::dshape_and_dtest_eulerian_fvk(), oomph::TFoepplvonKarmanElement< NNODE_1D >::dshape_and_dtest_eulerian_fvk(), oomph::THelmholtzElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_helmholtz(), oomph::TPMLHelmholtzElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_helmholtz(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_lin_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_lin_axi_nst(), oomph::QLinearWaveElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_lin_wave(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::dshape_and_dtest_eulerian_linearised_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::dshape_and_dtest_eulerian_linearised_axi_nst(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_nst(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::dshape_and_dtest_eulerian_nst(), oomph::QTaylorHoodSpaceTimeElement< DIM >::dshape_and_dtest_eulerian_nst(), oomph::TPMLFourierDecomposedHelmholtzElement< NNODE_1D >::dshape_and_dtest_eulerian_pml_fourier_decomposed_helmholtz(), oomph::PolarCrouzeixRaviartElement::dshape_and_dtest_eulerian_pnst(), oomph::PolarTaylorHoodElement::dshape_and_dtest_eulerian_pnst(), oomph::QSpectralPoissonElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_poisson(), oomph::TPoissonElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_poisson(), oomph::QSphericalAdvectionDiffusionElement< NNODE_1D >::dshape_and_dtest_eulerian_spherical_adv_diff(), oomph::QSphericalCrouzeixRaviartElement::dshape_and_dtest_eulerian_spherical_nst(), oomph::QSphericalTaylorHoodElement::dshape_and_dtest_eulerian_spherical_nst(), oomph::TUnsteadyHeatElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_ust_heat(), oomph::QUnsteadyHeatElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_ust_heat(), oomph::TWomersleyElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_womersley(), oomph::QWomersleyElement< DIM, NNODE_1D >::dshape_and_dtest_eulerian_womersley(), ModalPRefineableQPoissonElement< DIM >::dshape_dbasis_and_dtest_eulerian(), ModalPRefineableQPoissonElement< DIM >::dshape_dbasis_and_dtest_eulerian_at_knot(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::dshape_local(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::dshape_local(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::dshape_local(), oomph::QElement< 2, NNODE_1D >::dshape_local(), oomph::QElement< 3, NNODE_1D >::dshape_local(), oomph::QSpectralElement< 2, NNODE_1D >::dshape_local(), oomph::QSpectralElement< 3, NNODE_1D >::dshape_local(), oomph::ClampedHermiteShellBoundaryConditionElement::dshape_local(), oomph::FiniteElement::dshape_local_at_knot(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::dshape_local_u_nst(), oomph::QUnsteadyHeatMixedOrderSpaceTimeElement< SPATIAL_DIM, NNODE_1D >::dshape_local_ust_heat(), Eigen::DSizes< DenseIndex, NumDims >::DSizes(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::dtest_local_u_nst(), oomph::QUnsteadyHeatMixedOrderSpaceTimeElement< SPATIAL_DIM, NNODE_1D >::dtest_local_ust_heat(), SpineGravityTractionElement< ELEMENT >::du_dt(), oomph::AxisymmetricPoroelasticityEquations::du_dt(), oomph::PoroelasticityEquations< DIM >::du_dt(), oomph::AxisymmetricNavierStokesEquations::du_dt_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::du_dt_axi_nst(), oomph::AxisymmetricLinearElasticityEquationsBase::du_dt_axisymmetric_linear_elasticity(), oomph::FluxTransportEquations< DIM >::du_dt_flux_transport(), oomph::LinearisedAxisymmetricNavierStokesEquations::du_dt_lin_axi_nst(), oomph::LinearisedAxisymmetricNavierStokesEquations::du_dt_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::du_dt_linearised_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::du_dt_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::du_dt_nst(), oomph::PolarNavierStokesEquations::du_dt_pnst(), oomph::DummyErrorEstimator::DummyErrorEstimator(), oomph::Problem::dump(), oomph::Mesh::dump(), oomph::TreeBasedRefineableMeshBase::dump_refinement(), dump_table_for_subset(), oomph::Node::dx_dt(), oomph::Node::dx_gen_dt(), oomph::LinearisedAxisymmetricFluidInterfaceElement::dXhat_dt(), FSIRingProblem::dynamic_run(), dynamicVectorConstruction(), oomph::LinearElasticityEquationsBase< DIM >::E(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::E(), oomph::PoroelasticityEquations< DIM >::E(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::E(), oomph::TriangleScaffoldMesh::edge_boundary(), oomph::TetgenScaffoldMesh::edge_boundary(), oomph::TetgenScaffoldMesh::edge_index(), oomph::TriangleScaffoldMesh::edge_index(), ProblemParameters::edge_sign_setup(), TestProblem::edge_sign_setup(), Global_Physical_Variables::edge_sign_setup(), efficiency_of_subset(), EIGEN_DECLARE_TEST(), eigensolver_generic_extra(), oomph::LinearisedNavierStokesEigenfunctionNormalisationElement::eigenvalue(), oomph::LinearisedNavierStokesEigenfunctionNormalisationElement::eigenvalue_local_eqn(), oomph::LinearisedNavierStokesEquations::eigenvalue_local_eqn(), oomph::DenseDoubleMatrix::eigenvalues_by_jacobi(), Eigen::EigenSolver< MatrixType_ >::eigenvectors(), oomph::EighthSphereDomain::EighthSphereDomain(), oomph::EighthSphereMesh< ELEMENT >::EighthSphereMesh(), EighthSpherePoissonProblem< ELEMENT >::EighthSpherePoissonProblem(), ElasticQuadFromTriangleMesh< ELEMENT >::el_compute_norm(), ElasticAnnulusProblem< ELASTICITY_ELEMENT >::ElasticAnnulusProblem(), ElasticFishBackElement::ElasticFishBackElement(), ElasticFishProblem< ELEMENT >::ElasticFishProblem(), ElasticInterfaceProblem< ELEMENT, TIMESTEPPER >::ElasticInterfaceProblem(), ElasticRefineableQuarterCircleSectorMesh< ELEMENT >::ElasticRefineableQuarterCircleSectorMesh(), oomph::ElasticRefineableRectangularQuadMesh< ELEMENT >::ElasticRefineableRectangularQuadMesh(), ElasticRefineableTwoLayerMesh< ELEMENT >::ElasticRefineableTwoLayerMesh(), ElasticRingProblem< ELEMENT >::ElasticRingProblem(), oomph::ElasticUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::ElasticUpdateFluidInterfaceElement(), oomph::ElementElementConstraintElement::elem_pt(), oomph::TwoLayerPerturbedSpineMesh< ELEMENT >::element_reorder(), oomph::ChannelSpineMesh< ELEMENT >::element_reorder(), oomph::RectangularQuadMesh< ELEMENT >::element_reorder(), Eigen::TensorSycl::internal::PartialReductionKernel< Evaluator, OpType, PannelParameters, rt >::element_wise_reduce(), oomph::Mesh::elemental_dimension(), ElementAnalysis::ElementAnalysis(), Detail::emitProxy(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::emptyBlock(), oomph::TriangleMeshCurve::enable_polyline_refinement(), oomph::TriangleMeshCurve::enable_polyline_unrefinement(), encode(), UnsteadyHeatProblem< ELEMENT >::enforce_time_periodic_boundary_conditions(), oomph::CRDoubleMatrix::entries_are_sorted(), oomph::DenseMatrix< T >::entry(), oomph::MapMatrixMixed< KEY_TYPE_ROW, KEY_TYPE_COL, VALUE_TYPE >::entry_pt(), EntryFlowProblem< ELEMENT >::EntryFlowProblem(), oomph::Data::eqn_number(), oomph::Data::eqn_number_pt(), equalsIdentity(), Eigen::internal::etree_find(), Eigen::MatrixBase< Derived >::eulerAngles(), eulerangles_manual(), BatchMatMul< TensorType >::eval(), eval_closed_spline2d(), eval_spline3d(), eval_spline3d_onbrks(), Eigen::TensorEvaluator< const TensorAssignOp< LeftArgType, RightArgType >, Device >::evalPacket(), Eigen::TensorEvaluator< const TensorEvalToOp< ArgType, MakePointer_ >, Device >::evalPacket(), Eigen::TensorEvaluator< const TensorAssignOp< LeftArgType, RightArgType >, Device >::evalScalar(), Eigen::TensorEvaluator< const TensorEvalToOp< ArgType, MakePointer_ >, Device >::evalScalar(), evalSolverSugarFunction(), Eigen::TensorEvaluator< const TensorSlicingOp< StartIndices, Sizes, ArgType >, Device >::evalSubExprsIfNeeded(), Eigen::TensorReductionEvaluatorBase< const TensorReductionOp< Op, Dims, ArgType, MakePointer_ >, Device >::evalSubExprsIfNeededCommon(), Eigen::internal::BandMatrixBase< Derived >::evalTo(), Eigen::internal::kernel_retval< FullPivLU< MatrixType_, PermutationIndex_ > >::evalTo(), Eigen::internal::image_retval< FullPivLU< MatrixType_, PermutationIndex_ > >::evalTo(), Eigen::KroneckerProduct< Lhs, Rhs >::evalTo(), Eigen::KroneckerProductSparse< Lhs, Rhs >::evalTo(), Eigen::PermutationBase< Derived >::evalTo(), Eigen::InverseImpl< PermutationType, PermutationStorage >::evalTo(), Eigen::TensorEvaluator< const TensorConvolutionOp< Indices, InputArgType, KernelArgType >, Device >::evalTo(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::evalToBuf(), NurbsSurface::evaluateDerivatives(), ProblemParameters::exact_minus_dudr(), ProblemParameters::exact_soln(), oomph::GeneralisedElement::exclude_external_data_fd(), oomph::GeneralisedElement::exclude_internal_data_fd(), HGridOptimiser::expectedCellsIntegral(), HGridOptimiser::expectedCellsIntegralCellDenominator(), HGridOptimiser::expectedCellsIntegralCellNumerator(), oomph::ConstraintElement::ext_data_pt(), oomph::ConstraintElement::ext_eqn(), ChuteWithWedge::extendBottom(), SubcriticalMaserBoundaryTEST::extendBottom(), oomph::PVDEquations< DIM >::extended_output(), oomph::PVDEquationsWithPressure< DIM >::extended_output(), ChuteWithPeriodicInflow::ExtendInWidth(), NurbsUtils::extendKnotVector(), oomph::ElementElementConstraintElement::extern_data_eqn(), oomph::ElementElementConstraintElement::extern_data_pt(), oomph::GeneralisedElement::external_data_fd(), oomph::GeneralisedElement::external_data_pt(), oomph::ElementWithExternalElement::external_interaction_field_data_pt(), oomph::ElementWithExternalElement::external_interaction_geometric_data_pt(), oomph::GeneralisedElement::external_local_eqn(), Eigen::TensorSycl::internal::GeneralVectorTensor< OutScalar, OutAccessor, VectorMapper, TensorMapper, StorageIndex, Properties, KFactor, Vectorizable, is_lhs_vec, IsFinal >::extract_block(), Eigen::TensorSycl::internal::TensorContractionKernel< OutScalar, LhsScalar, RhsScalar, OutAccessor, LhsMapper, RhsMapper, StorageIndex, Properties, TripleDim, Vectorizable, input_mapper_properties, IsFinal, contraction_tp >::extract_block(), Eigen::TensorEvaluator< const TensorGeneratorOp< Generator, ArgType >, Device >::extract_coordinates(), Eigen::TensorEvaluator< const TensorRollOp< RollDimensions, ArgType >, Device >::extract_coordinates(), oomph::DampedJacobi< MATRIX >::extract_diagonal_entries(), oomph::SphericalNavierStokesEquations::extract_velocity(), Eigen::SuperLUBase< MatrixType_, Derived >::extractData(), oomph::SegregatableFSIProblem::extrapolate_solid_data(), extrapolated_strain_rate(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::extrapolated_strain_rate(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::extrapolated_strain_rate(), oomph::ExtrudedDomain::ExtrudedDomain(), SSPorousChannelElement::f(), f2cstrv(), oomph::TetgenScaffoldMesh::face_boundary(), oomph::DGElement::face_element_pt(), oomph::TetgenScaffoldMesh::face_index(), oomph::FiniteElement::face_node_number_error_check(), SingleElement::face_normal(), oomph::DenseLU::factorise(), oomph::SuperLUSolver::factorise_serial(), Eigen::SparseQR< MatrixType_, OrderingType_ >::factorize(), Eigen::SparseLU< MatrixType_, OrderingType_ >::factorize(), Eigen::IncompleteCholesky< Scalar, UpLo_, OrderingType_ >::factorize(), Eigen::SimplicialCholeskyBase< Derived >::factorize_preordered(), FallingBlockProblem< ELEMENT >::FallingBlockProblem(), FancySpheres::FancySpheres(), fcn_chkder(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::fill(), RefineableBinArray::fill_bin_array(), NonRefineableBinArray::fill_bin_array(), NonRefineableBinArray::fill_bin_by_diffusion(), oomph::AxisymmetricNavierStokesEquations::fill_in_contribution_to_hessian_vector_products(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_contribution_to_hessian_vector_products(), oomph::NavierStokesEquations< 2 >::fill_in_contribution_to_hessian_vector_products(), oomph::IMRODEElement::fill_in_contribution_to_jacobian(), oomph::ODEElement::fill_in_contribution_to_jacobian(), OrrSommerfeldEquations< DIM >::fill_in_contribution_to_jacobian_and_mass_matrix(), oomph::DisplacementBasedFoepplvonKarmanEquations::fill_in_contribution_to_jacobian_and_mass_matrix(), oomph::PVDEquationsWithPressure< DIM >::fill_in_contribution_to_jacobian_and_mass_matrix(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::fill_in_contribution_to_jacobian_and_mass_matrix(), oomph::FSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::fill_in_contribution_to_jacobian_and_mass_matrix(), oomph::NodeElementSolidOnlyMortaringElement::fill_in_contribution_to_jacobian_mortared_nodes(), oomph::NodeNodeMortaringElement::fill_in_contribution_to_jacobian_mortared_nodes(), oomph::ConstraintElement::fill_in_contribution_to_residuals(), ZeroResidualGenElement::fill_in_contribution_to_residuals(), oomph::AxisymmetricSolidTractionElement< ELEMENT >::fill_in_contribution_to_residuals(), oomph::ClampedSlidingHermiteBeamBoundaryConditionElement::fill_in_contribution_to_residuals(), oomph::ClampedHermiteShellBoundaryConditionElement::fill_in_contribution_to_residuals(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::fill_in_contribution_to_residuals(), oomph::FSIAxisymmetricLinearElasticityTractionElement< ELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::fill_in_contribution_to_residuals_axisym_fsi_traction(), oomph::AxisymmetricPoroelasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_axisym_poroelasticity_face(), oomph::AxisymmetricPVDEquations::fill_in_contribution_to_residuals_axisym_pvd(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_axisymmetric_linear_elasticity_traction(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::fill_in_contribution_to_residuals_axisymmetric_nst_traction(), oomph::KirchhoffLoveBeamEquations::fill_in_contribution_to_residuals_beam(), oomph::DarcyFaceElement< ELEMENT >::fill_in_contribution_to_residuals_darcy_face(), oomph::PoroelasticityFaceElement< ELEMENT >::fill_in_contribution_to_residuals_darcy_face(), oomph::FourierDecomposedTimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::fill_in_contribution_to_residuals_helmholtz_traction(), oomph::TimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::fill_in_contribution_to_residuals_helmholtz_traction(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::fill_in_contribution_to_residuals_helmholtz_traction(), oomph::LinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_linear_elasticity_traction(), oomph::KirchhoffLoveShellEquations::fill_in_contribution_to_residuals_shell(), oomph::SolidTractionElement< ELEMENT >::fill_in_contribution_to_residuals_solid_traction(), oomph::NonlinearSurfaceContactElement< ELEMENT >::fill_in_contribution_to_residuals_surface_contact(), oomph::LinearSurfaceContactElement< ELEMENT >::fill_in_contribution_to_residuals_surface_contact(), oomph::HeatedLinearSurfaceContactElement< ELEMENT >::fill_in_contribution_to_residuals_surface_contact(), oomph::SurfaceMeltElement< ELEMENT >::fill_in_contribution_to_residuals_surface_melt(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_time_harmonic_fourier_decomposed_linear_elasticity_traction(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_time_harmonic_linear_elasticity_traction(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::fill_in_contribution_to_residuals_time_harmonic_linear_elasticity_traction(), oomph::AxisymmetricLinearElasticityEquations::fill_in_generic_contribution_to_residuals_axisymmetric_linear_elasticity(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::fill_in_generic_contribution_to_residuals_displ_lagr_multiplier(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::fill_in_generic_contribution_to_residuals_fourier_decomp_time_harmonic_linear_elasticity(), oomph::FSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::fill_in_generic_contribution_to_residuals_fsi_displ_lagr_multiplier(), oomph::HomogenisedLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_linear_elasticity(), oomph::LinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_linear_elasticity(), oomph::RefineableLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_linear_elasticity(), oomph::ImposeImpenetrabilityElement< ELEMENT >::fill_in_generic_contribution_to_residuals_parall_lagr_multiplier(), oomph::ImposeParallelOutflowElement< ELEMENT >::fill_in_generic_contribution_to_residuals_parall_lagr_multiplier(), oomph::RefineableQDPVDElement< DIM, NNODE_1D >::fill_in_generic_contribution_to_residuals_pvd(), oomph::RefineablePVDEquations< DIM >::fill_in_generic_contribution_to_residuals_pvd(), oomph::PVDEquations< DIM >::fill_in_generic_contribution_to_residuals_pvd(), oomph::ScaleCoupledElement< ELEMENT >::fill_in_generic_contribution_to_residuals_pvd(), oomph::VolumeCoupledElement< ELEMENT >::fill_in_generic_contribution_to_residuals_pvd(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_time_harmonic_linear_elasticity(), oomph::RefineableTimeHarmonicLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_time_harmonic_linear_elasticity(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::fill_in_generic_contribution_to_residuals_time_harmonic_linear_elasticity(), oomph::AxisymmetricNavierStokesEquations::fill_in_generic_dresidual_contribution_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_dresidual_contribution_axi_nst(), oomph::NavierStokesEquations< 2 >::fill_in_generic_dresidual_contribution_nst(), oomph::SolidFiniteElement::fill_in_generic_jacobian_for_solid_ic(), oomph::RefineableSpaceTimeNavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::RefineableSpaceTimeNavierStokesMixedOrderEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::NavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::RefineableNavierStokesEquations< DIM >::fill_in_generic_pressure_advection_diffusion_contribution_nst(), oomph::AxisymmetricPoroelasticityEquations::fill_in_generic_residual_contribution(), oomph::DarcyEquations< DIM >::fill_in_generic_residual_contribution(), PredatorPreyElement::fill_in_generic_residual_contribution(), ABCElement::fill_in_generic_residual_contribution(), oomph::PolarStreamfunctionTractionElement< ELEMENT >::fill_in_generic_residual_contribution(), oomph::PolarNavierStokesTractionElement< ELEMENT >::fill_in_generic_residual_contribution(), oomph::PolarNavierStokesEquations::fill_in_generic_residual_contribution(), oomph::RefineablePolarNavierStokesEquations::fill_in_generic_residual_contribution(), oomph::RefineablePolarStreamfunctionEquations::fill_in_generic_residual_contribution(), oomph::PolarStreamfunctionEquations::fill_in_generic_residual_contribution(), oomph::AdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_adv_diff(), oomph::RefineableAdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_adv_diff(), oomph::SteadyAxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_adv_diff(), oomph::AdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_adv_diff_flux(), oomph::SteadyAxisymAdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_adv_diff_flux(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::fill_in_generic_residual_contribution_adv_diff_react(), oomph::RefineableAdvectionDiffusionReactionEquations< NREAGENT, DIM >::fill_in_generic_residual_contribution_adv_diff_react(), oomph::AxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_axi_adv_diff(), oomph::RefineableAxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_axi_adv_diff(), oomph::AxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::RefineableAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_axisym_poroelastic_fsi(), oomph::AxisymmetricPVDEquationsWithPressure::fill_in_generic_residual_contribution_axisym_pvd_with_pressure(), oomph::BiharmonicEquations< DIM >::fill_in_generic_residual_contribution_biharmonic(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_cons_adv_diff(), oomph::RefineableGeneralisedAdvectionDiffusionEquations< DIM >::fill_in_generic_residual_contribution_cons_adv_diff(), oomph::RefineableGeneralisedAxisymAdvectionDiffusionEquations::fill_in_generic_residual_contribution_cons_axisym_adv_diff(), oomph::NavierStokesFluxControlElement< ELEMENT >::fill_in_generic_residual_contribution_fluid_traction(), oomph::NavierStokesSpaceTimeTractionElement< ELEMENT >::fill_in_generic_residual_contribution_fluid_traction(), oomph::NavierStokesMixedOrderSpaceTimeTractionElement< ELEMENT >::fill_in_generic_residual_contribution_fluid_traction(), oomph::NavierStokesTractionElement< ELEMENT >::fill_in_generic_residual_contribution_fluid_traction(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::fill_in_generic_residual_contribution_fluid_traction(), oomph::FluxTransportEquations< DIM >::fill_in_generic_residual_contribution_flux_transport(), oomph::FourierDecomposedHelmholtzEquations::fill_in_generic_residual_contribution_fourier_decomposed_helmholtz(), oomph::FourierDecomposedHelmholtzDtNBoundaryElement< ELEMENT >::fill_in_generic_residual_contribution_fourier_decomposed_helmholtz_DtN_bc(), oomph::FourierDecomposedHelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_fourier_decomposed_helmholtz_flux(), oomph::RefineableFpPressureAdvDiffRobinBCSpaceTimeElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::RefineableFpPressureAdvDiffRobinBCMixedOrderSpaceTimeElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::FpPressureAdvDiffRobinBCSpaceTimeElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::FpPressureAdvDiffRobinBCMixedOrderSpaceTimeElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::FpPressureAdvDiffRobinBCElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::RefineableFpPressureAdvDiffRobinBCElement< ELEMENT >::fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::fill_in_generic_residual_contribution_fsi_no_slip_axisym(), oomph::HelmholtzEquations< DIM >::fill_in_generic_residual_contribution_helmholtz(), oomph::RefineableHelmholtzEquations< DIM >::fill_in_generic_residual_contribution_helmholtz(), oomph::PMLHelmholtzEquations< DIM >::fill_in_generic_residual_contribution_helmholtz(), oomph::RefineablePMLHelmholtzEquations< DIM >::fill_in_generic_residual_contribution_helmholtz(), oomph::HelmholtzAbsorbingBCElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_abc(), oomph::HelmholtzDtNBoundaryElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_DtN_bc(), oomph::HelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux(), oomph::PMLHelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux(), oomph::FourierDecomposedHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux_from_displacement(), oomph::HelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux_from_displacement(), oomph::PMLHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::fill_in_generic_residual_contribution_helmholtz_flux_from_displacement(), oomph::PerturbedSpineLinearisedAxisymmetricFluidInterfaceElement< ELEMENT >::fill_in_generic_residual_contribution_interface(), oomph::FluidInterfaceElement::fill_in_generic_residual_contribution_interface(), oomph::PointFluidInterfaceBoundingElement::fill_in_generic_residual_contribution_interface_boundary(), oomph::LineFluidInterfaceBoundingElement::fill_in_generic_residual_contribution_interface_boundary(), oomph::LinearisedAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_lin_axi_nst(), oomph::LinearWaveEquations< DIM >::fill_in_generic_residual_contribution_lin_wave(), oomph::RefineableLinearWaveEquations< DIM >::fill_in_generic_residual_contribution_lin_wave(), oomph::LinearWaveFluxElement< ELEMENT >::fill_in_generic_residual_contribution_lin_wave_flux(), oomph::LinearisedAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_linearised_axi_nst(), oomph::RefineableLinearisedAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::fill_in_generic_residual_contribution_linearised_nst(), oomph::RefineableLinearisedNavierStokesEquations::fill_in_generic_residual_contribution_linearised_nst(), oomph::MultiPoissonEquations< DIM, NFIELDS >::fill_in_generic_residual_contribution_multi_poisson(), oomph::RefineableSpaceTimeNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::RefineableSpaceTimeNavierStokesMixedOrderEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::NavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::RefineableNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::PeriodicOrbitEquations::fill_in_generic_residual_contribution_orbit(), oomph::PMLFourierDecomposedHelmholtzFluxElement< ELEMENT >::fill_in_generic_residual_contribution_pml_fourier_decomposed_helmholtz_flux(), oomph::PoissonEquations< DIM >::fill_in_generic_residual_contribution_poisson(), oomph::RefineablePoissonEquations< DIM >::fill_in_generic_residual_contribution_poisson(), oomph::PoissonFluxElement< ELEMENT >::fill_in_generic_residual_contribution_poisson_flux(), oomph::RefineablePVDEquationsWithPressure< DIM >::fill_in_generic_residual_contribution_pvd_with_pressure(), oomph::PVDEquationsWithPressure< DIM >::fill_in_generic_residual_contribution_pvd_with_pressure(), oomph::RefineableSphericalAdvectionDiffusionEquations::fill_in_generic_residual_contribution_spherical_adv_diff(), oomph::SphericalAdvectionDiffusionEquations::fill_in_generic_residual_contribution_spherical_adv_diff(), oomph::SphericalAdvectionDiffusionFluxElement< ELEMENT >::fill_in_generic_residual_contribution_spherical_adv_diff_flux(), oomph::RefineableSphericalNavierStokesEquations::fill_in_generic_residual_contribution_spherical_nst(), oomph::SphericalNavierStokesEquations::fill_in_generic_residual_contribution_spherical_nst(), oomph::RefineableSpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::SpaceTimeUnsteadyHeatEquations< 2 >::fill_in_generic_residual_contribution_ust_heat(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::RefineableSpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::RefineableUnsteadyHeatEquations< DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::UnsteadyHeatEquations< DIM >::fill_in_generic_residual_contribution_ust_heat(), oomph::UnsteadyHeatBaseFaceElement< ELEMENT >::fill_in_generic_residual_contribution_ust_heat_flux(), oomph::HeatedPenetratorFluxElement< ELEMENT >::fill_in_generic_residual_contribution_ust_heat_flux(), oomph::UnsteadyHeatFluxPseudoMeltElement< ELEMENT >::fill_in_generic_residual_contribution_ust_heat_flux(), oomph::UnsteadyHeatFluxElement< ELEMENT >::fill_in_generic_residual_contribution_ust_heat_flux(), oomph::LineVolumeConstraintBoundingElement::fill_in_generic_residual_contribution_volume_constraint(), oomph::AxisymmetricVolumeConstraintBoundingElement::fill_in_generic_residual_contribution_volume_constraint(), oomph::SurfaceVolumeConstraintBoundingElement::fill_in_generic_residual_contribution_volume_constraint(), oomph::WomersleyEquations< DIM >::fill_in_generic_residual_contribution_womersley(), oomph::NavierStokesElementWithSingularity< BASIC_NAVIER_STOKES_ELEMENT >::fill_in_generic_residual_contribution_wrapped_nst(), PoissonElementWithSingularity< BASIC_POISSON_ELEMENT >::fill_in_generic_residual_contribution_wrapped_poisson(), oomph::SolidFiniteElement::fill_in_jacobian_for_newmark_accel(), oomph::GeneralisedElement::fill_in_jacobian_from_external_by_fd(), oomph::ElementWithExternalElement::fill_in_jacobian_from_external_interaction_field_by_fd(), oomph::ElementWithExternalElement::fill_in_jacobian_from_external_interaction_geometric_by_fd(), oomph::ElementWithMovingNodes::fill_in_jacobian_from_geometric_data(), oomph::GeneralisedElement::fill_in_jacobian_from_internal_by_fd(), oomph::FiniteElement::fill_in_jacobian_from_nodal_by_fd(), oomph::RefineableElement::fill_in_jacobian_from_nodal_by_fd(), oomph::SolidFiniteElement::fill_in_jacobian_from_solid_position_by_fd(), oomph::RefineableSolidElement::fill_in_jacobian_from_solid_position_by_fd(), RefineableQCrouzeixRaviartElementWithExternalElement< DIM >::fill_in_off_diagonal_block_analytic(), RefineableQAxisymCrouzeixRaviartBoussinesqElement::fill_in_off_diagonal_block_analytic(), QAxisymCrouzeixRaviartElementWithExternalElement::fill_in_off_diagonal_block_analytic(), RefineableQCrouzeixRaviartElementWithTwoExternalElement< DIM >::fill_in_off_diagonal_block_analytic(), QCrouzeixRaviartElementWithTwoExternalElement< DIM >::fill_in_off_diagonal_block_analytic(), oomph::RefineableNavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::fill_in_off_diagonal_block_analytic(), oomph::NavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::fill_in_off_diagonal_block_analytic(), RefineableBuoyantQCrouzeixRaviartElement< DIM >::fill_in_off_diagonal_jacobian_blocks_analytic(), oomph::RefineableBuoyantQAxisymCrouzeixRaviartElement::fill_in_off_diagonal_jacobian_blocks_analytic(), oomph::RefineableBuoyantQSphericalCrouzeixRaviartElement::fill_in_off_diagonal_jacobian_blocks_analytic(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::fill_in_off_diagonal_jacobian_blocks_analytic(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::fill_in_off_diagonal_jacobian_blocks_analytic(), oomph::DoubleBuoyantQCrouzeixRaviartElement< DIM >::fill_in_off_diagonal_jacobian_blocks_by_fd(), oomph::AxisymmetricQAdvectionCrouzeixRaviartElement::fill_in_off_diagonal_jacobian_blocks_by_fd(), oomph::RefineableDoubleBuoyantQCrouzeixRaviartElement< DIM >::fill_in_off_diagonal_jacobian_blocks_by_fd(), oomph::PseudoSolidNodeUpdateElement< BASIC, SOLID >::fill_in_shape_derivatives(), oomph::PseudoSolidNodeUpdateElement< BASIC, SOLID >::fill_in_shape_derivatives_by_fd(), oomph::RefineablePseudoSolidNodeUpdateElement< BASIC, SOLID >::fill_in_shape_derivatives_by_fd(), fillMatrix(), fillMatrix2(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::fillrand(), fillSpdMatrix(), PeriodicBoundaryHandler::finaliseNewParticleTransmission(), Eigen::SparseMatrix< Scalar_, Options_, StorageIndex_ >::finalize(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::find_distance_to_free_surface(), oomph::LAPACK_QZ::find_eigenvalues(), oomph::BinaryTreeForest::find_neighbours(), oomph::OcTreeForest::find_neighbours(), oomph::QuadTreeForest::find_neighbours(), GlobalParameters::find_node_on_centerline(), find_partition_with_efficiency_higher_than(), find_pivot(), find_subset_with_efficiency_higher_than(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::findGoodComposite(), PeriodicBoundaryHandler::findNewInteractions(), PeriodicBoundaryHandler::findNewParticle(), RefineableRotatingCylinderProblem< ELEMENT >::finish_problem_setup(), OscRingNStProblem< ELEMENT >::finish_problem_setup(), oomph::Multi_domain_functions::first_closer_than_second(), PerturbationSolution::first_order_perturbation_for_plot(), Eigen::TensorEvaluator< const TensorConvolutionOp< Indices, InputArgType, KernelArgType >, Device >::firstInput(), Eigen::TensorReductionEvaluatorBase< const TensorReductionOp< Op, Dims, ArgType, MakePointer_ >, Device >::firstInput(), Eigen::TensorEvaluator< const TensorTraceOp< Dims, ArgType >, Device >::firstInput(), oomph::FishDomain::FishDomain(), FishPoissonProblem< ELEMENT >::FishPoissonProblem(), oomph::LinearisedAxisymmetricQTaylorHoodElement::fix_pressure(), oomph::LinearisedQTaylorHoodElement::fix_pressure(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::fix_pressure(), oomph::LinearisedQCrouzeixRaviartElement::fix_pressure(), FixedSizeBlock(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::fixupL(), FlatPlateMesh< ELEMENT >::FlatPlateMesh(), float_pow_test_impl(), SpineGravityTractionElement< ELEMENT >::flow(), oomph::AxisymmetricPoroelasticityEquations::fluid_body_force(), oomph::FSIWallElement::fluid_load_vector(), oomph::GeneralisedElement::flush_external_data(), PeriodicBoundaryHandler::flushParticles(), oomph::EulerEquations< DIM >::flux(), oomph::DGFaceElement::flux_index(), FluxAndPeriodicBoundarySelfTest::FluxAndPeriodicBoundarySelfTest(), tetgenmesh::fnext(), tetgenmesh::fnextself(), oomph::PoroelasticityEquations< DIM >::force_fluid(), oomph::PoroelasticityEquations< DIM >::force_solid(), format(), Eigen::internal::fortran_to_c_numbering(), FourierDecomposedHelmholtzProblem< ELEMENT >::FourierDecomposedHelmholtzProblem(), oomph::FourierDecomposedTimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::FourierDecomposedTimeHarmonicLinElastLoadedByHelmholtzPressureBCElement(), FpTestProblem::FpTestProblem(), FreeBoundaryPoissonProblem< ELEMENT >::FreeBoundaryPoissonProblem(), FreeSurfaceRotationProblem< ELEMENT >::FreeSurfaceRotationProblem(), oomph::FSIAxisymmetricLinearElasticityTractionElement< ELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::FSIAxisymmetricLinearElasticityTractionElement(), FSIChannelWithLeafletProblem< ELEMENT >::FSIChannelWithLeafletProblem(), FSICollapsibleChannelProblem< ELEMENT >::FSICollapsibleChannelProblem(), oomph::FSIDrivenCavityMesh< ELEMENT >::FSIDrivenCavityMesh(), FSIDrivenCavityProblem< ELEMENT >::FSIDrivenCavityProblem(), FSIRingProblem::FSIRingProblem(), oomph::SpaceTimeNavierStokesEquations< DIM >::full_output(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::full_output(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::full_output(), oomph::NavierStokesEquations< DIM >::full_output(), oomph::PolarNavierStokesEquations::full_output(), oomph::SphericalNavierStokesEquations::full_output(), oomph::MGSolver< DIM >::full_setup(), oomph::HelmholtzMGPreconditioner< DIM >::full_setup(), PerturbationSolution::full_soln(), oomph::FullCircleDomain::FullCircleDomain(), oomph::FullCircleMesh< ELEMENT >::FullCircleMesh(), oomph::RefineableLinearisedAxisymmetricQCrouzeixRaviartElement::further_build(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::further_build(), oomph::RefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::further_build(), oomph::RefineableLinearisedQCrouzeixRaviartElement::further_build(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::further_build(), oomph::RefineableQCrouzeixRaviartElement< DIM >::further_build(), oomph::RefineablePolarCrouzeixRaviartElement::further_build(), oomph::RefineableQPVDElementWithPressure< DIM >::further_build(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::further_setup_hanging_nodes(), oomph::RefineableLinearisedQTaylorHoodElement::further_setup_hanging_nodes(), CRBond_Bessel::gamma(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::gatherPacket(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::gatherPacket(), Eigen::internal::GaussianGenerator< T, Index, NumDims >::GaussianGenerator(), oomph::GaussLegendre< 1, NPTS_1D >::GaussLegendre(), oomph::GaussLegendre< 2, NPTS_1D >::GaussLegendre(), oomph::GaussLegendre< 3, NPTS_1D >::GaussLegendre(), oomph::GaussLobattoLegendre< 1, NPTS_1D >::GaussLobattoLegendre(), oomph::GaussLobattoLegendre< 2, NPTS_1D >::GaussLobattoLegendre(), oomph::GaussLobattoLegendre< 3, NPTS_1D >::GaussLobattoLegendre(), Eigen::internal::gemm_unrolled_row_iteration(), Eigen::internal::gemmKernel(), gemv_col(), gemv_complex_col(), gemv_complex_row(), gemv_row(), Eigen::TensorEvaluator< const TensorPairReducerOp< ReduceOp, Dims, ArgType >, Device >::gen_strides(), oomph::GeneralElasticityTensor::GeneralElasticityTensor(), InsertionBoundary::generateParticle(), PolydisperseInsertionBoundary::generateParticle(), GenerateRandomData(), Eigen::generateRandomUnitaryMatrix(), TurekProblem< FLUID_ELEMENT, SOLID_ELEMENT >::generic_actions_after(), rapidjson::GenericValue< Encoding, Allocator >::GenericValue(), oomph::PerturbedSpine::geom_data_pt(), oomph::Spine::geom_data_pt(), oomph::AlgebraicMesh::geom_object_list_pt(), oomph::PerturbedSpine::geom_object_pt(), oomph::AlgebraicNode::geom_object_pt(), oomph::MacroElementNodeUpdateNode::geom_object_pt(), oomph::MacroElementNodeUpdateElementBase::geom_object_pt(), oomph::Spine::geom_object_pt(), oomph::PerturbedSpine::geom_parameter(), oomph::Spine::geom_parameter(), oomph::ElementWithMovingNodes::geometric_data_local_eqn(), oomph::GeompackQuadScaffoldMesh::GeompackQuadScaffoldMesh(), Eigen::IndexList< FirstType, OtherTypes >::get(), Eigen::internal::tuple_coeff< Idx, ValueT >::get(), oomph::MapMatrixMixed< KEY_TYPE_ROW, KEY_TYPE_COL, VALUE_TYPE >::get(), DPMBase::get1DParametersFromRunNumber(), DPMBase::get2DParametersFromRunNumber(), DPMBase::get3DParametersFromRunNumber(), oomph::EigenProblemHandler::get_all_vectors_and_matrices(), oomph::SumOfMatrices::get_as_indices(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_base_flow_d_dudx_dX(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_base_flow_duds(), LinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_duds(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_base_flow_dudt(), LinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_dudt(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_base_flow_dudx(), LinearisedAxisymmetricQTaylorHoodMultiDomainElement::get_base_flow_dudx(), LinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_dudx(), RefineableLinearisedAxisymmetricQTaylorHoodMultiDomainElement::get_base_flow_dudx(), RefineableLinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_dudx(), oomph::LinearisedNavierStokesEquations::get_base_flow_dudx(), LinearisedQTaylorHoodMultiDomainElement::get_base_flow_dudx(), LinearisedQCrouzeixRaviartMultiDomainElement::get_base_flow_dudx(), RefineableLinearisedQTaylorHoodMultiDomainElement::get_base_flow_dudx(), RefineableLinearisedQCrouzeixRaviartMultiDomainElement::get_base_flow_dudx(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_base_flow_u(), LinearisedAxisymmetricQTaylorHoodMultiDomainElement::get_base_flow_u(), LinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_u(), RefineableLinearisedAxisymmetricQTaylorHoodMultiDomainElement::get_base_flow_u(), RefineableLinearisedAxisymmetricQCrouzeixRaviartMultiDomainElement::get_base_flow_u(), oomph::LinearisedNavierStokesEquations::get_base_flow_u(), LinearisedQTaylorHoodMultiDomainElement::get_base_flow_u(), LinearisedQCrouzeixRaviartMultiDomainElement::get_base_flow_u(), RefineableLinearisedQTaylorHoodMultiDomainElement::get_base_flow_u(), RefineableLinearisedQCrouzeixRaviartMultiDomainElement::get_base_flow_u(), oomph::RefineableQElement< 3 >::get_bcs(), NonRefineableBinArray::get_bin(), NonRefineableBinArray::get_bin_vertices(), oomph::BlockPreconditioner< MATRIX >::get_block(), oomph::BlockPreconditioner< MATRIX >::get_block_other_matrix(), oomph::BlockPreconditioner< MATRIX >::get_block_vectors(), oomph::BlockPreconditioner< CRDoubleMatrix >::get_block_vectors(), oomph::BlockPreconditioner< MATRIX >::get_blocks(), oomph::PolarNavierStokesEquations::get_body_force(), RefineableQAxisymCrouzeixRaviartBoussinesqElement::get_body_force_axi_nst(), oomph::RefineableBuoyantQAxisymCrouzeixRaviartElement::get_body_force_axi_nst(), QAxisymCrouzeixRaviartElementWithExternalElement::get_body_force_axi_nst(), oomph::AxisymmetricNavierStokesEquations::get_body_force_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_body_force_axi_nst(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_body_force_base_flow(), oomph::AxisymmetricNavierStokesEquations::get_body_force_gradient_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_body_force_gradient_axi_nst(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_body_force_gradient_base_flow(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_body_force_gradient_nst(), oomph::NavierStokesEquations< DIM >::get_body_force_gradient_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::get_body_force_gradient_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::get_body_force_gradient_nst(), oomph::RefineableNavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_body_force_nst(), RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_body_force_nst(), RefineableQCrouzeixRaviartElementWithExternalElement< DIM >::get_body_force_nst(), oomph::DoubleBuoyantQCrouzeixRaviartElement< DIM >::get_body_force_nst(), RefineableQCrouzeixRaviartElementWithTwoExternalElement< DIM >::get_body_force_nst(), QCrouzeixRaviartElementWithTwoExternalElement< DIM >::get_body_force_nst(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_body_force_nst(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::get_body_force_nst(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_body_force_nst(), oomph::NavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_body_force_nst(), oomph::NavierStokesEquations< DIM >::get_body_force_nst(), oomph::RefineableBuoyantQSphericalCrouzeixRaviartElement::get_body_force_spherical_nst(), oomph::SphericalNavierStokesEquations::get_body_force_spherical_nst(), oomph::RefineableQElement< 3 >::get_boundaries(), oomph::QElement< 1, NNODE_1D >::get_bulk_node_number(), oomph::QElement< 2, NNODE_1D >::get_bulk_node_number(), oomph::QElement< 3, NNODE_1D >::get_bulk_node_number(), oomph::TElement< 2, NNODE_1D >::get_bulk_node_number(), oomph::TElement< 3, NNODE_1D >::get_bulk_node_number(), oomph::FiniteElement::get_centre_of_gravity_and_max_radius_in_terms_of_zeta(), oomph::Z2ErrorEstimator::get_combined_error_estimate(), oomph::UnstructuredTwoDMeshGeometryBase::get_connected_vertex_number_on_destination_polyline(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::get_conserved_wind_cons_adv_diff(), oomph::get_conserved_wind_cons_axisym_adv_diff(), oomph::BoundaryNodeBase::get_coordinates_on_boundary(), RefineableQAxisymCrouzeixRaviartBoussinesqElement::get_dbody_force_axi_nst_dexternal_element_data(), QAxisymCrouzeixRaviartElementWithExternalElement::get_dbody_force_axi_nst_dexternal_element_data(), RefineableQCrouzeixRaviartElementWithExternalElement< DIM >::get_dbody_force_nst_dexternal_element_data(), RefineableQCrouzeixRaviartElementWithTwoExternalElement< DIM >::get_dbody_force_nst_dexternal_element_data(), QCrouzeixRaviartElementWithTwoExternalElement< DIM >::get_dbody_force_nst_dexternal_element_data(), oomph::RefineableNavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_dbody_force_nst_dexternal_element_data(), oomph::NavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_dbody_force_nst_dexternal_element_data(), oomph::PVDEquationsBase< DIM >::get_deformed_covariant_basis_vectors(), oomph::PoissonEquations< DIM >::get_dflux_dnodal_u(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::get_diff_cons_adv_diff(), oomph::get_diff_cons_axisym_adv_diff(), oomph::ElementWithMovingNodes::get_dnodal_coordinates_dgeom_dofs(), oomph::MultiPoissonEquations< DIM, NFIELDS >::get_dof_numbers_for_unknowns(), oomph::PseudoElasticBulkElement< ELEMENT >::get_dof_numbers_for_unknowns(), oomph::MyTaylorHoodElement< DIM >::get_dof_numbers_for_unknowns(), oomph::MyLinearElasticityElement< DIM >::get_dof_numbers_for_unknowns(), oomph::AxisymmetricLinearElasticityEquationsBase::get_dof_numbers_for_unknowns(), oomph::FSIHermiteBeamElement::get_dof_numbers_for_unknowns(), oomph::LinearElasticityEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::ImposeImpenetrabilityElement< ELEMENT >::get_dof_numbers_for_unknowns(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::FSIDiagHermiteShellElement::get_dof_numbers_for_unknowns(), oomph::ClampedHermiteShellBoundaryConditionElement::get_dof_numbers_for_unknowns(), oomph::PVDEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::PVDEquationsWithPressure< DIM >::get_dof_numbers_for_unknowns(), oomph::FSISolidTractionElement< ELEMENT, DIM >::get_dof_numbers_for_unknowns(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::get_dof_numbers_for_unknowns(), oomph::FSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::get_dof_numbers_for_unknowns(), oomph::QTaylorHoodSpaceTimeElement< 2 >::get_dof_numbers_for_unknowns(), oomph::BlockPrecQTaylorHoodSpaceTimeElement::get_dof_numbers_for_unknowns(), oomph::BlockPrecQTaylorHoodMixedOrderSpaceTimeElement::get_dof_numbers_for_unknowns(), oomph::BlockPrecQUnsteadyHeatSpaceTimeElement< SPATIAL_DIM, NNODE_1D >::get_dof_numbers_for_unknowns(), oomph::BlockPrecRefineableQUnsteadyHeatSpaceTimeElement< SPATIAL_DIM, NNODE_1D >::get_dof_numbers_for_unknowns(), oomph::BlockPrecQUnsteadyHeatMixedOrderSpaceTimeElement< SPATIAL_DIM, NNODE_1D >::get_dof_numbers_for_unknowns(), oomph::BlockPrecRefineableQUnsteadyHeatMixedOrderSpaceTimeElement< SPATIAL_DIM, NNODE_1D >::get_dof_numbers_for_unknowns(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::get_dof_numbers_for_unknowns(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::Problem::get_dofs(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::get_dofs_for_element(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::get_drag_and_torque(), RefineableModalPoissonEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::AxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::RefineableAxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::get_dresidual_dnodal_coordinates(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::FiniteElement::get_dresidual_dnodal_coordinates(), oomph::RefineableElement::get_dresidual_dnodal_coordinates(), oomph::NavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::NavierStokesEquations< 2 >::get_dresidual_dnodal_coordinates(), oomph::RefineableNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::RefineablePoissonEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::SpaceTimeNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::RefineableSpaceTimeNavierStokesEquations< DIM >::get_dresidual_dnodal_coordinates(), oomph::FoldHandler::get_dresiduals_dparameter(), oomph::PitchForkHandler::get_dresiduals_dparameter(), oomph::HopfHandler::get_dresiduals_dparameter(), oomph::SpaceTimeNavierStokesEquations< DIM >::get_du_dt(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::get_du_dt(), oomph::Problem::get_dvaluesdt(), RefineableQAdvectionDiffusionElementWithExternalElement< DIM >::get_dwind_adv_diff_dexternal_element_data(), QAdvectionDiffusionElementWithExternalElement< DIM >::get_dwind_adv_diff_dexternal_element_data(), oomph::RefineableAdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::get_dwind_adv_diff_dexternal_element_data(), oomph::AdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::get_dwind_adv_diff_dexternal_element_data(), RefineableQAxisymAdvectionDiffusionBoussinesqElement::get_dwind_axi_adv_diff_dexternal_element_data(), QAxisymAdvectionDiffusionElementWithExternalElement::get_dwind_axi_adv_diff_dexternal_element_data(), oomph::Z2ErrorEstimator::get_element_errors(), oomph::DummyErrorEstimator::get_element_errors(), oomph::KirchhoffLoveShellEquations::get_energy(), oomph::PVDEquationsBase< DIM >::get_energy(), oomph::KirchhoffLoveBeamEquations::get_energy(), oomph::DenseMatrix< T >::get_entry(), oomph::CRMatrix< T >::get_entry(), oomph::CCMatrix< T >::get_entry(), oomph::MyProblem::get_error_norm(), PlanarWave::get_exact_u(), ProblemParameters::get_exact_u(), GlobalParameters::get_exact_u(), TanhSolnForMultiPoisson::get_exact_u(), oomph::BlockPreconditioner< MATRIX >::get_fine_grain_dof_types_in(), SpineGravityTractionElement< ELEMENT >::get_flux(), oomph::Problem::get_hessian_vector_products(), oomph::ImmersedRigidBodyTriangleMeshPolygon::get_initial_position(), ABCElement::get_inner_product_matrix(), oomph::PeriodicOrbitBaseElement::get_inner_product_matrix(), oomph::GeneralisedElement::get_inner_product_vectors(), oomph::RefineableLinearElasticityEquations< DIM >::get_interpolated_values(), oomph::VorticitySmootherElement< ELEMENT >::get_interpolated_values(), oomph::RefineableTimeHarmonicLinearElasticityEquations< DIM >::get_interpolated_values(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::get_interpolated_values(), oomph::RefineableLinearisedAxisymmetricQCrouzeixRaviartElement::get_interpolated_values(), RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::RefineableBuoyantQAxisymCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableBuoyantQSphericalCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableDoubleBuoyantQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::RefineablePolarStreamfunctionEquations::get_interpolated_values(), oomph::RefineableAxisymmetricQTaylorHoodElement::get_interpolated_values(), oomph::RefineableAxisymmetricQCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableGeneralisedNewtonianAxisymmetricQTaylorHoodElement::get_interpolated_values(), oomph::RefineableGeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::get_interpolated_values(), oomph::RefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::RefineableLinearisedQCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableLinearisedQTaylorHoodElement::get_interpolated_values(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::RefineableQTaylorHoodElement< DIM >::get_interpolated_values(), oomph::RefineableQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::get_interpolated_values(), oomph::RefineablePolarTaylorHoodElement::get_interpolated_values(), oomph::RefineablePolarCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableQTaylorHoodSpaceTimeElement< DIM >::get_interpolated_values(), oomph::RefineableQTaylorHoodMixedOrderSpaceTimeElement< DIM >::get_interpolated_values(), oomph::RefineableQSphericalTaylorHoodElement::get_interpolated_values(), oomph::RefineableQSphericalCrouzeixRaviartElement::get_interpolated_values(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableAxisymmetricQTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableGeneralisedNewtonianAxisymmetricQTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableLinearisedQTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableQSphericalTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::get_interpolating_node_at_local_coordinate(), oomph::RefineableQTaylorHoodElement< DIM >::get_interpolating_node_at_local_coordinate(), oomph::RefineablePolarTaylorHoodElement::get_interpolating_node_at_local_coordinate(), oomph::RefineableQPVDElementWithContinuousPressure< DIM >::get_interpolating_node_at_local_coordinate(), oomph::RefineableQTaylorHoodSpaceTimeElement< DIM >::get_interpolating_node_at_local_coordinate(), oomph::RefineableQTaylorHoodMixedOrderSpaceTimeElement< DIM >::get_interpolating_node_at_local_coordinate(), oomph::Problem::get_inverse_mass_matrix_times_residuals(), oomph::PitchForkHandler::get_jacobian(), oomph::FpPreconditionerAssemblyHandler::get_jacobian(), BrethertonElement< ELEMENT >::get_jacobian(), TwoNodePoissonElement::get_jacobian(), oomph::Hijacked< ELEMENT >::get_jacobian(), oomph::ImposeFluxForWomersleyElement< DIM >::get_jacobian(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_kinetic_energy_flux(), oomph::PolarCrouzeixRaviartElement::get_load_data(), oomph::PolarTaylorHoodElement::get_load_data(), oomph::PerturbedSpineElement< ELEMENT >::get_local_eqn_number_corresponding_to_geometric_dofs(), oomph::LineVisualiser::get_local_plot_points_coordinates(), oomph::RefineablePVDEquationsWithPressure< DIM >::get_mass_matrix_diagonal(), oomph::PVDEquationsWithPressure< DIM >::get_mass_matrix_diagonal(), oomph::CRDoubleMatrix::get_matrix_transpose(), oomph::SCoupledElement< ELEMENT >::get_momentum_and_energy(), oomph::VolumeCoupledElement< ELEMENT >::get_momentum_and_energy(), BinArray::get_neighbouring_bins_helper(), oomph::VolumeCoupledElement< ELEMENT >::get_nodal_coupling_residual(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::get_node_at_local_coordinate(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::get_node_at_local_coordinate(), oomph::QElement< 2, NNODE_1D >::get_node_at_local_coordinate(), oomph::QElement< 3, NNODE_1D >::get_node_at_local_coordinate(), oomph::FiniteElement::get_node_number(), NodeReordering::get_node_reordering(), oomph::Mesh::get_node_reordering(), ABCElement::get_non_external_ddofs_dt(), ABCElement::get_non_external_dofs(), oomph::KirchhoffLoveBeamEquations::get_non_unit_tangent(), oomph::KirchhoffLoveShellEquations::get_normal(), oomph::KirchhoffLoveBeamEquations::get_normal(), oomph::BlockDiagonalPreconditioner< MATRIX >::get_other_diag_ds(), oomph::BlockAntiDiagonalPreconditioner< MATRIX >::get_other_diag_ds(), ThreeDimBethertonProblem< ELEMENT >::get_outflow(), oomph::LineVisualiser::get_output_data(), oomph::NavierStokesSchurComplementPreconditioner::get_pressure_advection_diffusion_matrix(), oomph::AxisymmetricNavierStokesEquations::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::NavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::RefineableNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::SpaceTimeNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::RefineableSpaceTimeNavierStokesEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::RefineableSpaceTimeNavierStokesMixedOrderEquations< DIM >::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::SphericalNavierStokesEquations::get_pressure_and_velocity_mass_matrix_diagonal(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::get_previous_dofs_for_element(), oomph::PVDEquationsBase< DIM >::get_principal_stress(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_rate_of_traction_work(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_rate_of_traction_work_components(), oomph::Z2ErrorEstimator::get_recovered_flux_in_patch(), oomph::VorticitySmoother< ELEMENT >::get_recovered_vorticity_in_patch(), oomph::FoldHandler::get_residuals(), oomph::PitchForkHandler::get_residuals(), oomph::HopfHandler::get_residuals(), oomph::FpPreconditionerAssemblyHandler::get_residuals(), TwoNodePoissonElement::get_residuals(), oomph::Hijacked< ELEMENT >::get_residuals(), oomph::QHermiteElement< DIM >::get_s_plot(), oomph::QElement< 1, NNODE_1D >::get_s_plot(), oomph::QElement< 2, NNODE_1D >::get_s_plot(), oomph::QElement< 3, NNODE_1D >::get_s_plot(), oomph::QSpectralElement< 1, NNODE_1D >::get_s_plot(), oomph::QSpectralElement< 2, NNODE_1D >::get_s_plot(), oomph::QSpectralElement< 3, NNODE_1D >::get_s_plot(), oomph::TElement< 1, NNODE_1D >::get_s_plot(), oomph::TElement< 2, NNODE_1D >::get_s_plot(), oomph::TElement< 3, NNODE_1D >::get_s_plot(), oomph::PolarStressIntegralElement< ELEMENT >::get_shear_stress(), oomph::RefineableSolidQElement< 3 >::get_solid_bcs(), oomph::SegregatableFSIProblem::get_solid_change(), oomph::AxisymmetricNavierStokesEquations::get_source_fct_gradient(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::get_source_fct_gradient(), oomph::LinearisedAxisymmetricNavierStokesEquations::get_source_gradient_base_flow(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_source_gradient_nst(), oomph::NavierStokesEquations< DIM >::get_source_gradient_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::get_source_gradient_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::get_source_gradient_nst(), oomph::PoissonEquations< DIM >::get_source_gradient_poisson(), oomph::MultiPoissonEquations< DIM, NFIELDS >::get_source_multi_poisson(), oomph::YoungLaplaceEquations::get_spine(), oomph::YoungLaplaceEquations::get_spine_base(), oomph::AxisymmetricLinearElasticityEquations::get_strain(), oomph::LinearElasticityEquationsBase< DIM >::get_strain(), oomph::PoroelasticityEquations< DIM >::get_strain(), oomph::PVDEquationsBase< DIM >::get_strain(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::get_strain(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::get_strain(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::get_strain(), oomph::KirchhoffLoveShellEquations::get_strain_and_bend(), oomph::PVDEquations< DIM >::get_stress(), oomph::PVDEquationsWithPressure< DIM >::get_stress(), oomph::LinearElasticityEquations< DIM >::get_stress(), oomph::PoroelasticityEquations< DIM >::get_stress(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM >::get_stress(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::get_stress(), oomph::OcTree::get_the_other_face(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::get_total_flux(), oomph::get_total_flux(), oomph::FSILinearisedAxisymPoroelasticTractionElement< POROELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::get_traction(), oomph::NavierStokesTractionElement< ELEMENT >::get_traction(), oomph::NavierStokesSpaceTimeTractionElement< ELEMENT >::get_traction(), oomph::NavierStokesMixedOrderSpaceTimeTractionElement< ELEMENT >::get_traction(), oomph::AxisymmetricSolidTractionElement< ELEMENT >::get_traction(), oomph::FSISolidTractionElement< ELEMENT, DIM >::get_traction(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_traction(), oomph::NavierStokesEquations< DIM >::get_traction(), oomph::PolarNavierStokesEquations::get_traction(), oomph::SpaceTimeNavierStokesEquations< DIM >::get_traction(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::get_traction(), oomph::SphericalNavierStokesEquations::get_traction(), oomph::PolarNavierStokesTractionElement< ELEMENT >::get_traction(), oomph::WomersleyEquations< DIM >::get_volume_flux(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::get_volume_flux(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::get_volume_flux(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::get_vorticity(), oomph::NavierStokesEquations< DIM >::get_vorticity(), oomph::SpaceTimeNavierStokesEquations< DIM >::get_vorticity(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::get_vorticity(), oomph::SphericalNavierStokesEquations::get_vorticity(), oomph::AdvectionDiffusionEquations< DIM >::get_wind_adv_diff(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::get_wind_adv_diff_react(), oomph::AxisymAdvectionDiffusionEquations::get_wind_axi_adv_diff(), oomph::SteadyAxisymAdvectionDiffusionEquations::get_wind_axisym_adv_diff(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::get_wind_cons_adv_diff(), oomph::get_wind_cons_axisym_adv_diff(), oomph::ScalarAdvectionEquations< DIM >::get_wind_scalar_adv(), oomph::SphericalAdvectionDiffusionEquations::get_wind_spherical_adv_diff(), SolidProblem< ELEMENT_TYPE >::get_x(), oomph::QSolidElementBase::get_x_and_xi(), oomph::QElementBase::get_x_from_macro_element(), RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_Z2_compound_flux_indices(), oomph::RefineableBuoyantQAxisymCrouzeixRaviartElement::get_Z2_compound_flux_indices(), oomph::RefineableBuoyantQSphericalCrouzeixRaviartElement::get_Z2_compound_flux_indices(), oomph::RefineableDoubleBuoyantQCrouzeixRaviartElement< DIM >::get_Z2_compound_flux_indices(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_Z2_compound_flux_indices(), oomph::RefineableLinearisedAxisymmetricNavierStokesEquations::get_Z2_flux(), get_Z2_flux(), RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_Z2_flux(), oomph::RefineableBuoyantQAxisymCrouzeixRaviartElement::get_Z2_flux(), oomph::RefineableBuoyantQSphericalCrouzeixRaviartElement::get_Z2_flux(), oomph::RefineableDoubleBuoyantQCrouzeixRaviartElement< DIM >::get_Z2_flux(), oomph::TAxisymmetricLinearElasticityElement< NNODE_1D >::get_Z2_flux(), oomph::RefineableAxisymmetricNavierStokesEquations::get_Z2_flux(), oomph::AxisymmetricTCrouzeixRaviartElement::get_Z2_flux(), oomph::AxisymmetricTTaylorHoodElement::get_Z2_flux(), oomph::TFourierDecomposedHelmholtzElement< NNODE_1D >::get_Z2_flux(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::get_Z2_flux(), oomph::GeneralisedNewtonianAxisymmetricTCrouzeixRaviartElement::get_Z2_flux(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::get_Z2_flux(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::get_Z2_flux(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::get_Z2_flux(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::get_Z2_flux(), oomph::RefineableHelmholtzEquations< DIM >::get_Z2_flux(), oomph::THelmholtzElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::RefineableLinearElasticityEquations< DIM >::get_Z2_flux(), oomph::TLinearElasticityElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::RefineableLinearisedNavierStokesEquations::get_Z2_flux(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_Z2_flux(), oomph::RefineableNavierStokesEquations< DIM >::get_Z2_flux(), oomph::TCrouzeixRaviartElement< DIM >::get_Z2_flux(), oomph::TTaylorHoodElement< DIM >::get_Z2_flux(), oomph::TPMLFourierDecomposedHelmholtzElement< NNODE_1D >::get_Z2_flux(), oomph::RefineablePMLHelmholtzEquations< DIM >::get_Z2_flux(), oomph::TPMLHelmholtzElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::TPMLTimeHarmonicLinearElasticityElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::RefineablePolarNavierStokesEquations::get_Z2_flux(), oomph::RefineablePVDEquations< DIM >::get_Z2_flux(), oomph::RefineablePVDEquationsWithPressure< DIM >::get_Z2_flux(), oomph::TPVDElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::TPVDBubbleEnrichedElement< DIM, NNODE_1D >::get_Z2_flux(), oomph::TPVDElementWithContinuousPressure< DIM >::get_Z2_flux(), oomph::RefineableSpaceTimeNavierStokesEquations< DIM >::get_Z2_flux(), oomph::RefineableSpaceTimeNavierStokesMixedOrderEquations< DIM >::get_Z2_flux(), oomph::RefineableSphericalNavierStokesEquations::get_Z2_flux(), oomph::TTimeHarmonicFourierDecomposedLinearElasticityElement< NNODE_1D >::get_Z2_flux(), oomph::RefineableTimeHarmonicLinearElasticityEquations< DIM >::get_Z2_flux(), oomph::TTimeHarmonicLinearElasticityElement< DIM, NNODE_1D >::get_Z2_flux(), Eigen::internal::getAdjointVal(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::getBaseOffsetFromIndex(), Eigen::TensorEvaluator< const TensorShufflingOp< Shuffle, ArgType >, Device >::GetBlockOutputIndex(), HGrid::getBucketIsChecked(), HGrid::getCellSize(), NurbsSurface::getDistance(), BasicIntersectionOfWalls::getDistanceAndNormal(), TriangulatedWall::Face::getDistanceAndNormal(), IntersectionOfWalls::getDistanceAndNormal(), LevelSetWall::getDistanceAndNormalLabCoordinates(), SolidProblem< ELEMENT_TYPE >::getDomainSize(), InteractionHandler::getExistingInteraction(), SolidifyingLiquidMigrationWilletInteraction::getFieldVTK(), SinterInteraction::getFieldVTK(), ClumpParticle::getFieldVTK(), HeatFluidCoupled< Particle >::getFieldVTK(), LiquidFilm< Particle >::getFieldVTK(), MeltableParticle::getFieldVTK(), HGrid::getFirstBaseParticleInBucket(), csvReader::getFirstColumn(), ParticleHandler::getHighestPositionComponentParticle(), ParticleHandler::getHighestPositionComponentParticleLocal(), ParticleHandler::getHighestVelocityComponentParticle(), ParticleHandler::getHighestVelocityComponentParticleLocal(), Eigen::TensorEvaluator< const TensorInflationOp< Strides, ArgType >, Device >::getInputIndex(), GetInputIndex(), InteractionHandler::getInteraction(), BaseParticle::getInteractionDistance(), BaseWall::getInteractionWith(), TriangleMeshWall::getInteractionWith(), HGrid::getInvCellSize(), SuperQuadricParticle::getJacobianOfContactDetectionObjective(), getLinearFit(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::getLinearMapper(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::getLinearMapper(), Eigen::internal::TensorContractionSubMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::getLinearMapper(), Eigen::internal::TensorContractionInputMapper< Scalar_, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::getLinearMapper(), LiquidMigrationPeriodicBoundaryInteraction::getLiquidBridgeVolume(), InteractionHandler::getLiquidBridgeVolume(), LiquidFilm< Particle >::getLiquidBridgeVolume(), ParticleHandler::getLiquidFilmVolume(), Domain::getLocalIndex(), ParticleHandler::getLowestPositionComponentParticle(), ParticleHandler::getLowestPositionComponentParticleLocal(), ParticleHandler::getLowestVelocityComponentParticle(), ParticleHandler::getLowestVelocityComponentParticleLocal(), Eigen::internal::GetMarketLine(), SolidProblem< ELEMENT_TYPE >::getMassMomentumEnergy(), SolidifyingLiquidMigrationWilletInteraction::getNameVTK(), SinterInteraction::getNameVTK(), ClumpParticle::getNameVTK(), HeatFluidCoupled< Particle >::getNameVTK(), LiquidFilm< Particle >::getNameVTK(), MeltableParticle::getNameVTK(), InteractionHandler::getNumberOfLiquidBridges(), InteractionHandler::getNumberOfWallContacts(), BasicIntersectionOfWalls::getObject(), BasicUnionOfWalls::getObject(), HGridOptimiser::getOptimalDistribution(), DomainHandler::getParticleDomainGlobalIndex(), CGFields::StandardFields::getParticleSizeDensity(), CGFields::StandardFields::getParticleSizeMomenta(), ClumpParticle::getPebblePositions(), CG< Coordinates, BaseFunction, Fields >::getPoint(), VolumeCoupling::getProjectionAndProjected(), VolumeCoupling::getProjectionMatrix(), ParticleHandler::getPSD(), BaseWall::getRenderedWall(), SmallMatrix< numberOfRows, numberOfColumns >::getRow(), SCoupling< M, O >::getSCoupledElements(), csvReader::getSecondColumn(), DPMBase::getStaticStress(), Eigen::ThreadPoolTempl< Environment >::GetStealPartition(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::getSubMapper(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::getSubMapper(), Eigen::internal::TensorContractionSubMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::getSubMapper(), Eigen::internal::TensorContractionInputMapper< Scalar_, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::getSubMapper(), LiquidMigrationLSInteraction::getTotalLiquidBridgeVolume(), LiquidMigrationWilletInteraction::getTotalLiquidBridgeVolume(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::getVectorMapper(), Eigen::internal::TensorContractionInputMapper< Scalar_, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::getVectorMapper(), TriangleWall::getVertex(), WearableNurbsWall::getVolumeUnderSurface(), WearableNurbsWall::getVolumeUnderSurfaceX(), BasicIntersectionOfWalls::getVTK(), BasicUnionOfWalls::getVTK(), oomph::Orthpoly::gl_nodes(), oomph::Orthpoly::gll_nodes(), oomph::Problem::global_data_pt(), oomph::Problem::global_dof_pt(), oomph::PitchForkHandler::global_eqn_number(), oomph::PMLHelmholtzPowerElement< ELEMENT >::global_flux_contribution(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::global_flux_contribution_from_helmholtz(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::global_flux_contribution_from_solid(), oomph::CRDoubleMatrix::global_matrix(), oomph::TetgenScaffoldMesh::global_node_number(), oomph::TriangleScaffoldMesh::global_node_number(), oomph::FourierDecomposedHelmholtzBCElementBase< ELEMENT >::global_power_contribution(), oomph::HelmholtzBCElementBase< ELEMENT >::global_power_contribution(), oomph::PMLFourierDecomposedHelmholtzPowerMonitorElement< ELEMENT >::global_power_contribution(), oomph::PMLHelmholtzPowerElement< ELEMENT >::global_power_contribution(), AxisymmetricVibratingShellProblem< ELEMENT >::global_temporal_error_norm(), VibratingShellProblem< ELEMENT >::global_temporal_error_norm(), RefineableUnsteadyHeatProblem< ELEMENT >::global_temporal_error_norm(), InterfaceProblem< ELEMENT, TIMESTEPPER >::global_temporal_error_norm(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::global_temporal_error_norm(), UnsteadyHeatProblem< ELEMENT >::global_temporal_error_norm(), oomph::DoubleVectorWithHaloEntries::global_value(), oomph::Problem::globally_convergent_line_search(), GluedSolidMesh::glue(), Eigen::internal::gmres(), PoissonElementWithSingularity< BASIC_POISSON_ELEMENT >::grad_singular_function(), oomph::NavierStokesElementWithSingularity< BASIC_NAVIER_STOKES_ELEMENT >::grad_u_bar(), PoissonElementWithSingularity< BASIC_POISSON_ELEMENT >::grad_u_bar(), oomph::SingularNavierStokesSolutionElement< WRAPPED_NAVIER_STOKES_ELEMENT >::grad_u_bar(), SingularPoissonSolutionElement< WRAPPED_POISSON_ELEMENT >::grad_u_bar(), oomph::NavierStokesElementWithSingularity< BASIC_NAVIER_STOKES_ELEMENT >::grad_velocity_singular_function(), oomph::OcTree::gteq_face_neighbour(), oomph::OcTree::gteq_true_edge_neighbour(), oomph::PerturbedSpineNode::h(), Eigen::DynamicSGroup::h_permute(), PoissonProblem< ELEMENT >::half_circle_domain(), PoissonProblem< ELEMENT >::half_circle_domain_with_internal_boundaries(), oomph::HalfRectangleWithHoleDomain::HalfRectangleWithHoleDomain(), oomph::HalfRectangleWithHoleMesh< ELEMENT >::HalfRectangleWithHoleMesh(), oomph::CumulativeTimings::halt(), oomph::Timer::halt(), Membrane::Edge::handleParticleAddition(), Membrane::handleParticleAddition(), MeshTriangle::handleParticleAddition(), Membrane::Edge::handleParticleRemoval(), Membrane::handleParticleRemoval(), MeshTriangle::handleParticleRemoval(), oomph::Node::hang_code(), oomph::Node::hanging_pt(), Global_Parameters::Hankel_first(), oomph::Hankel_functions_for_helmholtz_problem::Hankel_first(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::heap_relax_snode(), oomph::PerturbedSpine::height(), helpers::readFromCommandLine< std::string >(), Eigen::RealQZ< MatrixType_ >::hessenbergTriangular(), MercuryBase::hGridRebuild(), oomph::Hijacked< ELEMENT >::hijack_external_value(), oomph::Hijacked< ELEMENT >::hijack_internal_value(), oomph::Hijacked< ELEMENT >::hijack_nodal_position_value(), oomph::Hijacked< ELEMENT >::hijack_nodal_spine_value(), oomph::Hijacked< ELEMENT >::hijack_nodal_value(), HGridOptimiser::histNumberParticlesPerCell(), HomogenisationProblem< ELEMENT >::HomogenisationProblem(), Eigen::internal::householder_qr_inplace_update(), oomph::HypreInterface::hypre_solve(), oomph::HypreInterface::hypre_solver_setup(), IcoSphere::IcoSphere(), RefineableQAxisymAdvectionDiffusionBoussinesqElement::identify_all_field_data_for_external_interaction(), oomph::ElementWithExternalElement::identify_all_field_data_for_external_interaction(), oomph::RefineableAdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::identify_all_field_data_for_external_interaction(), oomph::FSIWallElement::identify_all_field_data_for_external_interaction(), oomph::ElementWithExternalElement::identify_all_geometric_data_for_external_interaction(), oomph::FSIWallElement::identify_all_geometric_data_for_external_interaction(), oomph::FiniteElement::identify_field_data_for_interactions(), oomph::RefineableElement::identify_field_data_for_interactions(), SegregatedFSICollapsibleChannelProblem< ELEMENT >::identify_fluid_and_solid_dofs(), oomph::FSIAxisymmetricQTaylorHoodElement::identify_load_data(), oomph::AxisymmetricTCrouzeixRaviartElement::identify_load_data(), oomph::AxisymmetricTTaylorHoodElement::identify_load_data(), oomph::GeneralisedNewtonianAxisymmetricTCrouzeixRaviartElement::identify_load_data(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::identify_load_data(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::identify_load_data(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::identify_load_data(), oomph::RefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::identify_load_data(), oomph::QCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::QTaylorHoodElement< 2 >::identify_load_data(), oomph::QTaylorHoodElement< DIM >::identify_load_data(), oomph::RefineableQTaylorHoodElement< DIM >::identify_load_data(), oomph::RefineableQCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::TCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::TTaylorHoodElement< DIM >::identify_load_data(), oomph::QTaylorHoodSpaceTimeElement< DIM >::identify_load_data(), oomph::RefineableQTaylorHoodSpaceTimeElement< DIM >::identify_load_data(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< 2 >::identify_load_data(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::identify_load_data(), oomph::RefineableQTaylorHoodMixedOrderSpaceTimeElement< DIM >::identify_load_data(), oomph::QSphericalCrouzeixRaviartElement::identify_load_data(), oomph::QSphericalTaylorHoodElement::identify_load_data(), oomph::SimpleFSIPreconditioner< MATRIX >::identify_required_blocks(), Eigen::internal::idrs(), Eigen::internal::idrstabl(), ignore_floats(), ignore_ints(), oomph::ImmersedRigidBodyTriangleMeshPolygon::ImmersedRigidBodyTriangleMeshPolygon(), DPMBase::importParticlesAs(), TestPoissonProblem< ELEMENT >::impose_specific_refinement(), Domain::inBoundary(), oomph::GeneralisedElement::include_external_data_fd(), oomph::GeneralisedElement::include_internal_data_fd(), oomph::IsotropicElasticityTensor::independent_component(), oomph::GeneralElasticityTensor::independent_component(), oomph::PMLTimeHarmonicIsotropicElasticityTensor::independent_component(), oomph::DeviatoricIsotropicElasticityTensor::independent_component(), oomph::TimeHarmonicIsotropicElasticityTensor::independent_component(), Eigen::internal::CompressedStorage< Scalar_, StorageIndex_ >::index(), Eigen::internal::index_known_statically(), Eigen::internal::index_pair_first_statically_eq(), Eigen::internal::index_pair_second_statically_eq(), Eigen::internal::index_statically_eq(), Eigen::internal::index_statically_gt(), Eigen::internal::index_statically_lt(), Eigen::internal::index_statically_ne(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::indexColMajor(), oomph::DenseMatrix< T >::indexed_output(), Eigen::internal::IndexMapper< Index, InputDims, NumKernelDims, Layout >::IndexMapper(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::indexRowMajor(), oomph::CRDoubleMatrix::inf_norm(), inflowFromPeriodic::inflowFromPeriodic(), Eigen::internal::coeff_visitor< Derived >::init(), Eigen::KdBVH< Scalar_, Dim_, _Object >::init(), TrackedVisitor< Derived, Vectorizable >::init(), Eigen::TensorIOFormatBase< Derived_ >::init_spacer(), oomph::ImmersedRigidBodyElement::initial_centre_of_mass(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::initial_element_reorder(), oomph::BrethertonSpineMesh< ELEMENT, SpineLineFluidInterfaceElement< ELEMENT > >::initial_element_reorder(), ModalPRefineableQElement< DIM >::initial_setup(), oomph::DoubleMultiVector::initialise(), HGridOptimiser::initialise(), oomph::DenseMatrix< T >::initialise(), oomph::RankThreeTensor< T >::initialise(), oomph::RankFourTensor< T >::initialise(), oomph::RankFiveTensor< T >::initialise(), oomph::Problem::initialise_dt(), oomph::Time::initialise_dt(), oomph::ElementWithExternalElement::initialise_external_element_storage(), HGridOptimiser::initialisePolyFunc(), DPMBase::initialiseSolve(), Eigen::MatrixPower< MatrixType >::initialize(), Eigen::internal::TensorBlockMapper< NumDims, Layout, IndexType >::InitializeBlockDimensions(), Membrane::initializeEdgeBendingQuantities(), initializerListArrayConstruction(), initializerListMatrixConstruction(), Eigen::internal::minmax_coeff_visitor< Derived, is_min, NaNPropagation, isInt >::initpacket(), Eigen::internal::minmax_coeff_visitor< Derived, is_min, NaNPropagation, false >::initpacket(), TrackedVisitor< Derived, Vectorizable >::initpacket(), initSparse(), initSPD(), innervec(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::insert(), oomph::RefineablePolarTaylorHoodElement::insert_load_data(), oomph::RefineablePolarCrouzeixRaviartElement::insert_load_data(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::insertBack(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::insertBackUnordered(), Eigen::SparseMatrix< Scalar_, Options_, StorageIndex_ >::insertByOuterInner(), insertCoefficient(), InsertionBoundary::InsertionBoundary(), InsertionBoundary::insertParticle(), rapidjson::GenericDocument< Encoding, Allocator >::Int(), rapidjson::PrettyWriter< Stream, Encoding, Allocator >::Int(), rapidjson::Writer< Stream, Encoding, Allocator >::Int(), rapidjson::GenericDocument< Encoding, Allocator >::Int64(), HGridOptimiser::intCell2Max(), HGridOptimiser::intCell2Min(), oomph::SurfactantTransportInterfaceElement::integrate_c(), oomph::SpineAxisymmetricMarangoniSurfactantFluidInterfaceElement< ELEMENT >::integrate_c(), oomph::FiniteElement::integrate_fct(), inflowFromPeriodic::integrateBeforeForceComputation(), oomph::SolubleSurfactantTransportInterfaceElement::integrated_C(), ElasticQuarterTubeMesh< ELEMENT >::interface_edge_element_pt(), AxialSpineQuarterTubeMesh< ELEMENT, INTERFACE_ELEMENT >::interface_edge_element_pt(), AxialSolidQuarterTubeMesh< ELEMENT, INTERFACE_ELEMENT >::interface_edge_element_pt(), ElasticQuarterTubeMesh< ELEMENT >::interface_element_pt(), MyCanyonMesh< ELEMENT, INTERFACE_ELEMENT >::interface_element_pt(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::interface_element_pt(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::interface_element_pt(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::interface_element_pt(), MyTipMesh< ELEMENT, INTERFACE_ELEMENT >::interface_element_pt(), AxialSpineQuarterTubeMesh< ELEMENT, INTERFACE_ELEMENT >::interface_element_pt(), AxialSolidQuarterTubeMesh< ELEMENT, INTERFACE_ELEMENT >::interface_element_pt(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::interface_element_pt(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::interface_line_element_pt(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::interface_line_element_pt(), ElasticTwoLayerMesh< ELEMENT >::interface_lower_boundary_element_pt(), oomph::TwoLayerSpineMesh< ELEMENT >::interface_lower_boundary_element_pt(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::interface_min_max(), ElasticTwoLayerMesh< ELEMENT >::interface_upper_boundary_element_pt(), oomph::TwoLayerSpineMesh< ELEMENT >::interface_upper_boundary_element_pt(), InterfaceProblem< ELEMENT, TIMESTEPPER >::InterfaceProblem(), oomph::ElementElementConstraintElement::intern_data_eqn(), oomph::ElementElementConstraintElement::intern_data_pt(), oomph::GeneralisedElement::internal_data_fd(), oomph::GeneralisedElement::internal_data_pt(), oomph::BlockPreconditioner< MATRIX >::internal_dof_block_dimension(), oomph::BlockPreconditioner< MATRIX >::internal_dof_number(), oomph::BlockPreconditioner< MATRIX >::internal_get_block(), oomph::BlockPreconditioner< MATRIX >::internal_get_block_ordered_preconditioner_vector(), oomph::BlockPreconditioner< MATRIX >::internal_get_block_vector(), oomph::BlockPreconditioner< MATRIX >::internal_get_block_vectors(), oomph::GeneralisedElement::internal_local_eqn(), oomph::BlockPreconditioner< MATRIX >::internal_ndof_types(), oomph::TetMeshFacetedClosedSurface::internal_point_for_tetgen(), oomph::BlockPreconditioner< MATRIX >::internal_return_block_ordered_preconditioner_vector(), oomph::BlockPreconditioner< MATRIX >::internal_return_block_vector(), oomph::BlockPreconditioner< MATRIX >::internal_return_block_vectors(), oomph::BlockPreconditioner< CRDoubleMatrix >::internal_return_block_vectors(), Eigen::SplineFitting< SplineType >::Interpolate(), DistanceWrapper< ELEMENT >::interpolate_distance_to_ext_element_to_nodes(), PSDContinuous::interpolateCSD(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::interpolated_c_adv_diff_react(), oomph::AxisymmetricLinearElasticityEquationsBase::interpolated_d2u_dt2_axisymmetric_linear_elasticity(), oomph::AxisymmetricNavierStokesEquations::interpolated_d_dudx_dX_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::interpolated_d_dudx_dX_axi_nst(), oomph::AxisymmetricPoroelasticityEquations::interpolated_div_du_dt(), oomph::AxisymmetricPoroelasticityEquations::interpolated_div_u(), oomph::AxisymmetricPoroelasticityEquations::interpolated_du_dt(), oomph::AxisymmetricLinearElasticityEquationsBase::interpolated_du_dt_axisymmetric_linear_elasticity(), oomph::SpaceTimeNavierStokesEquations< DIM >::interpolated_du_dt_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::interpolated_du_dt_nst(), oomph::AxisymmetricNavierStokesEquations::interpolated_duds_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::interpolated_duds_axi_nst(), oomph::AxisymmetricNavierStokesEquations::interpolated_dudt_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::interpolated_dudt_axi_nst(), oomph::PolarStreamfunctionEquations::interpolated_dudx(), oomph::AxisymmetricNavierStokesEquations::interpolated_dudx_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::interpolated_dudx_axi_nst(), oomph::NavierStokesEquations< DIM >::interpolated_dudx_nst(), oomph::PolarNavierStokesEquations::interpolated_dudx_pnst(), oomph::SphericalNavierStokesEquations::interpolated_dudx_spherical_nst(), oomph::FiniteElement::interpolated_dxdt(), oomph::FaceElement::interpolated_dxdt(), oomph::SolidFiniteElement::interpolated_dxids(), SSPorousChannelEquations::interpolated_f(), oomph::PerturbedSpineLinearisedAxisymmetricFluidInterfaceElement< ELEMENT >::interpolated_H(), oomph::LinearisedAxisymmetricNavierStokesEquations::interpolated_nodal_position_perturbation_lin_axi_nst(), OrrSommerfeldEquations< DIM >::interpolated_p(), oomph::LinearisedAxisymmetricNavierStokesEquations::interpolated_p_lin_axi_nst(), oomph::LinearisedAxisymmetricNavierStokesEquations::interpolated_p_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::interpolated_p_linearised_nst(), oomph::AxisymmetricPoroelasticityEquations::interpolated_q(), oomph::DarcyEquations< DIM >::interpolated_q(), oomph::PoroelasticityEquations< DIM >::interpolated_q(), oomph::DummyBrickElement::interpolated_s_tet(), oomph::LinearisedAxisymmetricFluidInterfaceElement::interpolated_u(), oomph::FluidInterfaceElement::interpolated_u(), OrrSommerfeldEquations< DIM >::interpolated_u(), oomph::AxisymmetricPoroelasticityEquations::interpolated_u(), oomph::PoroelasticityEquations< DIM >::interpolated_u(), oomph::DGFaceElement::interpolated_u(), oomph::AxisymmetricNavierStokesEquations::interpolated_u_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::interpolated_u_axi_nst(), oomph::AxisymmetricLinearElasticityEquationsBase::interpolated_u_axisymmetric_linear_elasticity(), oomph::FluxTransportEquations< DIM >::interpolated_u_flux_transport(), oomph::LinearisedAxisymmetricNavierStokesEquations::interpolated_u_lin_axi_nst(), oomph::LinearSurfaceContactElement< ELEMENT >::interpolated_u_linear_elasticity(), oomph::HomogenisedLinearElasticityEquationsBase::interpolated_u_linear_elasticity(), oomph::LinearElasticityEquationsBase< DIM >::interpolated_u_linear_elasticity(), oomph::LinearisedAxisymmetricNavierStokesEquations::interpolated_u_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::interpolated_u_linearised_nst(), oomph::MultiPoissonEquations< DIM, NFIELDS >::interpolated_u_multi_poisson(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::interpolated_u_nst(), oomph::NavierStokesEquations< DIM >::interpolated_u_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::interpolated_u_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::interpolated_u_nst(), oomph::PolarNavierStokesEquations::interpolated_u_pnst(), PoissonElementWithSingularity< BASIC_POISSON_ELEMENT >::interpolated_u_poisson(), oomph::SphericalNavierStokesEquations::interpolated_u_spherical_nst(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::interpolated_u_time_harmonic_fourier_decomposed_linear_elasticity(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::interpolated_u_time_harmonic_linear_elasticity(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::interpolated_u_time_harmonic_linear_elasticity(), oomph::PolarStreamfunctionEquations::interpolated_velocity(), oomph::FiniteElement::interpolated_x(), oomph::FaceElement::interpolated_x(), oomph::SolidFiniteElement::interpolated_xi(), oomph::SolidFaceElement::interpolated_xi(), oomph::FiniteElement::interpolated_zeta(), Eigen::SplineFitting< SplineType >::InterpolateWithDerivatives(), inverse_general_4x4(), inverse_permutation_4x4(), Eigen::IOFormat::IOFormat(), oomph::Data::is_constrained(), oomph::Node::is_hanging(), is_number_of_subsets_feasible(), oomph::Data::is_pinned(), oomph::UnstructuredTwoDMeshGeometryBase::is_point_inside_polygon_helper(), oomph::Data::is_segregated_solve_pinned(), Eigen::MatrixBase< Derived >::isDiagonal(), isEqual(), Eigen::DynamicSGroup::GroupElement::isId(), Eigen::MatrixBase< Derived >::isIdentity(), Eigen::MatrixBase< Derived >::isLowerTriangular(), CGCoordinates::R::isResolvedIn(), CGCoordinates::RZ::isResolvedIn(), CGCoordinates::X::isResolvedIn(), CGCoordinates::XY::isResolvedIn(), CGCoordinates::XZ::isResolvedIn(), CGCoordinates::Y::isResolvedIn(), CGCoordinates::YZ::isResolvedIn(), CGCoordinates::Z::isResolvedIn(), Eigen::MatrixBase< Derived >::isUnitary(), Eigen::MatrixBase< Derived >::isUpperTriangular(), Eigen::DenseBase< Derived >::isZero(), oomph::FiniteElement::J_eulerian(), oomph::FaceElement::J_eulerian(), oomph::FiniteElement::J_eulerian_at_knot(), oomph::FaceElement::J_eulerian_at_knot(), oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >::jacobian_and_shape_of_field(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::jacobian_and_shape_of_field(), Eigen::internal::trsmKernelL< Scalar, Index, Mode, Conjugate, TriStorageOrder, OtherInnerStride, Specialized >::kernel(), Eigen::internal::trsmKernelR< Scalar, Index, Mode, Conjugate, TriStorageOrder, OtherInnerStride, Specialized >::kernel(), oomph::AxisymmetricNavierStokesEquations::kin_energy(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::kin_energy(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::kin_energy(), oomph::NavierStokesEquations< DIM >::kin_energy(), oomph::PolarNavierStokesEquations::kin_energy(), oomph::SpaceTimeNavierStokesEquations< DIM >::kin_energy(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::kin_energy(), oomph::SphericalNavierStokesEquations::kin_energy(), Eigen::internal::TensorBlockDescriptor< NumDims, IndexType >::DestinationBuffer::kind(), oomph::PerturbedSpineLinearisedAxisymmetricFluidInterfaceElement< ELEMENT >::kinematic_local_eqn(), Eigen::internal::KLoop(), oomph::PiecewiseGauss< DIM, NPTS_1D >::knot(), MyIntegral::knot(), oomph::Gauss< 1, 2 >::knot(), oomph::Gauss< 1, 3 >::knot(), oomph::Gauss< 1, 4 >::knot(), oomph::Gauss< 2, 2 >::knot(), oomph::Gauss< 2, 3 >::knot(), oomph::Gauss< 2, 4 >::knot(), oomph::Gauss< 3, 2 >::knot(), oomph::Gauss< 3, 3 >::knot(), oomph::Gauss< 3, 4 >::knot(), oomph::Gauss_Rescaled< DIM, NPTS_1D >::knot(), oomph::TGauss< 1, 2 >::knot(), oomph::TGauss< 1, 3 >::knot(), oomph::TGauss< 1, 4 >::knot(), oomph::TGauss< 1, 5 >::knot(), oomph::TGauss< 2, 2 >::knot(), oomph::TGauss< 2, 3 >::knot(), oomph::TGauss< 2, 4 >::knot(), oomph::TGauss< 2, 13 >::knot(), oomph::TGauss< 2, 9 >::knot(), oomph::TGauss< 2, 16 >::knot(), oomph::TGauss< 2, 5 >::knot(), oomph::TGauss< 3, 2 >::knot(), oomph::TGauss< 3, 3 >::knot(), oomph::TGauss< 3, 5 >::knot(), oomph::GaussLobattoLegendre< 1, NPTS_1D >::knot(), oomph::GaussLobattoLegendre< 2, NPTS_1D >::knot(), oomph::GaussLobattoLegendre< 3, NPTS_1D >::knot(), oomph::GaussLegendre< 1, NPTS_1D >::knot(), oomph::GaussLegendre< 2, NPTS_1D >::knot(), oomph::GaussLegendre< 3, NPTS_1D >::knot(), Eigen::KnotAveragingWithDerivatives(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::l2_norm_of_height(), oomph::SolubleSurfactantTransportInterfaceElement::l2_norm_of_height(), oomph::ConstraintElement::lagrange_eqn(), oomph::PseudoElasticPreconditioner::lagrange_multiplier_preconditioner_solve(), oomph::PseudoElasticPreconditionerOld::lagrange_multiplier_preconditioner_solve(), oomph::AxisymmetricPoroelasticityTractionElement< ELEMENT >::lagrangian_eulerian_translation_factor(), oomph::SolidNode::lagrangian_position(), oomph::SolidFiniteElement::lagrangian_position(), oomph::SolidNode::lagrangian_position_gen(), oomph::SolidFiniteElement::lagrangian_position_gen(), lapackNorm(), latest_fixed_point_iteration_guess_for_strain_rate(), LawinenBox::LawinenBox(), Eigen::internal::least_square_conjugate_gradient(), oomph::ChannelSpineMesh< ELEMENT >::left_element_pt(), oomph::ChannelSpineMesh< ELEMENT >::left_spine_pt(), oomph::HelperForSortingVectorOfPairsOfVertexPtAndDouble::less_than_based_on_double(), TwoDDGProblem< ELEMENT >::limit(), oomph::MinModLimiter::limit(), oomph::FullCircleDomain::lin_interpolate(), oomph::TubeDomain::lin_interpolate(), oomph::BlackBoxFDNewtonSolver::line_search(), oomph::CylinderWithFlagDomain::linear_interpolate(), oomph::RectangleWithHoleAndAnnularRegionDomain::linear_interpolate(), CylinderAndInterfaceDomain::linear_interpolate(), RectangleWithHoleDomain::linear_interpolate(), oomph::HalfRectangleWithHoleDomain::linear_interpolate(), oomph::RectangleWithHoleDomain::linear_interpolate(), oomph::LinearElasticityTractionElement< ELEMENT >::LinearElasticityTractionElement(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::LinearisedAxisymmetricQCrouzeixRaviartElement(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::LinearisedAxisymPoroelasticBJS_FSIElement(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::LinearisedFSIAxisymmetricNStNoSlipBCElementElement(), oomph::LinearisedQCrouzeixRaviartElement::LinearisedQCrouzeixRaviartElement(), oomph::LinearSurfaceContactElement< ELEMENT >::LinearSurfaceContactElement(), LinearWaveProblem< ELEMENT, TIMESTEPPER >::LinearWaveProblem(), lines(), Eigen::internal::llt_rank_update_lower(), Eigen::internal::lmpar(), Eigen::internal::lmpar2(), Eigen::internal::lmqrsolv(), load(), Global_Physical_Variables::load(), Eigen::internal::BlasVectorMapper< Scalar, Index >::load(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType >::load(), Eigen::internal::TensorContractionSubMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::load(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::load(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::load(), oomph::KirchhoffLoveShellEquations::load_rate_of_work(), oomph::FSIHermiteBeamElement::load_vector(), oomph::FSIDiagHermiteShellElement::load_vector(), LoadClumps(), LoadConf(), Membrane::loadFromSTL(), LoadIProfiles(), loadLhsPacket(), Eigen::loadMarket(), LoadMass(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType >::loadPacket(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType, Incr >::loadPacket(), Eigen::internal::TensorContractionSubMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::loadPacket(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::loadPacket(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::loadPacket(), Eigen::internal::BaseTensorContractionMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::loadPacket(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::loadPacketPartial(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::loadPacketPartial(), Eigen::internal::TensorContractionSubMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::loadPacketPartial(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType >::loadPacketPartial(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType, Incr >::loadPacketPartial(), LoadPD(), LoadPebbles(), ChuteWithPeriodicInflow::loadPeriodicBox(), Eigen::internal::loadQuadToDoublePacket(), Eigen::internal::loadRhsBfloat16(), SolidProblem< ELEMENT_TYPE >::loadSolidMesh(), LoadTOI(), Eigen::internal::loadTwoRhsFloat32(), Membrane::loadVertexPositions(), oomph::QHermiteElement< DIM >::local_coord_is_valid(), oomph::QElementBase::local_coord_is_valid(), oomph::TElementBase::local_coord_is_valid(), oomph::QHermiteElement< DIM >::local_coordinate_of_node(), oomph::FiniteElement::local_fraction_of_node(), oomph::QHermiteElement< DIM >::local_fraction_of_node(), oomph::RefineableElement::local_hang_eqn(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::local_one_d_fraction_of_interpolating_node(), oomph::RefineableAxisymmetricQTaylorHoodElement::local_one_d_fraction_of_interpolating_node(), oomph::RefineableGeneralisedNewtonianAxisymmetricQTaylorHoodElement::local_one_d_fraction_of_interpolating_node(), oomph::RefineableLinearisedQTaylorHoodElement::local_one_d_fraction_of_interpolating_node(), oomph::RefineableQSphericalTaylorHoodElement::local_one_d_fraction_of_interpolating_node(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::local_one_d_fraction_of_interpolating_node(), oomph::RefineablePseudoSolidNodeUpdateElement< BASIC, SOLID >::local_one_d_fraction_of_interpolating_node(), oomph::RefineableElement::local_one_d_fraction_of_interpolating_node(), oomph::RefineableQTaylorHoodElement< DIM >::local_one_d_fraction_of_interpolating_node(), oomph::RefineablePolarTaylorHoodElement::local_one_d_fraction_of_interpolating_node(), oomph::RefineableQPVDElementWithContinuousPressure< DIM >::local_one_d_fraction_of_interpolating_node(), oomph::RefineableQTaylorHoodSpaceTimeElement< DIM >::local_one_d_fraction_of_interpolating_node(), oomph::RefineableQTaylorHoodMixedOrderSpaceTimeElement< DIM >::local_one_d_fraction_of_interpolating_node(), oomph::AssemblyHandler::local_problem_dof(), oomph::FiniteElement::local_to_eulerian_mapping_diagonal(), oomph::RefineableElement::local_to_eulerian_mapping_diagonal(), oomph::SolidFiniteElement::local_to_lagrangian_mapping_diagonal(), oomph::RefineableSolidElement::local_to_lagrangian_mapping_diagonal(), oomph::FiniteElement::locate_zeta(), RefineableBin::locate_zeta(), RefineableBinArray::locate_zeta(), NonRefineableBinArray::locate_zeta(), oomph::Multi_domain_functions::locate_zeta_for_local_coordinates(), helpers::lookAhead(), oomph::TwoLayerPerturbedSpineMesh< ELEMENT >::lower_layer_element_pt(), ElasticTwoLayerMesh< ELEMENT >::lower_layer_element_pt(), oomph::TwoLayerSpineMesh< ELEMENT >::lower_layer_element_pt(), oomph::DenseComplexMatrix::lubksub(), oomph::CRComplexMatrix::lubksub(), oomph::CCComplexMatrix::lubksub(), oomph::DenseComplexMatrix::ludecompose(), oomph::CRComplexMatrix::ludecompose(), oomph::CCComplexMatrix::ludecompose(), oomph::ChannelWithLeafletDomain::macro_bound_I_E(), oomph::ChannelWithLeafletDomain::macro_bound_I_N(), oomph::ChannelWithLeafletDomain::macro_bound_I_S(), oomph::ChannelWithLeafletDomain::macro_bound_I_W(), oomph::ChannelWithLeafletDomain::macro_bound_II_E(), oomph::ChannelWithLeafletDomain::macro_bound_II_N(), oomph::ChannelWithLeafletDomain::macro_bound_II_S(), oomph::ChannelWithLeafletDomain::macro_bound_II_W(), oomph::ChannelWithLeafletDomain::macro_bound_III_E(), oomph::ChannelWithLeafletDomain::macro_bound_III_N(), oomph::ChannelWithLeafletDomain::macro_bound_III_S(), oomph::ChannelWithLeafletDomain::macro_bound_III_W(), oomph::ChannelWithLeafletDomain::macro_bound_IV_E(), oomph::ChannelWithLeafletDomain::macro_bound_IV_N(), oomph::ChannelWithLeafletDomain::macro_bound_IV_S(), oomph::ChannelWithLeafletDomain::macro_bound_IV_W(), oomph::TubeDomain::macro_element_boundary(), oomph::ChannelWithLeafletDomain::macro_element_boundary(), oomph::ExtrudedDomain::macro_element_boundary(), oomph::Domain::macro_element_pt(), oomph::ExtrudedDomain::macro_element_pt(), oomph::QMacroElement< 2 >::macro_map(), oomph::QExtrudedMacroElement< 3 >::macro_map(), oomph::QMacroElement< 3 >::macro_map(), oomph::MacroElementNodeUpdateChannelWithLeafletMesh< ELEMENT >::MacroElementNodeUpdateChannelWithLeafletMesh(), oomph::MacroElementNodeUpdateCollapsibleChannelMesh< ELEMENT >::MacroElementNodeUpdateCollapsibleChannelMesh(), oomph::MacroElementNodeUpdateRefineableFishMesh< ELEMENT >::MacroElementNodeUpdateRefineableFishMesh(), main(), Eigen::internal::make_block_householder_triangular_factor(), make_first_subset(), make_reverse_iterator(), Eigen::internal::kiss_cpx_fft< Scalar_ >::make_twiddles(), BaseCluster::makeDataAnalysis(), BaseCluster::makeGnuplotFile(), map_class_matrix(), map_class_vector(), Map_MatrixXd_get_coeff(), Map_MatrixXd_set_coeff(), Eigen::internal::IndexMapper< Index, InputDims, NumKernelDims, Layout >::mapGpuInputKernelToTensorInputOffset(), Eigen::internal::IndexMapper< Index, InputDims, NumKernelDims, Layout >::mapGpuOutputKernelToTensorOutputOffset(), oomph::HangInfo::master_node_pt(), oomph::HangInfo::master_weight(), Eigen::internal::TensorMaterializedBlock< Scalar, NumDims, Layout, IndexType >::materialize(), Eigen::internal::matrix_exp_compute(), c_interface_base< real >::matrix_from_stl(), Eigen::internal::matrix_function_compute_above_diagonal(), Eigen::internal::matrix_function_compute_block_atomic(), Eigen::internal::matrix_function_compute_block_start(), Eigen::internal::matrix_function_compute_map(), Eigen::internal::matrix_function_compute_permutation(), Eigen::internal::matrix_function_find_cluster(), Eigen::internal::matrix_function_partition_eigenvalues(), Eigen::internal::matrix_function_permute_schur(), Eigen::internal::matrix_function_solve_triangular_sylvester(), oomph::CCDoubleMatrix::matrix_reduction(), oomph::CRDoubleMatrix::matrix_reduction(), oomph::DenseDoubleMatrix::matrix_reduction(), Eigen::internal::matrix_sqrt_quasi_triangular_1x1_off_diagonal_block(), Eigen::internal::matrix_sqrt_quasi_triangular_1x2_off_diagonal_block(), Eigen::internal::matrix_sqrt_quasi_triangular_2x1_off_diagonal_block(), Eigen::internal::matrix_sqrt_quasi_triangular_2x2_diagonal_block(), Eigen::internal::matrix_sqrt_quasi_triangular_2x2_off_diagonal_block(), Eigen::internal::matrix_sqrt_quasi_triangular_diagonal(), Eigen::internal::matrix_sqrt_quasi_triangular_off_diagonal(), Eigen::matrix_sqrt_triangular(), c_interface_base< real >::matrix_to_stl(), matrixRedux(), matrixVisitor(), MatrixXd_get_coeff(), MatrixXd_set_coeff(), oomph::DoubleVector::max(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::max_and_min_invariant_and_viscosity(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::max_and_min_invariant_and_viscosity(), oomph::TriangleMeshCurve::max_boundary_id(), oomph::ComplexMatrixBase::max_residual(), oomph::HelmholtzMGPreconditioner< DIM >::maximum_edge_width(), Eigen::MaxSizeVector< T >::MaxSizeVector(), Eigen::ThreadPoolTempl< Environment >::MaybeGetTask(), measure_clock_speed(), oomph::MeshHelper::merge_spine_meshes(), oomph::BlockPreconditioner< MATRIX >::mesh_pt(), oomph::MGSolver< DIM >::mg_solve(), oomph::HelmholtzMGPreconditioner< DIM >::mg_solve(), SamplePointContainer::min_and_max_coordinates(), NonRefineableBinArray::min_distance(), Eigen::LevenbergMarquardt< FunctorType_ >::minimizeOptimumStorageOneStep(), Eigen::internal::minimum_degree_ordering(), oomph::MinModLimiter::minmod(), Eigen::internal::gemm_class< Scalar, is_unit_inc >::mloop(), DenseLM< Scalar >::model(), sparseGaussianTest< Scalar >::model(), oomph::MGSolver< DIM >::modify_restriction_matrices(), SubcriticalMaserBoundaryTEST::modifyGhostAfterCreation(), SubcriticalMaserBoundaryTEST::modifyPeriodicComplexity(), helpers::more(), MortaringValidationProblem< ELEMENT, NON_MORTAR_ELEMENT >::MortaringValidationProblem(), Eigen::internal::move_construct_elements_of_array(), oomph::QHermiteElement< DIM >::move_local_coord_back_into_element(), oomph::QElementBase::move_local_coord_back_into_element(), oomph::TElementBase::move_local_coord_back_into_element(), TriangleMeshWall::moveVerticesToMatchVolume(), DPMBase::mpiIsInCommunicationZone(), CRBond_Bessel::msta1(), CRBond_Bessel::msta2(), Eigen::DynamicSGroup::mul(), oomph::OcTree::mult_mat_mat(), oomph::OcTree::mult_mat_vect(), oomph::CRDoubleMatrix::multiply(), oomph::DenseDoubleMatrix::multiply(), oomph::CCDoubleMatrix::multiply(), oomph::DenseComplexMatrix::multiply(), oomph::CRComplexMatrix::multiply(), oomph::CCComplexMatrix::multiply(), oomph::CRDoubleMatrix::multiply_transpose(), oomph::DenseDoubleMatrix::multiply_transpose(), oomph::CCDoubleMatrix::multiply_transpose(), oomph::DenseComplexMatrix::multiply_transpose(), oomph::CRComplexMatrix::multiply_transpose(), oomph::CCComplexMatrix::multiply_transpose(), MultiPoissonProblem< ELEMENT >::MultiPoissonProblem(), multVecVSX(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvAddMv(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvRandom(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvScale(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvTimesMatAddMv(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::MvTransMv(), oomph::StreamfunctionProblem::my_output(), MyMacroElementNodeUpdateFishMesh< ELEMENT >::MyMacroElementNodeUpdateFishMesh(), MyMacroElementNodeUpdateRefineableFishMesh< ELEMENT >::MyMacroElementNodeUpdateRefineableFishMesh(), NavierStokesProblem< ELEMENT >::NavierStokesProblem(), NonRefineableBinArray::nbin(), oomph::FaceElement::nbulk_value_resize(), oomph::Mesh::ndof_types(), oomph::BlockPreconditioner< MATRIX >::ndof_types_in_mesh(), oomph::DGFaceElement::neighbour_face_pt(), oomph::Problem::newton_solve(), next_subset(), oomph::BlockPreconditioner< MATRIX >::nfine_grain_dof_types_in(), No_Slip::no_slip_condition_first(), No_Slip::no_slip_condition_second(), oomph::Mesh::nodal_dimension(), oomph::AxisymFoepplvonKarmanEquations::nodal_index_fvk(), oomph::DisplacementBasedFoepplvonKarmanEquations::nodal_index_fvk(), oomph::FoepplvonKarmanEquations::nodal_index_fvk(), oomph::FiniteElement::nodal_local_eqn(), oomph::FiniteElement::nodal_position(), oomph::FiniteElement::nodal_position_gen(), oomph::FiniteElement::nodal_value(), oomph::NodeElementSolidOnlyMortaringElement::node_and_vector_to_data_pt(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::node_created_by_neighbour(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::node_created_by_neighbour(), oomph::RefineableQElement< 3 >::node_created_by_neighbour(), oomph::RefineableQElement< 2 >::node_created_by_neighbour(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::node_created_by_son_of_neighbour(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::node_created_by_son_of_neighbour(), oomph::ElementElementConstraintElement::node_eqn(), NodeReordering::node_global_position_comparison(), oomph::ElementElementConstraintElement::node_pt(), oomph::NodeNodeConstraintElement::node_pt(), oomph::AlgebraicMesh::node_update(), oomph::Mesh::node_update(), oomph::MacroElementNodeUpdateNode::node_update(), Eigen::ThreadPoolTempl< Environment >::NonEmptyQueueIndex(), oomph::DoubleVector::norm(), oomph::DoubleMultiVector::norm(), CGCoordinates::Base_X_Y_Z::normalisePolynomialCoefficients(), CGCoordinates::Base_XY_XZ_YZ::normalisePolynomialCoefficients(), CGCoordinates::R::normalisePolynomialCoefficients(), CGCoordinates::XYZ::normalisePolynomialCoefficients(), oomph::VorticityRecoveryHelpers::RecoveryHelper::npartial_derivative(), oomph::QElement< 1, NNODE_1D >::nplot_points(), oomph::QElement< 2, NNODE_1D >::nplot_points(), oomph::QElement< 3, NNODE_1D >::nplot_points(), oomph::QSpectralElement< 1, NNODE_1D >::nplot_points(), oomph::QSpectralElement< 2, NNODE_1D >::nplot_points(), oomph::QSpectralElement< 3, NNODE_1D >::nplot_points(), oomph::TElement< 2, NNODE_1D >::nplot_points(), oomph::TElement< 3, NNODE_1D >::nplot_points(), oomph::TElement< 2, NNODE_1D >::nplot_points_paraview(), oomph::TElement< 3, NNODE_1D >::nplot_points_paraview(), oomph::UnstructuredTwoDMeshGeometryBase::nregion_element(), oomph::TetMeshBase::nregion_element(), oomph::TElement< 2, NNODE_1D >::nsub_elements_paraview(), nullary_overflow(), num_elem(), oomph::DGEulerFaceElement< ELEMENT >::numerical_flux(), oomph::DGFaceElement::numerical_flux_at_knot(), Eigen::internal::TensorBlockIO< Scalar, IndexType, NumDims, Layout >::NumSqueezableInnerDims(), oomph::VorticitySmootherElement< ELEMENT >::nvelocity_derivatives_to_recover(), oomph::TriangleMeshOpenCurve::nvertices(), oomph::VorticitySmootherElement< ELEMENT >::nvorticity_derivatives_to_recover(), oomph::OcTreeForest::oc_edge_neigh_pt(), oomph::OcTreeForest::oc_face_neigh_pt(), oomph::RefineableQElement< 3 >::oc_hang_helper(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::oc_hang_helper(), oomph::OcTreeForest::octree_pt(), oomph::RankFourTensor< T >::offset(), oomph::DShape::offset(), oomph::RankFiveTensor< T >::offset(), BaseParticle::oldRead(), oomph::OneDimensionalLegendreDShape< NNODE_1D >::OneDimensionalLegendreDShape(), oomph::OneDimensionalLegendreShape< NNODE_1D >::OneDimensionalLegendreShape(), oomph::OneDimensionalModalDShape::OneDimensionalModalDShape(), oomph::OneDimensionalModalShape::OneDimensionalModalShape(), oomph::OneDLegendreDShapeParam::OneDLegendreDShapeParam(), oomph::OneDLegendreShapeParam::OneDLegendreShapeParam(), OneDPoissonProblem< ELEMENT >::OneDPoissonProblem(), oomph::OomphLibException::OomphLibException(), oomph::OcTreeForest::open_hanging_node_files(), oomph::QuadTreeForest::open_hanging_node_files(), Eigen::internal::dhs_pack< bfloat16, DataMapper, Packet8bf, StorageOrder, PanelMode, true >::operator()(), Eigen::internal::dhs_pack< bfloat16, DataMapper, Packet8bf, StorageOrder, PanelMode, false >::operator()(), Eigen::TensorSycl::internal::GeneralScalarContraction< OutScalar, LhsScalar, RhsScalar, OutAccessor, LhsMapper, RhsMapper, StorageIndex, Vectorizable >::operator()(), Eigen::TensorSycl::internal::SecondStepPartialReduction< OutScalar, Index, InputAccessor, OutputAccessor, OpType >::operator()(), Eigen::TensorSycl::internal::ScanKernelFunctor< Evaluator, CoeffReturnType, OutAccessor, Op, Index, stp >::operator()(), Eigen::TensorSycl::internal::ScanAdjustmentKernelFunctor< CoeffReturnType, InAccessor, OutAccessor, Op, Index >::operator()(), Eigen::EigenConvolutionKernel< Evaluator, CoeffReturnType, KernelType, Index, InputDims, Kernel_accessor, Buffer_accessor, convolution_type::CONV1D >::operator()(), Eigen::EigenConvolutionKernel< Evaluator, CoeffReturnType, KernelType, Index, InputDims, Kernel_accessor, Buffer_accessor, convolution_type::CONV2D >::operator()(), Eigen::EigenConvolutionKernel< Evaluator, CoeffReturnType, KernelType, Index, InputDims, Kernel_accessor, Buffer_accessor, convolution_type::CONV3D >::operator()(), Eigen::internal::GaussianGenerator< T, Index, NumDims >::operator()(), SimpleTensorGenerator< T, NumDims >::operator()(), SimpleTensorGenerator< bool, NumDims >::operator()(), DummyGenerator< T, NumDims >::operator()(), Eigen::internal::gebp_kernel< LhsScalar, RhsScalar, Index, DataMapper, mr, nr, ConjugateLhs, ConjugateRhs >::operator()(), Eigen::internal::lhs_process_one_packet< nr, LhsProgress, RhsProgress, LhsScalar, RhsScalar, ResScalar, AccPacket, LhsPacket, RhsPacket, ResPacket, GEBPTraits, LinearMapper, DataMapper >::operator()(), Eigen::internal::last_row_process_16_packets< LhsScalar, RhsScalar, Index, DataMapper, mr, nr, ConjugateLhs, ConjugateRhs, SwappedLhsProgress >::operator()(), Eigen::internal::last_row_process_16_packets< LhsScalar, RhsScalar, Index, DataMapper, mr, nr, ConjugateLhs, ConjugateRhs, 16 >::operator()(), Eigen::AutoDiffJacobian< Functor >::operator()(), SqrtOutputKernel::operator()(), Eigen::NoOpOutputKernel::operator()(), oomph::MapMatrixMixed< KEY_TYPE_ROW, KEY_TYPE_COL, VALUE_TYPE >::operator()(), Eigen::COLAMDOrdering< StorageIndex >::operator()(), Eigen::internal::nullary_wrapper< Scalar, NullaryOp, has_nullary, has_unary, has_binary >::operator()(), Eigen::internal::nullary_wrapper< Scalar, NullaryOp, false, true, false >::operator()(), Eigen::internal::nullary_wrapper< Scalar, NullaryOp, false, false, true >::operator()(), Eigen::internal::get_boxes_helper< ObjectList, VolumeList, int >::operator()(), Eigen::internal::minmax_coeff_visitor< Derived, is_min, NaNPropagation, isInt >::operator()(), Eigen::internal::minmax_coeff_visitor< Derived, is_min, NaNPropagation, false >::operator()(), oomph::Shape::operator()(), oomph::ElasticityTensor::operator()(), oomph::PMLTimeHarmonicElasticityTensor::operator()(), oomph::TimeHarmonicElasticityTensor::operator()(), oomph::DShape::operator()(), oomph::DenseComplexMatrix::operator()(), oomph::CRComplexMatrix::operator()(), oomph::CCComplexMatrix::operator()(), oomph::Matrix< T, MATRIX_TYPE >::operator()(), oomph::CRDoubleMatrix::operator()(), oomph::DenseDoubleMatrix::operator()(), oomph::CCDoubleMatrix::operator()(), oomph::SumOfMatrices::operator()(), oomph::RankThreeTensor< T >::operator()(), oomph::RankFourTensor< T >::operator()(), oomph::RankFiveTensor< T >::operator()(), DenseLM< Scalar >::operator()(), sparseGaussianTest< Scalar >::operator()(), chwirut2_functor::operator()(), misra1a_functor::operator()(), hahn1_functor::operator()(), misra1d_functor::operator()(), lanczos1_functor::operator()(), rat42_functor::operator()(), MGH10_functor::operator()(), BoxBOD_functor::operator()(), MGH17_functor::operator()(), MGH09_functor::operator()(), Bennett5_functor::operator()(), thurber_functor::operator()(), rat43_functor::operator()(), eckerle4_functor::operator()(), lmstr_functor::operator()(), lmder_functor::operator()(), lmdif_functor::operator()(), my_functor::operator()(), Eigen::internal::dhs_pack< double, DataMapper, Packet2d, StorageOrder, PanelMode, true >::operator()(), Eigen::internal::dhs_pack< double, DataMapper, Packet2d, StorageOrder, PanelMode, false >::operator()(), CompareElementCoordinate< ELEMENT >::operator()(), Eigen::AutoDiffVector< ValueType, JacobianType >::operator()(), Eigen::TranspositionsBase< Derived >::operator()(), Eigen::internal::BlasVectorMapper< Scalar, Index >::operator()(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType >::operator()(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType, Incr >::operator()(), Eigen::internal::TensorContractionSubMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::operator()(), Eigen::internal::UniformRandomGenerator< T >::operator()(), Eigen::internal::NormalRandomGenerator< T >::operator()(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::operator()(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::operator()(), Eigen::internal::non_integral_type_placement_new< Device, CoeffReturnType >::operator()(), Eigen::internal::linspaced_op_impl< Scalar, false >::operator()(), Eigen::internal::linspaced_op_impl< Scalar, true >::operator()(), Eigen::internal::linspaced_op< Scalar >::operator()(), Eigen::internal::equalspaced_op< Scalar >::operator()(), Eigen::internal::sparse_reserve_op< StorageIndex >::operator()(), compile_time_device_info::operator()(), oomph::DoubleMultiVector::operator()(), CompareNodes::operator()(), Eigen::internal::tribb_kernel< LhsScalar, RhsScalar, Index, mr, nr, ConjLhs, ConjRhs, ResInnerStride, UpLo >::operator()(), Eigen::internal::dhs_pack< Scalar, DataMapper, Packet, StorageOrder, PanelMode, UseLhs >::operator()(), Eigen::internal::gemm_pack_lhs< Scalar, Index, DataMapper, Pack1, Pack2, Packet, ColMajor, Conjugate, PanelMode >::operator()(), Eigen::internal::gemm_pack_lhs< Scalar, Index, DataMapper, Pack1, Pack2, Packet, RowMajor, Conjugate, PanelMode >::operator()(), Eigen::internal::symm_pack_lhs< Scalar, Index, Pack1, Pack2_dummy, StorageOrder >::operator()(), TrackedVisitor< Derived, Vectorizable >::operator()(), Eigen::internal::ScanLauncher< Self, Reducer, Eigen::SyclDevice, vectorize >::operator()(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::operator()(), oomph::LinearElasticitySmoothMesh< LINEAR_ELASTICITY_ELEMENT >::operator()(), oomph::PoissonSmoothMesh< POISSON_ELEMENT >::operator()(), Eigen::internal::dhs_cpack< double, DataMapper, Packet, PacketC, StorageOrder, Conjugate, PanelMode, true >::operator()(), Eigen::internal::dhs_cpack< double, DataMapper, Packet, PacketC, StorageOrder, Conjugate, PanelMode, false >::operator()(), Eigen::internal::dhs_cpack< Scalar, DataMapper, Packet, PacketC, StorageOrder, Conjugate, PanelMode, UseLhs >::operator()(), NumericalVector< T >::operator*(), SmallMatrix< numberOfRows, numberOfColumns >::operator*(), CGFields::StandardFields::operator*(), oomph::DoubleVector::operator*=(), oomph::DoubleMultiVector::operator*=(), Eigen::SparseMatrixBase< Derived >::operator*=(), NumericalVector< T >::operator+(), Eigen::InnerIterator< XprType >::operator+(), Eigen::SparseCompressedBase< Derived >::InnerIterator::operator+(), oomph::DoubleVector::operator+=(), NumericalVector< T >::operator+=(), CGFields::StandardFields::operator+=(), oomph::DoubleMultiVector::operator+=(), Eigen::InnerIterator< XprType >::operator+=(), Eigen::SparseCompressedBase< Derived >::InnerIterator::operator+=(), NumericalVector< T >::operator-(), Eigen::SparseCompressedBase< Derived >::ReverseInnerIterator::operator-(), oomph::DoubleVector::operator-=(), NumericalVector< T >::operator-=(), CGFields::StandardFields::operator-=(), oomph::DoubleMultiVector::operator-=(), Eigen::SparseCompressedBase< Derived >::ReverseInnerIterator::operator-=(), Eigen::SparseMatrixBase< Derived >::operator/=(), SmallVector< numberOfRows >::operator<(), Eigen::operator<<(), operator<<(), oomph::operator<<(), Eigen::internal::operator<<(), oomph::DenseMatrix< T >::operator=(), oomph::RankFiveTensor< T >::operator=(), oomph::RankFourTensor< T >::operator=(), oomph::RankThreeTensor< T >::operator=(), oomph::DoubleMultiVector::operator==(), oomph::DoubleVector::operator==(), oomph::LinearAlgebraDistribution::operator==(), SmallVector< numberOfRows >::operator==(), operator>>(), Eigen::DimensionList< Index, Rank >::operator[](), Eigen::IndexList< FirstType, OtherTypes >::operator[](), Eigen::IndexPairList< FirstType, OtherTypes >::operator[](), oomph::VectorMatrix< VALUE_TYPE >::operator[](), oomph::Shape::operator[](), Eigen::AutoDiffVector< ValueType, JacobianType >::operator[](), pad::operator[](), Eigen::ArithmeticSequence< FirstType, SizeType, IncrType >::operator[](), Eigen::internal::pointer_based_stl_iterator< XprType >::operator[](), Eigen::internal::generic_randaccess_stl_iterator< XprType >::operator[](), Eigen::internal::subvector_stl_iterator< XprType, Direction >::operator[](), Eigen::internal::subvector_stl_reverse_iterator< XprType, Direction >::operator[](), Eigen::TranspositionsBase< Derived >::operator[](), Eigen::internal::ArithmeticSequenceRange< FirstAtCompileTime_, SizeAtCompileTime_, IncrAtCompileTime_ >::operator[](), Eigen::SparseMatrix< Scalar_, Options_, StorageIndex_ >::SingletonVector::operator[](), Eigen::internal::AllRange< SizeAtCompileTime_ >::operator[](), tetgenmesh::list::operator[](), oomph::DoubleVector::operator[](), NORMALIZED_POLYNOMIAL< T >::operator[](), Eigen::MaxSizeVector< T >::operator[](), Eigen::internal::scoped_array< T >::operator[](), oomph::PeriodicOrbitEquations::orbit_output(), internal::Colamd::order_children(), Eigen::internal::ordering_helper_at_plus_a(), OrrSommerfeldProblem< ELEMENT >::OrrSommerfeldProblem(), orthomethods(), orthomethods_3(), OscEllipseProblem< ELEMENT, TIMESTEPPER >::OscEllipseProblem(), OscRingNStProblem< ELEMENT >::OscRingNStProblem(), oomph::TriangleMeshParameters::outer_boundary_pt(), Eigen::internal::outer_product_selector_run(), oomph::FaceElement::outer_unit_normal(), STLReader::output(), oomph::CommandLineArgs::output(), oomph::HermiteBeamElement::output(), oomph::QExtrudedMacroElement< 3 >::output(), oomph::QMacroElement< 2 >::output(), oomph::QMacroElement< 3 >::output(), oomph::LinearisedAxisymmetricFluidInterfaceElement::output(), oomph::AdvectionDiffusionEquations< DIM >::output(), oomph::PolarNavierStokesEquations::output(), SSPorousChannelElement::output(), OrrSommerfeldEquations< DIM >::output(), RefineableBuoyantQCrouzeixRaviartElement< DIM >::output(), RefineableQCrouzeixRaviartElementWithExternalElement< DIM >::output(), RefineableQAdvectionDiffusionElementWithExternalElement< DIM >::output(), RefineableQAxisymAdvectionDiffusionBoussinesqElement::output(), QAxisymAdvectionDiffusionElementWithExternalElement::output(), NonIsothermalAxisymmetricQCrouzeixRaviartElement::output(), QThermalPVDElement< DIM >::output(), ModalPoissonEquations< DIM >::output(), oomph::DummyFaceElement< ELEMENT >::output(), oomph::QHermiteElement< DIM >::output(), oomph::LineVisualiser::output(), oomph::Node::output(), oomph::QSpectralElement< 1, NNODE_1D >::output(), oomph::QSpectralElement< 2, NNODE_1D >::output(), oomph::QSpectralElement< 3, NNODE_1D >::output(), oomph::DoubleMultiVector::output(), oomph::DenseMatrix< T >::output(), oomph::DoubleVector::output(), DistanceWrapper< ELEMENT >::output(), oomph::SCoupledElement< ELEMENT >::output(), oomph::NonlinearSurfaceContactElement< ELEMENT >::output(), oomph::LinearSurfaceContactElement< ELEMENT >::output(), oomph::UnsteadyHeatBaseFaceElement< ELEMENT >::output(), oomph::HeatedLinearSurfaceContactElement< ELEMENT >::output(), oomph::UnsteadyHeatFluxPseudoMeltElement< ELEMENT >::output(), oomph::HomogenisedLinearElasticityEquations< DIM >::output(), oomph::MultiPoissonEquations< DIM, NFIELDS >::output(), oomph::MySolidElement< ELEMENT >::output(), oomph::SpineAxisymmetricMarangoniSurfactantFluidInterfaceElement< ELEMENT >::output(), ElasticAxisymmetricSolubleSurfactantTransportInterfaceElement< ELEMENT >::output(), oomph::SpineLineMarangoniSurfactantFluidInterfaceElement< ELEMENT >::output(), oomph::SolubleSurfactantTransportInterfaceElement::output(), oomph::PolarStreamfunctionEquations::output(), oomph::AxisymmetricLinearElasticityEquations::output(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::output(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::output(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::output(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::output(), oomph::AxisymmetricPoroelasticityTractionElement< ELEMENT >::output(), oomph::FSILinearisedAxisymPoroelasticTractionElement< POROELASTICITY_BULK_ELEMENT, NAVIER_STOKES_BULK_ELEMENT >::output(), oomph::AxisymmetricPVDEquations::output(), oomph::AxisymDiagHermitePVDElement::output(), oomph::AxisymmetricPVDEquationsWithPressure::output(), oomph::FluidInterfaceElement::output(), oomph::SurfactantTransportInterfaceElement::output(), oomph::EulerEquations< DIM >::output(), oomph::DisplacementBasedFoepplvonKarmanEquations::output(), oomph::FoepplvonKarmanEquations::output(), oomph::FourierDecomposedHelmholtzEquations::output(), oomph::SolidQHermiteElement< DIM >::output(), oomph::QElement< 1, NNODE_1D >::output(), oomph::QElement< 2, NNODE_1D >::output(), oomph::QElement< 3, NNODE_1D >::output(), oomph::SolidQElement< 1, NNODE_1D >::output(), oomph::SolidQElement< 2, NNODE_1D >::output(), oomph::SolidQElement< 3, NNODE_1D >::output(), oomph::HelmholtzEquations< DIM >::output(), oomph::LinearElasticityEquations< DIM >::output(), oomph::FourierDecomposedTimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::output(), oomph::FourierDecomposedHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::output(), oomph::TimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::output(), oomph::HelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::output(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::output(), oomph::PMLHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::output(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::output(), oomph::PMLFourierDecomposedHelmholtzEquations::output(), oomph::PMLHelmholtzEquations< DIM >::output(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM >::output(), oomph::PoissonEquations< DIM >::output(), oomph::PoissonEquations< 1 >::output(), oomph::PVDEquations< DIM >::output(), oomph::PVDEquationsWithPressure< DIM >::output(), oomph::SolidTractionElement< ELEMENT >::output(), oomph::FSISolidTractionElement< ELEMENT, DIM >::output(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::output(), oomph::FSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::output(), oomph::SpaceTimeNavierStokesEquations< DIM >::output(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::output(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::output(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::output(), oomph::YoungLaplaceEquations::output(), oomph::VolumeCoupledElement< ELEMENT >::output(), oomph::TriangleMeshCurviLine::output(), oomph::TriangleMeshPolyLine::output(), oomph::TriangleMeshClosedCurve::output(), oomph::TriangleMeshOpenCurve::output(), oomph::ElementWithMortaringStatusAtNodes< ELEMENT >::output(), oomph::LinearisedAxisymmetricNavierStokesEquations::output(), output(), oomph::TLinearHeatAndElasticityElement< DIM, NNODE_1D >::output(), oomph::HeatedPenetratorFluxElement< ELEMENT >::output(), oomph::THomogenisedLinearElasticityElement< DIM, NNODE_1D >::output(), oomph::RefineableBuoyantQAxisymCrouzeixRaviartElement::output(), oomph::DoubleBuoyantQCrouzeixRaviartElement< DIM >::output(), oomph::AxisymmetricQAdvectionCrouzeixRaviartElement::output(), oomph::RefineableBuoyantQSphericalCrouzeixRaviartElement::output(), oomph::RefineableDoubleBuoyantQCrouzeixRaviartElement< DIM >::output(), oomph::NavierStokesElementWithSingularity< BASIC_NAVIER_STOKES_ELEMENT >::output(), oomph::MyTaylorHoodElement< DIM >::output(), oomph::MyCrouzeixRaviartElement::output(), PoissonElementWithSingularity< BASIC_POISSON_ELEMENT >::output(), Rotateable< ELEMENT >::output(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::output(), oomph::QSUPGAdvectionDiffusionElement< DIM, NNODE_1D >::output(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::output(), oomph::AxisymAdvectionDiffusionEquations::output(), oomph::AxisymmetricNavierStokesEquations::output(), oomph::AxisymmetricPoroelasticityEquations::output(), oomph::BiharmonicEquations< DIM >::output(), oomph::DarcyEquations< DIM >::output(), oomph::FluxTransportEquations< DIM >::output(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::output(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output(), oomph::TElement< 1, NNODE_1D >::output(), oomph::TElement< 2, NNODE_1D >::output(), oomph::TElement< 3, NNODE_1D >::output(), oomph::LinearWaveEquations< DIM >::output(), oomph::LinearisedNavierStokesEquations::output(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::output(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::output(), oomph::RefineableAdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::output(), oomph::AdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::output(), oomph::NavierStokesEquations< DIM >::output(), oomph::NavierStokesEquations< 2 >::output(), oomph::VorticitySmootherElement< ELEMENT >::output(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::output(), oomph::PoissonFluxElement< ELEMENT >::output(), oomph::PoroelasticityEquations< DIM >::output(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::output(), oomph::ProjectableUnsteadyHeatSpaceTimeElement< UNSTEADY_HEAT_ELEMENT >::output(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::output(), oomph::ProjectableUnsteadyHeatMixedOrderSpaceTimeElement< UNSTEADY_HEAT_ELEMENT >::output(), oomph::SphericalAdvectionDiffusionEquations::output(), oomph::SphericalNavierStokesEquations::output(), oomph::SteadyAxisymAdvectionDiffusionEquations::output(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::output(), oomph::UnsteadyHeatEquations< DIM >::output(), oomph::ProjectableUnsteadyHeatElement< UNSTEADY_HEAT_ELEMENT >::output(), oomph::WomersleyEquations< DIM >::output(), oomph::DummyBrickElement::output(), oomph::WomersleyEquations< DIM >::output_3d(), oomph::VorticitySmootherElement< ELEMENT >::output_analytical_veloc_and_vorticity(), oomph::SolarRadiationBase::output_atmospheric_radiation(), RefineableBinArray::output_bin_vertices(), NonRefineableBinArray::output_bin_vertices(), RefineableBinArray::output_bins(), NonRefineableBinArray::output_bins(), oomph::BlockPreconditioner< MATRIX >::output_blocks_to_files(), oomph::DiskLikeGeomObjectWithBoundaries::output_boundaries_and_triads(), oomph::TriangleMesh< ELEMENT >::output_boundary_coordinates(), oomph::SolarRadiationBase::output_diffuse_radiation_cone(), oomph::SolarRadiationBase::output_diffuse_radiation_cone_max_angle(), oomph::SolarRadiationBase::output_diffuse_radiation_cone_min_angle(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::output_element_paraview(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::output_element_paraview(), oomph::ElementWithExternalElement::output_external_elements(), ModalPoissonEquations< DIM >::output_fct(), oomph::MultiPoissonEquations< DIM, NFIELDS >::output_fct(), oomph::DisplacementBasedFoepplvonKarmanEquations::output_fct(), oomph::FoepplvonKarmanEquations::output_fct(), oomph::FourierDecomposedHelmholtzEquations::output_fct(), oomph::HelmholtzEquations< DIM >::output_fct(), oomph::PMLFourierDecomposedHelmholtzEquations::output_fct(), oomph::PMLHelmholtzEquations< DIM >::output_fct(), oomph::PoissonEquations< 1 >::output_fct(), oomph::PoissonEquations< DIM >::output_fct(), oomph::YoungLaplaceEquations::output_fct(), oomph::NavierStokesEquations< 2 >::output_fct(), Rotateable< ELEMENT >::output_fct(), oomph::AdvectionDiffusionEquations< DIM >::output_fct(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::output_fct(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::output_fct(), oomph::AxisymAdvectionDiffusionEquations::output_fct(), oomph::AxisymmetricLinearElasticityEquations::output_fct(), oomph::AxisymmetricNavierStokesEquations::output_fct(), oomph::AxisymmetricPoroelasticityEquations::output_fct(), oomph::BiharmonicEquations< DIM >::output_fct(), oomph::DarcyEquations< DIM >::output_fct(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::output_fct(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output_fct(), oomph::LinearElasticityEquations< DIM >::output_fct(), oomph::LinearWaveEquations< DIM >::output_fct(), oomph::NavierStokesEquations< DIM >::output_fct(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM >::output_fct(), oomph::PolarNavierStokesEquations::output_fct(), oomph::PoroelasticityEquations< DIM >::output_fct(), oomph::SpaceTimeNavierStokesEquations< DIM >::output_fct(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::output_fct(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::output_fct(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::output_fct(), oomph::SphericalAdvectionDiffusionEquations::output_fct(), oomph::SphericalNavierStokesEquations::output_fct(), oomph::SteadyAxisymAdvectionDiffusionEquations::output_fct(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::output_fct(), oomph::TimeHarmonicLinearElasticityEquations< DIM >::output_fct(), oomph::UnsteadyHeatEquations< DIM >::output_fct(), oomph::UnsteadyHeatEquations< 2 >::output_fct(), oomph::WomersleyEquations< DIM >::output_fct(), oomph::Mesh::output_fct_paraview(), oomph::BiharmonicEquations< DIM >::output_fluid_velocity(), oomph::PMLHelmholtzEquations< DIM >::output_imag(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM >::output_imag(), oomph::PMLHelmholtzEquations< DIM >::output_imag_fct(), oomph::SolarRadiationBase::output_limiting_angles(), oomph::DoubleVector::output_local_values(), oomph::DoubleVector::output_local_values_with_offset(), oomph::MyProblem::output_ltes(), oomph::Domain::output_macro_element_boundaries(), oomph::QExtrudedMacroElement< 3 >::output_macro_element_boundaries(), oomph::QMacroElement< 3 >::output_macro_element_boundaries(), oomph::SurfaceMeltElement< ELEMENT >::output_melt(), RefineableBinArray::output_neighbouring_bins(), oomph::FiniteElement::output_paraview(), oomph::Mesh::output_paraview(), oomph::NavierStokesEquations< DIM >::output_pressure_advection_diffusion_robin_elements(), oomph::SpaceTimeNavierStokesEquations< DIM >::output_pressure_advection_diffusion_robin_elements(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::output_pressure_advection_diffusion_robin_elements(), oomph::FourierDecomposedHelmholtzEquations::output_real(), oomph::HelmholtzEquations< DIM >::output_real(), oomph::PMLFourierDecomposedHelmholtzEquations::output_real(), oomph::PMLHelmholtzEquations< DIM >::output_real(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM >::output_real(), oomph::FourierDecomposedHelmholtzEquations::output_real_fct(), oomph::HelmholtzEquations< DIM >::output_real_fct(), oomph::PMLFourierDecomposedHelmholtzEquations::output_real_fct(), oomph::PMLHelmholtzEquations< DIM >::output_real_fct(), oomph::VorticitySmootherElement< ELEMENT >::output_smoothed_vorticity(), oomph::ODEProblem::output_solution(), oomph::StefanBoltzmannUnsteadyHeatFluxElement< ELEMENT >::output_stefan_boltzmann_radiation(), PolarNSProblem< ELEMENT >::output_streamfunction(), oomph::PMLHelmholtzEquations< DIM >::output_total_real(), oomph::PMLTimeHarmonicLinearElasticityEquations< DIM >::output_total_real(), oomph::LinearisedAxisymmetricNavierStokesEquations::output_veloc(), oomph::AxisymmetricNavierStokesEquations::output_veloc(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::output_veloc(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output_veloc(), oomph::LinearisedNavierStokesEquations::output_veloc(), oomph::NavierStokesEquations< DIM >::output_veloc(), oomph::PolarNavierStokesEquations::output_veloc(), oomph::SpaceTimeNavierStokesEquations< DIM >::output_veloc(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::output_veloc(), oomph::SphericalNavierStokesEquations::output_veloc(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::output_vorticity(), oomph::SpaceTimeNavierStokesEquations< DIM >::output_vorticity(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::output_vorticity(), oomph::SphericalNavierStokesEquations::output_vorticity(), oomph::DarcyEquations< DIM >::output_with_projected_flux(), oomph::FaceElement::output_zeta(), Eigen::internal::outputResults(), Eigen::internal::outputResultsVSX(), DPMBase::outputXBallsData(), LiquidMigrationMPI2Test::outputXBallsData(), LiquidMigrationSelfTest::outputXBallsData(), SphericalIndenter::outputXBallsData(), ChuteWithPeriodicInflow::outputXBallsDataParticlee(), ABCElement::p(), QOrrSommerfeldElement< 1, NNODE_1D >::p(), oomph::TreeBasedRefineableMeshBase::p_adapt_mesh(), oomph::AxisymmetricQCrouzeixRaviartElement::p_axi_nst(), oomph::AxisymmetricTCrouzeixRaviartElement::p_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::p_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricTCrouzeixRaviartElement::p_axi_nst(), oomph::NavierStokesElementWithSingularity< BASIC_NAVIER_STOKES_ELEMENT >::p_bar(), oomph::LinearisedAxisymmetricQTaylorHoodElement::p_index_lin_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::p_index_linearised_axi_nst(), oomph::LinearisedQTaylorHoodElement::p_index_linearised_nst(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::p_lin_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::p_lin_axi_nst(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::p_linearised_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::p_linearised_axi_nst(), oomph::LinearisedQCrouzeixRaviartElement::p_linearised_nst(), oomph::LinearisedQTaylorHoodElement::p_linearised_nst(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::p_local_eqn(), oomph::LinearisedAxisymmetricQTaylorHoodElement::p_local_eqn(), oomph::LinearisedQCrouzeixRaviartElement::p_local_eqn(), oomph::LinearisedQTaylorHoodElement::p_local_eqn(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::p_nst(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::p_nst(), oomph::QCrouzeixRaviartElement< DIM >::p_nst(), oomph::TCrouzeixRaviartElement< DIM >::p_nst(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::p_nst(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::p_nst(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::p_refine(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::p_refine(), oomph::Tree::p_refine_if_required(), oomph::Problem::p_refine_uniformly_aux(), oomph::QSphericalCrouzeixRaviartElement::p_spherical_nst(), Eigen::internal::symm_pack_lhs< Scalar, Index, Pack1, Pack2_dummy, StorageOrder >::pack(), Eigen::TensorEvaluator< const TensorConvolutionOp< Indices, InputArgType, KernelArgType >, Device >::packet(), Eigen::internal::minmax_coeff_visitor< Derived, is_min, PropagateNumbers, false >::packet(), Eigen::internal::minmax_coeff_visitor< Derived, is_min, NaNPropagation, false >::packet(), Eigen::internal::evaluator< PartialReduxExpr< ArgType, MemberOp, Direction > >::packet(), Eigen::TensorEvaluator< const TensorChippingOp< DimId, ArgType >, Device >::packet(), Eigen::TensorEvaluator< const TensorConcatenationOp< Axis, LeftArgType, RightArgType >, Device >::packet(), Eigen::PacketConverter< TensorEvaluator, SrcPacket, TgtPacket, 1, TgtCoeffRatio >::packet(), Eigen::TensorEvaluator< const TensorSelectOp< IfArgType, ThenArgType, ElseArgType >, Device >::packet(), Eigen::TensorEvaluator< const TensorGeneratorOp< Generator, ArgType >, Device >::packet(), Eigen::TensorEvaluator< const TensorInflationOp< Strides, ArgType >, Device >::packet(), Eigen::TensorEvaluator< const TensorSlicingOp< StartIndices, Sizes, ArgType >, Device >::packet(), Eigen::TensorEvaluator< const TensorPatchOp< PatchDim, ArgType >, Device >::packet(), Eigen::TensorReductionEvaluatorBase< const TensorReductionOp< Op, Dims, ArgType, MakePointer_ >, Device >::packet(), Eigen::TensorEvaluator< const TensorReverseOp< ReverseDimensions, ArgType >, Device >::packet(), Eigen::TensorEvaluator< const TensorRollOp< RollDimensions, ArgType >, Device >::packet(), Eigen::TensorEvaluator< const TensorStridingOp< Strides, ArgType >, Device >::packet(), Eigen::TensorEvaluator< const TensorTraceOp< Dims, ArgType >, Device >::packet(), Eigen::internal::unary_evaluator< CoherentPadOp< ArgType, SizeAtCompileTime > >::packet(), TrackedVisitor< Derived, Vectorizable >::packet(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::packetColMajor(), Eigen::TensorEvaluator< const TensorPaddingOp< PaddingDimensions, ArgType >, Device >::packetColMajor(), packetmath(), packetmath_boolean_mask_ops(), packetmath_boolean_mask_ops_real(), packetmath_complex(), packetmath_notcomplex(), packetmath_real(), packetmath_scatter_gather(), packetmath_test_IEEE_corner_cases(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::packetNByOne(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::packetOneByN(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::packetOneByNByOne(), Eigen::internal::nullary_wrapper< Scalar, NullaryOp, has_nullary, has_unary, has_binary >::packetOp(), Eigen::internal::nullary_wrapper< Scalar, NullaryOp, false, true, false >::packetOp(), Eigen::internal::nullary_wrapper< Scalar, NullaryOp, false, false, true >::packetOp(), MyGenerator::packetOp(), Eigen::internal::UniformRandomGenerator< T >::packetOp(), Eigen::internal::NormalRandomGenerator< T >::packetOp(), Eigen::internal::linspaced_op_impl< Scalar, false >::packetOp(), Eigen::internal::linspaced_op< Scalar >::packetOp(), Eigen::internal::equalspaced_op< Scalar >::packetOp(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::packetRowMajor(), Eigen::TensorEvaluator< const TensorPaddingOp< PaddingDimensions, ArgType >, Device >::packetRowMajor(), Eigen::TensorEvaluator< const TensorImagePatchOp< Rows, Cols, ArgType >, Device >::packetWithPossibleZero(), Eigen::TensorEvaluator< const TensorPaddingOp< PaddingDimensions, ArgType >, Device >::packetWithPossibleZero(), Eigen::TensorEvaluator< const TensorVolumePatchOp< Planes, Rows, Cols, ArgType >, Device >::packetWithPossibleZero(), HertzianBSHPInteractionTwoParticleElasticCollision::padeCoefficientOfRestitution(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::panel_bmod(), parallel_test(), Eigen::CoreThreadPoolDevice::parallelForImpl(), ElasticBeamProblem::parameter_study(), EulerProblem::parameter_study(), CapProblem< ELEMENT >::parameter_study(), PseudoSolidCapProblem< ELEMENT >::parameter_study(), StaticDiskCompressionProblem< ELEMENT >::parameter_study(), ElasticRingProblem< ELEMENT >::parameter_study(), SphericalSteadyRotationProblem< ELEMENT >::parameter_study(), AdvectionProblem::parameter_study(), rapidjson::GenericReader< Encoding, Allocator >::ParseHex4(), rapidjson::GenericReader< Encoding, Allocator >::ParseNumber(), rapidjson::GenericReader< Encoding, Allocator >::ParseString(), ParticleBeam::ParticleBeam(), Global_Physical_Variables::pcos_load(), HGridOptimiser::pdfInt(), HGridOptimiser::pdfIntCell(), StabilityProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::perform_power_method(), Eigen::RealSchur< MatrixType_ >::performFrancisQRStep(), PeriodicBoundaryHandler::performNewParticleTransmission(), permutationmatrices(), Eigen::PermutationMatrix< SizeAtCompileTime, MaxSizeAtCompileTime, StorageIndex_ >::PermutationMatrix(), Eigen::internal::permutation_matrix_product< ExpressionType, Side, Transposed, SparseShape >::permute_inner(), Eigen::internal::permute_symm_to_fullsymm(), Eigen::internal::permute_symm_to_symm(), Eigen::BDCSVD< MatrixType_, Options_ >::perturbCol0(), oomph::PerturbedSpineMesh::perturbed_spine_pt(), oomph::PerturbedSpine::PerturbedSpine(), oomph::PerturbedSpineLinearisedAxisymmetricFluidInterfaceElement< ELEMENT >::PerturbedSpineLinearisedAxisymmetricFluidInterfaceElement(), PerturbedStateProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::PerturbedStateProblem(), Eigen::internal::peven_mask(), Eigen::internal::pgather< int8_t, Packet4c >(), Eigen::internal::pgather< uint8_t, Packet4uc >(), Eigen::internal::pgather_common(), Eigen::internal::pgather_complex_size2(), Eigen::internal::pgather_partial(), oomph::Data::pin(), oomph::Data::pin_all(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::pin_all(), FlowAroundCylinderProblem< ELEMENT >::pin_all_base_flow_dofs(), oomph::FpPressureAdvectionDiffusionProblem< ELEMENT >::pin_all_non_pressure_dofs(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::pin_all_non_pressure_dofs(), oomph::NavierStokesEquations< DIM >::pin_all_non_pressure_dofs(), oomph::SpaceTimeNavierStokesEquations< DIM >::pin_all_non_pressure_dofs(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::pin_all_non_pressure_dofs(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::pin_all_spines(), PolarNSProblem< ELEMENT >::pin_boundaries(), oomph::StreamfunctionProblem::pin_boundaries(), oomph::ImmersedRigidBodyElement::pin_centre_of_mass_coordinate(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableLinearisedQTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::SegregatableFSIProblem::pin_fluid_dofs(), MortaringValidationProblem< ELEMENT, NON_MORTAR_ELEMENT >::pin_mortared_status_dofs(), oomph::SolidNode::pin_position(), oomph::LinearisedQCrouzeixRaviartElement::pin_pressure_normalisation_dofs(), oomph::LinearisedQCrouzeixRaviartElement::pin_real_or_imag(), NavierStokesProblem< ELEMENT >::pin_redundant_temporal_nodes(), UnsteadyHeatProblem< ELEMENT >::pin_redundant_temporal_nodes(), UnstructuredImmersedEllipseProblem< ELEMENT >::pin_rigid_body(), oomph::VorticitySmootherElement< ELEMENT >::pin_smoothed_vorticity(), oomph::SegregatableFSIProblem::pin_solid_dofs(), oomph::StreamfunctionProblem::pin_velocities(), Eigen::PlainObjectBase< Derived >::PlainObjectBase(), planes(), PlateProblem< ELEMENT >::PlateProblem(), oomph::Legendre_functions_helper::plgndr1(), oomph::Legendre_functions_helper::plgndr2(), Eigen::internal::pload_partial(), pload_realimag(), pload_realimag_row(), Eigen::internal::ploadu_partial(), PlanarWave::plot(), oomph::MGSolver< DIM >::plot(), GlobalFct::plot_it(), oomph::UnsteadyHeatFluxPseudoMeltElement< ELEMENT >::plot_residual_landscape(), Eigen::internal::plset< PacketXf >(), Eigen::internal::plset< PacketXi >(), oomph::PMLQuadMeshBase< ELEMENT >::pml_locate_zeta(), PMLHelmholtzMGProblem< ELEMENT >::PMLHelmholtzMGProblem(), PMLProblem< ELEMENT >::PMLProblem(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::PMLTimeHarmonicLinearElasticityTractionElement(), oomph::PolygonHelper::point_is_in_polygon(), oomph::FiniteElement::point_output(), oomph::AxisymmetricNavierStokesEquations::point_output_data(), oomph::AxisymmetricPoroelasticityEquations::point_output_data(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::point_output_data(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::point_output_data(), oomph::NavierStokesEquations< DIM >::point_output_data(), oomph::PoissonEquations< DIM >::point_output_data(), oomph::SpaceTimeNavierStokesEquations< DIM >::point_output_data(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::point_output_data(), MortaringHelpers::PointElementWithExternalElement::PointElementWithExternalElement(), oomph::SegregatableFSIProblem::pointwise_aitken_extrapolate(), PoissonProblem< ELEMENT >::PoissonProblem(), Eigen::poly_eval(), Eigen::poly_eval_horner(), polyder(), PolydisperseInsertionBoundary::PolydisperseInsertionBoundary(), oomph::TriangleMeshPolygon::polyline_pt(), oomph::TriangleMeshOpenCurve::polyline_pt(), oomph::MeshAsGeomObject::position(), oomph::PseudoBucklingRing::position(), GeneralCircle::position(), oomph::Node::position(), oomph::SolidNode::position_eqn_number(), oomph::Node::position_gen(), oomph::NodeElementSolidOnlyMortaringElement::position_in_element(), oomph::SolidNode::position_is_a_copy(), oomph::SolidNode::position_is_pinned(), RayleighProblem< ELEMENT, TIMESTEPPER >::possibly_disable_ALE(), RefineableUnsteadyHeatProblem< ELEMENT >::possibly_disable_ALE(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::pre_build(), oomph::StorableShapeElementBase::pre_compute_d2shape_eulerian_at_knots(), oomph::StorableShapeSolidElementBase::pre_compute_d2shape_lagrangian_at_knots(), oomph::StorableShapeElementBase::pre_compute_d2shape_local_at_knots(), oomph::StorableShapeElementBase::pre_compute_dshape_eulerian_at_knots(), oomph::StorableShapeSolidElementBase::pre_compute_dshape_lagrangian_at_knots(), oomph::StorableShapeElementBase::pre_compute_dshape_local_at_knots(), oomph::Diagonal< MATRIX >::preconditioner_solve(), oomph::SimpleTwoDofOnly< MATRIX >::preconditioner_solve(), oomph::UpperTriangular< MATRIX >::preconditioner_solve(), oomph::SimpleBlockDiagonalPreconditioner< MATRIX >::preconditioner_solve(), oomph::BlockDiagonalPreconditioner< MATRIX >::preconditioner_solve(), oomph::BlockTriangularPreconditioner< MATRIX >::preconditioner_solve(), oomph::MatrixBasedDiagPreconditioner::preconditioner_solve(), oomph::MatrixBasedLumpedPreconditioner< MATRIX >::preconditioner_solve(), oomph::ILUZeroPreconditioner< CCDoubleMatrix >::preconditioner_solve(), oomph::ILUZeroPreconditioner< CRDoubleMatrix >::preconditioner_solve(), oomph::LagrangeEnforcedFlowPreconditioner::preconditioner_solve(), oomph::BandedBlockTriangularPreconditioner< MATRIX >::preconditioner_solve(), oomph::GMRESBlockPreconditioner::preconditioner_solve(), oomph::PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld::preconditioner_solve(), Eigen::internal::predux_helper(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType >::prefetch(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::prefetch(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::prefetch(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType, Incr >::prefetch(), Eigen::internal::gemm_class< Scalar, is_unit_inc >::prefetch_cs(), PRefineableDrivenCavityProblem< ELEMENT >::PRefineableDrivenCavityProblem(), PRefineableOneDPoissonProblem< ELEMENT >::PRefineableOneDPoissonProblem(), SolidProblem< ELEMENT_TYPE >::prepareForSolve(), PeriodicBoundaryHandler::preparePositionAndVelocityUpdate(), GlobalParameters::prescribed_incoming_flux(), PrescribedBoundaryDisplacementProblem< ELEMENT >::PrescribedBoundaryDisplacementProblem(), Global_Physical_Variables::press_load(), Global_Parameters::press_load(), oomph::AxisymmetricNavierStokesEquations::pressure_integral(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::pressure_integral(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::pressure_integral(), oomph::NavierStokesEquations< DIM >::pressure_integral(), oomph::PolarNavierStokesEquations::pressure_integral(), oomph::SpaceTimeNavierStokesEquations< DIM >::pressure_integral(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::pressure_integral(), oomph::SphericalNavierStokesEquations::pressure_integral(), Global_Parameters::pressure_load(), oomph::NavierStokesElementWithSingularity< BASIC_NAVIER_STOKES_ELEMENT >::pressure_singular_function(), PressureWaveFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::PressureWaveFSIProblem(), oomph::KirchhoffLoveShellEquations::prestress(), oomph::PVDEquationsBase< DIM >::prestress(), Eigen::internal::print_matrix(), print_stacktrace(), printError(), printFatalError(), inflowFromPeriodic::printTime(), LawinenBox::printTime(), ChuteWithPeriodicInflow::printTime(), ForceLawsMPI2Test::printTime(), LiquidMigrationMPI2Test::printTime(), MeltableForceLaw2SelfTest::printTime(), MeltableForceLawSelfTest::printTime(), ThermalConductionSelfTest::printTime(), LiquidMigrationSelfTest::printTime(), TwoParticleElasticCollisionInteraction::printTime(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::processDataLineBluestein(), WearableNurbsWall::processDebris(), WearableTriangulatedWall::processDebris(), PeriodicBoundaryHandler::processLocalGhostParticles(), PeriodicBoundaryHandler::processLocalInteractionData(), PeriodicBoundaryHandler::processPeriodicParticles(), Domain::processReceivedBoundaryParticleData(), PeriodicBoundaryHandler::processReceivedInteractionData(), Eigen::internal::sparse_time_dense_product_impl< SparseLhsType, DenseRhsType, DenseResType, typename DenseResType::Scalar, RowMajor, true >::processRow(), Eigen::internal::sparse_time_dense_product_impl< SparseLhsType, DenseRhsType, DenseResType, typename DenseResType::Scalar, RowMajor, false >::processRow(), statistics_while_running< T >::processStatistics(), product(), product_extra(), BinArray::profile_get_neighbouring_bins_helper(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::project(), oomph::RectangleWithHoleAndAnnularRegionDomain::project_point_on_cylinder_to_annular_boundary(), Eigen::SparseMatrix< Scalar_, Options_, StorageIndex_ >::prune(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::prune(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::pruneL(), Eigen::internal::pscatter< half, Packet32h >(), Eigen::internal::pscatter< int8_t, Packet4c >(), Eigen::internal::pscatter< uint8_t, Packet4uc >(), Eigen::internal::pscatter_common(), Eigen::internal::pscatter_complex_size2(), Eigen::internal::pscatter_partial(), oomph::PseudoBucklingRingElement::PseudoBucklingRingElement(), Eigen::EigenSolver< MatrixType_ >::pseudoEigenvalueMatrix(), PseudoElasticCollapsibleChannelProblem< FLUID_ELEMENT, SOLID_ELEMENT >::PseudoElasticCollapsibleChannelProblem(), oomph::AxisymmetricQTaylorHoodElement::pshape_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::pshape_axi_nst(), oomph::AxisymmetricQCrouzeixRaviartElement::pshape_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::pshape_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::pshape_lin_axi_nst(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::pshape_lin_axi_nst(), oomph::LinearisedAxisymmetricQTaylorHoodElement::pshape_linearised_axi_nst(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::pshape_linearised_axi_nst(), oomph::LinearisedQTaylorHoodElement::pshape_linearised_nst(), oomph::LinearisedQCrouzeixRaviartElement::pshape_linearised_nst(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::pshape_nst(), oomph::PRefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::pshape_nst(), oomph::QTaylorHoodElement< DIM >::pshape_nst(), oomph::PRefineableQCrouzeixRaviartElement< DIM >::pshape_nst(), oomph::QTaylorHoodSpaceTimeElement< DIM >::pshape_nst(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::pshape_nst(), oomph::PolarTaylorHoodElement::pshape_pnst(), oomph::PolarCrouzeixRaviartElement::pshape_pnst(), oomph::QSphericalTaylorHoodElement::pshape_spherical_nst(), oomph::QSphericalCrouzeixRaviartElement::pshape_spherical_nst(), Eigen::internal::psqrt(), Eigen::internal::psqrt< Packet4f >(), Eigen::internal::pstore_partial(), Eigen::internal::pstoreu_partial(), oomph::QTaylorHoodSpaceTimeElement< DIM >::ptest_nst(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::ptest_nst(), Eigen::internal::ptranspose(), Eigen::internal::detail::ptranspose_impl(), rapidjson::GenericWriteStream::PutN(), rapidjson::PutN(), QFaceTestProblem< ELEMENT >::QFaceTestProblem(), QOrrSommerfeldElement< 1, NNODE_1D >::QOrrSommerfeldElement(), qr(), qr_fixedsize(), qr_invertible(), qr_kahan_matrix(), Eigen::internal::qrsolv(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::quad_hang_helper(), oomph::RefineableQElement< 2 >::quad_hang_helper(), oomph::QuadTreeForest::quad_neigh_pt(), oomph::QuadTreeForest::quadtree_pt(), QuarterCircleDrivenCavityProblem< ELEMENT >::QuarterCircleDrivenCavityProblem(), QuarterCircleDrivenCavityProblem2< ELEMENT >::QuarterCircleDrivenCavityProblem2(), oomph::QuarterCircleSectorDomain::QuarterCircleSectorDomain(), oomph::QuarterPipeDomain::QuarterPipeDomain(), oomph::QuarterTubeDomain::QuarterTubeDomain(), oomph::QuarterTubeMesh< ELEMENT >::QuarterTubeMesh(), Eigen::internal::r1mpyq(), Eigen::internal::r1updt(), oomph::QuarterPipeDomain::r_B(), oomph::QuarterPipeDomain::r_D(), oomph::QuarterPipeDomain::r_F(), oomph::EighthSphereDomain::r_front_D(), oomph::EighthSphereDomain::r_front_F(), oomph::EighthSphereDomain::r_front_L(), oomph::QuarterPipeDomain::r_L(), oomph::QuarterPipeDomain::r_R(), oomph::EighthSphereDomain::r_right_B(), oomph::EighthSphereDomain::r_right_D(), oomph::EighthSphereDomain::r_right_F(), oomph::EighthSphereDomain::r_right_R(), oomph::EighthSphereDomain::r_right_U(), oomph::QuarterPipeDomain::r_U(), oomph::EighthSphereDomain::r_up_B(), oomph::EighthSphereDomain::r_up_F(), oomph::EighthSphereDomain::r_up_L(), oomph::EighthSphereDomain::r_up_U(), RandomBlock(), RandomDims(), RandomMatrix(), randomMatrixWithRealEivals(), Eigen::randomPermutationVector(), randomTest(), oomph::HangInfo::range_check(), oomph::Shape::range_check(), oomph::DShape::range_check(), oomph::ElasticityTensor::range_check(), oomph::PMLTimeHarmonicElasticityTensor::range_check(), oomph::TimeHarmonicElasticityTensor::range_check(), oomph::Data::range_check(), oomph::Matrix< T, MATRIX_TYPE >::range_check(), oomph::RankThreeTensor< T >::range_check(), oomph::RankFourTensor< T >::range_check(), oomph::RankFiveTensor< T >::range_check(), Eigen::FullPivLU< MatrixType_, PermutationIndex_ >::rank(), Eigen::ColPivHouseholderQR< MatrixType_, PermutationIndex_ >::rank(), Eigen::FullPivHouseholderQR< MatrixType_, PermutationIndex_ >::rank(), Eigen::SVDBase< Derived >::rank(), oomph::LinearAlgebraDistribution::rank_of_global_row(), oomph::RankFiveTensor< T >::RankFiveTensor(), oomph::RankFourTensor< T >::RankFourTensor(), oomph::RankThreeTensor< T >::RankThreeTensor(), Eigen::LDLT< MatrixType_, UpLo_ >::rankUpdate(), oomph::RankFourTensor< T >::raw_direct_access(), oomph::RankFiveTensor< T >::raw_direct_access(), oomph::DShape::raw_direct_access(), oomph::FiniteElement::raw_dnodal_position_dt(), oomph::FiniteElement::raw_dnodal_position_gen_dt(), oomph::SolidFiniteElement::raw_lagrangian_position(), oomph::SolidFiniteElement::raw_lagrangian_position_gen(), oomph::FiniteElement::raw_nodal_position(), oomph::FiniteElement::raw_nodal_position_gen(), oomph::FiniteElement::raw_nodal_value(), oomph::Node::raw_value(), Eigen::internal::rcond_invmatrix_L1_norm_estimate(), FileReader::read(), oomph::Mesh::read(), oomph::Data::read(), oomph::Problem::read(), BaseHandler< T >::read(), InteractionHandler::read(), AxisymmetricIntersectionOfWalls::read(), ConstantMassFlowMaserBoundary::read(), DropletBoundary::read(), InsertionBoundary::read(), SubcriticalMaserBoundary::read(), ClumpParticle::read(), BaseWall::read(), BasicIntersectionOfWalls::read(), BasicUnionOfWalls::read(), HorizontalScrew::read(), IntersectionOfWalls::read(), Membrane::read(), MeshTriangle::read(), TriangleMeshWall::read(), TriangleWall::read(), DPMBase::read(), oomph::TreeBasedRefineableMeshBase::read_refinement(), SpeciesHandler::readAndAddObject(), WallHandler::readAndCreateOldObject(), DPMBase::readArguments(), helpers::readArrayFromCommandLine(), helpers::readArrayFromFile(), helpers::readFromCommandLine(), DPMBase::readNextArgument(), AxisymmetricHopper::readNextArgument(), Funnel::readNextArgument(), FlowRule::readNextArgument(), SilbertPeriodic::readNextArgument(), Chute::readNextArgument(), ChuteWithHopper::readNextArgument(), Mercury3DRestart::readNextArgument(), MercuryBase::readNextArgument(), GranularJet::readNextArgument(), DPMBase::readNextDataFile(), DPMBase::readRestartFile(), WallHandler::readTriangleWall(), helpers::readVectorFromCommandLine(), TriangulatedWall::readVTK(), real_qz(), Eigen::PolynomialSolverBase< Scalar_, Deg_ >::realRoots(), realRoots_to_monicPolynomial_test(), BrethertonElement< ELEMENT >::reassign_inflow(), oomph::RefineableLinearisedAxisymmetricQCrouzeixRaviartElement::rebuild_from_sons(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::RefineableQSpectralElement< 3 >::rebuild_from_sons(), oomph::RefineableQSpectralElement< 2 >::rebuild_from_sons(), oomph::RefineableLinearisedQCrouzeixRaviartElement::rebuild_from_sons(), oomph::SegregatableFSIProblem::rebuild_monolithic_mesh(), oomph::VorticitySmoother< ELEMENT >::recover_vorticity(), oomph::VorticitySmootherElement< ELEMENT >::recovered_dof_to_container_id(), oomph::RectangleWithHoleAndAnnularRegionDomain::RectangleWithHoleAndAnnularRegionDomain(), oomph::RectangleWithHoleDomain::RectangleWithHoleDomain(), RectangleWithHoleDomain::RectangleWithHoleDomain(), RectangularDrivenCavityProblem< ELEMENT >::RectangularDrivenCavityProblem(), oomph::DoubleMultiVector::redistribute(), oomph::DoubleVector::redistribute(), oomph::CRDoubleMatrix::redistribute(), Eigen::ComplexSchur< MatrixType_ >::reduceToTriangularForm(), ref_matrix(), ref_prod(), oomph::AlgebraicNode::ref_value(), ref_vector(), ref_vector_fixed_sizes(), oomph::TreeBasedRefineableMeshBase::refine_as_in_reference_mesh(), oomph::TreeBasedRefineableMeshBase::refine_base_mesh(), oomph::Problem::refine_uniformly_aux(), oomph::RefineableSolidTractionElement< ELEMENT >::refineable_fill_in_contribution_to_residuals_solid_traction(), oomph::RefineableImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::refineable_fill_in_generic_contribution_to_residuals_displ_lagr_multiplier(), oomph::RefineableFSIImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::refineable_fill_in_generic_contribution_to_residuals_fsi_displ_lagr_multiplier(), oomph::RefineableNavierStokesSpaceTimeTractionElement< ELEMENT >::refineable_fill_in_generic_residual_contribution_fluid_traction(), oomph::RefineableNavierStokesMixedOrderSpaceTimeTractionElement< ELEMENT >::refineable_fill_in_generic_residual_contribution_fluid_traction(), oomph::RefineableNavierStokesTractionElement< ELEMENT >::refineable_fill_in_generic_residual_contribution_fluid_traction(), oomph::RefineableNavierStokesFluxControlElement< ELEMENT >::refineable_fill_in_generic_residual_contribution_fluid_traction(), RefineableActivatorInhibitorProblem< ELEMENT >::RefineableActivatorInhibitorProblem(), RefineableAdvectionDiffusionPipeProblem< ELEMENT >::RefineableAdvectionDiffusionPipeProblem(), RefineableAdvectionDiffusionProblem< ELEMENT >::RefineableAdvectionDiffusionProblem(), RefineableBinArray::RefineableBinArray(), RefineableConvectionProblem< NST_ELEMENT, AD_ELEMENT >::RefineableConvectionProblem(), RefineableDDConvectionProblem< NST_ELEMENT, AD_ELEMENT >::RefineableDDConvectionProblem(), RefineableDrivenCavityProblem< ELEMENT >::RefineableDrivenCavityProblem(), RefineableFishPoissonProblem< ELEMENT >::RefineableFishPoissonProblem(), RefineableOneDAdvectionDiffusionReactionProblem< ELEMENT >::RefineableOneDAdvectionDiffusionReactionProblem(), RefineableOneDPoissonProblem< ELEMENT >::RefineableOneDPoissonProblem(), RefineablePeriodicLoadProblem< ELEMENT >::RefineablePeriodicLoadProblem(), RefineablePoissonProblem< ELEMENT >::RefineablePoissonProblem(), RefineablePorousChannelProblem< ELEMENT >::RefineablePorousChannelProblem(), oomph::RefineableQuadMeshWithMovingCylinder< ELEMENT >::RefineableQuadMeshWithMovingCylinder(), oomph::RefineableSolidCubicMesh< ELEMENT >::RefineableSolidCubicMesh(), RefineableSphereConvectionProblem< ELEMENT >::RefineableSphereConvectionProblem(), RefineableSphericalCouetteProblem< ELEMENT >::RefineableSphericalCouetteProblem(), RefineableSphericalSpinUpProblem< ELEMENT >::RefineableSphericalSpinUpProblem(), oomph::RefineableTetgenMesh< ELEMENT >::RefineableTetgenMesh(), oomph::RefineableTwoDAnnularMesh< ELEMENT >::RefineableTwoDAnnularMesh(), RefineableTwoDPoissonProblem< ELEMENT >::RefineableTwoDPoissonProblem(), RefineableUnsteadyHeatProblem< ELEMENT >::RefineableUnsteadyHeatProblem(), RefineableYoungLaplaceProblem< ELEMENT >::RefineableYoungLaplaceProblem(), oomph::TetMeshBase::region_attribute(), oomph::UnstructuredTwoDMeshGeometryBase::region_attribute(), oomph::UnstructuredTwoDMeshGeometryBase::region_element_pt(), oomph::TetMeshBase::region_element_pt(), oomph::Data::remove_copy(), DPMBase::removeDuplicatePeriodicParticles(), helpers::removeFromCommandline(), BaseHandler< T >::removeIf(), DPMBase::removeOldFiles(), SolidProblem< ELEMENT_TYPE >::removeOldFiles(), TriangleMeshWall::removeTriangle(), MandelbrotThread::render(), BaseWall::renderWall(), oomph::HSL_MA42::reorder_elements(), oomph::Mesh::reorder_nodes(), NodeReordering::reorder_nodes(), replicate(), oomph::DGFaceElement::report_info(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::reposition_spines(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::reset(), oomph::CumulativeTimings::reset(), oomph::Timer::reset(), oomph::GeneralisedElement::reset_in_external_fd(), oomph::ElementWithExternalElement::reset_in_external_interaction_field_fd(), oomph::ElementWithExternalElement::reset_in_external_interaction_geometric_fd(), oomph::GeneralisedElement::reset_in_internal_fd(), oomph::FiniteElement::reset_in_nodal_fd(), oomph::SolidFiniteElement::reset_in_solid_position_fd(), oomph::SolidICProblem::reset_original_state(), oomph::FpPressureAdvectionDiffusionProblem< ELEMENT >::reset_pin_status(), oomph::NavierStokesSchurComplementPreconditioner::reset_pin_status(), oomph::ImmersedRigidBodyTriangleMeshPolygon::reset_reference_configuration(), reshape_block(), oomph::DoubleMatrixBase::residual(), oomph::CRComplexMatrix::residual(), oomph::CCComplexMatrix::residual(), oomph::DenseComplexMatrix::residual(), oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >::residual_for_projection(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::residual_for_projection(), oomph::ProjectableElement< ELEMENT >::residual_for_projection(), oomph::HelmholtzMGPreconditioner< DIM >::residual_norm(), Eigen::Tensor< Scalar_, NumIndices_, Options_, IndexType_ >::resize(), oomph::VectorMatrix< VALUE_TYPE >::resize(), oomph::Data::resize(), oomph::Node::resize(), oomph::DenseMatrix< T >::resize(), oomph::RankThreeTensor< T >::resize(), oomph::RankFourTensor< T >::resize(), oomph::RankFiveTensor< T >::resize(), oomph::HSL_MA42::resolve(), oomph::SegregatableFSIProblem::restore_fluid_dofs(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::restore_positions(), oomph::SegregatableFSIProblem::restore_solid_dofs(), oomph::NonlinearSurfaceContactElement< ELEMENT >::resulting_contact_force(), oomph::LinearSurfaceContactElement< ELEMENT >::resulting_contact_force(), HeatedCircularPenetratorElement::resulting_force(), CircularPenetratorElement::resulting_force(), MeshTriangle::retrieveVertexParticles(), oomph::BlockPreconditioner< CRDoubleMatrix >::return_block_ordered_preconditioner_vector(), oomph::BlockPreconditioner< MATRIX >::return_block_vectors(), reverse(), Eigen::TensorEvaluator< const TensorReverseOp< ReverseDimensions, ArgType >, Device >::reverseIndex(), oomph::ChannelSpineMesh< ELEMENT >::right_element_pt(), oomph::ChannelSpineMesh< ELEMENT >::right_spine_pt(), oomph::CircularPenetrator::rigid_body_displacement(), HeatedCircularPenetratorElement::rigid_body_displacement(), RisingBubbleProblem< ELEMENT >::RisingBubbleProblem(), Eigen::TensorEvaluator< const TensorRollOp< RollDimensions, ArgType >, Device >::roll(), Eigen::TensorEvaluator< const TensorRollOp< RollDimensions, ArgType >, Device >::rollIndex(), Eigen::roots_to_monicPolynomial(), oomph::OcTree::rotate(), oomph::Rotateable< ELEMENT >::rotate(), Rotateable< ELEMENT >::rotate(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_xeq0(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_yeq0(), Quaternion::rotateInverseInertiaTensor(), RotatingProblem< ELEMENT >::RotatingProblem(), oomph::SumOfMatrices::row_map_pt(), MortaringValidationProblem< ELEMENT, NON_MORTAR_ELEMENT >::run(), benchmark_t::run(), testing::Benchmark::Run(), cast_test_impl< SrcType, DstType, RowsAtCompileTime, ColsAtCompileTime >::run(), cast_tests_impl< RowsAtCompileTime, ColsAtCompileTime, ScalarTypes >::run(), casting_test< SrcScalar, TgtScalar >::run(), check_sqrt_impl< T >::run(), check_sqrt_impl< std::complex< T > >::run(), check_rsqrt_impl< T >::run(), check_rsqrt_impl< std::complex< T > >::run(), test_cast_helper< SrcPacket, TgtPacket, SrcCoeffRatio, TgtCoeffRatio, true >::run(), packetmath_boolean_mask_ops_notcomplex_test< Scalar, Packet, std::enable_if_t< internal::packet_traits< Scalar >::HasCmp &&!internal::is_same< Scalar, bool >::value > >::run(), packetmath_minus_zero_add_test< Scalar, Packet, std::enable_if_t<!NumTraits< Scalar >::IsInteger > >::run(), DeformableFishPoissonProblem< ELEMENT >::run(), ElasticFishProblem< ELEMENT >::run(), typed_logicals_test_impl< ArrayType >::run(), Eigen::internal::is_identically_zero_impl< AutoDiffScalar< DerivativeType > >::run(), Eigen::internal::index_statically_eq_impl< DimensionList< Index, Rank > >::run(), Eigen::internal::index_statically_eq_impl< const DimensionList< Index, Rank > >::run(), Eigen::internal::index_statically_ne_impl< DimensionList< Index, Rank > >::run(), Eigen::internal::index_statically_ne_impl< const DimensionList< Index, Rank > >::run(), Eigen::internal::index_statically_gt_impl< DimensionList< Index, Rank > >::run(), Eigen::internal::index_statically_gt_impl< const DimensionList< Index, Rank > >::run(), Eigen::internal::index_statically_lt_impl< DimensionList< Index, Rank > >::run(), Eigen::internal::index_statically_lt_impl< const DimensionList< Index, Rank > >::run(), Eigen::internal::visitor_impl< Visitor, Derived, Dynamic, false, false, ShortCircuitEvaluation >::run(), Eigen::internal::visitor_impl< Visitor, Derived, Dynamic, true, false, ShortCircuitEvaluation >::run(), Eigen::internal::redux_impl< Func, Evaluator, DefaultTraversal, NoUnrolling >::run(), Eigen::internal::redux_impl< Func, Evaluator, SliceVectorizedTraversal, Unrolling >::run(), Eigen::internal::packetwise_redux_impl< Func, Evaluator, NoUnrolling >::run(), Eigen::internal::TensorExecutor< Expression, DefaultDevice, true, TiledEvaluation::Off >::run(), Eigen::internal::TensorExecutor< Expression, DefaultDevice, Vectorizable, TiledEvaluation::On >::run(), Eigen::internal::TensorExecutor< Expression, Device, Vectorizable, Tiling >::run(), Eigen::internal::householder_determinant< HCoeffs, Scalar, IsComplex >::run(), Eigen::internal::householder_determinant< HCoeffs, Scalar, false >::run(), Eigen::internal::index_known_statically_impl< IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_known_statically_impl< const IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_statically_eq_impl< IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_statically_eq_impl< const IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_statically_ne_impl< IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_statically_ne_impl< const IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_statically_gt_impl< IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_statically_gt_impl< const IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_statically_lt_impl< IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_statically_lt_impl< const IndexList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_pair_first_statically_eq_impl< IndexPairList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_pair_first_statically_eq_impl< const IndexPairList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_pair_second_statically_eq_impl< IndexPairList< FirstType, OtherTypes... > >::run(), Eigen::internal::index_pair_second_statically_eq_impl< const IndexPairList< FirstType, OtherTypes... > >::run(), Eigen::internal::ImagePatchPaddingOp< Self >::Run(), Eigen::internal::LU_kernel_bmod< SegSizeAtCompileTime >::run(), randomMatrixWithImagEivals< MatrixType, 0 >::run(), randomMatrixWithImagEivals< MatrixType, 1 >::run(), Eigen::internal::LU_kernel_bmod< 1 >::run(), Eigen::internal::StridedLinearBufferCopy< Scalar, IndexType >::Run(), Eigen::internal::DimInitializer< OutputDims >::run(), Eigen::internal::DimInitializer< Sizes<> >::run(), Eigen::internal::gemv_dense_selector< OnTheRight, RowMajor, false >::run(), Eigen::internal::sparse_solve_triangular_selector< Lhs, Rhs, Mode, Lower, RowMajor >::run(), Eigen::internal::sparse_solve_triangular_selector< Lhs, Rhs, Mode, Upper, RowMajor >::run(), Eigen::internal::sparse_solve_triangular_selector< Lhs, Rhs, Mode, Lower, ColMajor >::run(), Eigen::internal::sparse_solve_triangular_selector< Lhs, Rhs, Mode, Upper, ColMajor >::run(), Eigen::internal::sparse_solve_triangular_sparse_selector< Lhs, Rhs, Mode, UpLo, ColMajor >::run(), mapstaticmethods_impl< PlainObjectType, false, IsVector >::run(), mapstaticmethods_impl< PlainObjectType, true, false >::run(), mapstaticmethods_impl< PlainObjectType, true, true >::run(), Eigen::internal::ImagePatchCopyOp< Self, Vectorizable >::Run(), Eigen::internal::ImagePatchCopyOp< Self, true >::Run(), Eigen::TensorEvaluator< const TensorShufflingOp< Shuffle, ArgType >, Device >::PacketLoader< LoadMode, Self, ImplPacketAccess >::Run(), Eigen::TensorEvaluator< const TensorShufflingOp< Shuffle, ArgType >, Device >::PacketLoader< LoadMode, Self, true >::Run(), Eigen::internal::sparse_time_dense_product_impl< SparseLhsType, DenseRhsType, DenseResType, typename DenseResType::Scalar, RowMajor, true >::run(), Eigen::internal::sparse_time_dense_product_impl< SparseLhsType, DenseRhsType, DenseResType, typename DenseResType::Scalar, RowMajor, false >::run(), SheetGlueProblem< ELEMENT >::run(), SimpleShearProblem< ELEMENT >::run(), BlockCompressionProblem< ELEMENT >::run(), Eigen::internal::TensorBlockAssignment< Scalar, NumDims, TensorBlockExpr, IndexType >::Run(), Eigen::internal::PacketConv< SrcPacket, TargetPacket, LoadMode, ActuallyVectorize, IsSameT >::run(), Eigen::internal::PacketConv< SrcPacket, TargetPacket, LoadMode, false, true >::run(), DiskShockWaveProblem< ELEMENT, TIMESTEPPER >::run(), DiskOscillationProblem< ELEMENT >::run(), partition_action_t::run(), evaluate_defaults_action_t::run(), Eigen::internal::setIdentity_impl< Derived, true >::run(), Eigen::internal::permutation_matrix_product< ExpressionType, Side, Transposed, DenseShape >::run(), Eigen::internal::sparse_vector_assign_selector< Dest, Src, SVA_Outer >::run(), Eigen::internal::zeta_impl_series< double >::run(), Eigen::internal::Assignment< DstXprType, SrcXprType, Functor, Sparse2Dense, Weak >::run(), Eigen::internal::zeta_impl_series< float >::run(), Eigen::internal::triangular_matrix_vector_product< Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, RowMajor, Version >::run(), Eigen::internal::triangular_matrix_vector_product< Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, ColMajor, Version >::run(), Eigen::internal::product_triangular_matrix_matrix< Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, ColMajor, ResInnerStride, Version >::run(), Eigen::internal::etor_product_packet_impl< RowMajor, Dynamic, Lhs, Rhs, Packet, LoadMode >::run(), Eigen::internal::etor_product_packet_impl< ColMajor, Dynamic, Lhs, Rhs, Packet, LoadMode >::run(), Eigen::internal::general_matrix_vector_product< Index, LhsScalar, LhsMapper, RowMajor, ConjugateLhs, RhsScalar, RhsMapper, ConjugateRhs, Version >::run(), Eigen::internal::general_matrix_vector_product< Index, LhsScalar, LhsMapper, ColMajor, ConjugateLhs, RhsScalar, RhsMapper, ConjugateRhs, Version >::run(), Eigen::internal::general_matrix_matrix_product< Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, ColMajor, ResInnerStride >::run(), Eigen::internal::general_rank1_update< Scalar, Index, ColMajor, ConjLhs, ConjRhs >::run(), Eigen::internal::triangular_solve_vector< LhsScalar, RhsScalar, Index, OnTheLeft, Mode, Conjugate, RowMajor >::run(), Eigen::internal::triangular_solve_vector< LhsScalar, RhsScalar, Index, OnTheLeft, Mode, Conjugate, ColMajor >::run(), Eigen::internal::packed_triangular_matrix_vector_product< Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, ColMajor >::run(), Eigen::internal::packed_triangular_matrix_vector_product< Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, RowMajor >::run(), Eigen::internal::packed_triangular_solve_vector< LhsScalar, RhsScalar, Index, OnTheLeft, Mode, Conjugate, RowMajor >::run(), Eigen::internal::packed_triangular_solve_vector< LhsScalar, RhsScalar, Index, OnTheLeft, Mode, Conjugate, ColMajor >::run(), Eigen::internal::selfadjoint_matrix_vector_product< Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version >::run(), Eigen::internal::band_solve_triangular_selector< Index, Mode, LhsScalar, ConjLhs, RhsScalar, RowMajor >::run(), Eigen::internal::band_solve_triangular_selector< Index, Mode, LhsScalar, ConjLhs, RhsScalar, ColMajor >::run(), Eigen::internal::triangular_solve_matrix< Scalar, Index, OnTheLeft, Mode, Conjugate, TriStorageOrder, ColMajor, OtherInnerStride >::run(), Eigen::internal::packed_rank2_update_selector< Scalar, Index, UpLo >::run(), Eigen::internal::selfadjoint_packed_rank1_update< Scalar, Index, ColMajor, UpLo, ConjLhs, ConjRhs >::run(), Eigen::internal::rank2_update_selector< Scalar, Index, UpLo >::run(), Eigen::selfadjoint_rank1_update< Scalar, Index, ColMajor, UpLo, ConjLhs, ConjRhs >::run(), statistics_while_running< T >::run(), Eigen::internal::dense_assignment_loop< Kernel, LinearTraversal, NoUnrolling >::run(), Eigen::internal::triangular_assignment_loop< Kernel, Mode, Dynamic, SetOpposite >::run(), Eigen::internal::inplace_transpose_selector< MatrixType, true, true >::run(), processTriangularMatrix< MatrixType, 0 >::run(), Eigen::internal::pchebevl< Packet, N >::run(), Eigen::internal::quaternionbase_assign_impl< Other, 3, 3 >::run(), loadColData_impl< RhsMapper, linear >::run(), exp_complex_test_impl< Scalar, Packet, HasExp >::run(), Eigen::internal::selfadjoint_rank2_update_selector< Scalar, Index, UType, VType, Lower >::run(), Eigen::internal::selfadjoint_rank2_update_selector< Scalar, Index, UType, VType, Upper >::run(), Eigen::internal::TensorBlockAssignment< Scalar, NumDims, TensorBlockExpr, IndexType >::InnerDimAssign< Vectorizable, Evaluator >::Run(), Eigen::internal::TensorBlockAssignment< Scalar, NumDims, TensorBlockExpr, IndexType >::InnerDimAssign< true, Evaluator >::Run(), Eigen::internal::apply_rotation_in_the_plane_selector< Scalar, OtherScalar, SizeAtCompileTime, MinAlignment, Vectorizable >::run(), Eigen::internal::apply_rotation_in_the_plane_selector< Scalar, OtherScalar, SizeAtCompileTime, MinAlignment, true >::run(), Eigen::internal::igammac_cf_impl< Scalar, mode >::run(), Eigen::internal::igamma_series_impl< Scalar, mode >::run(), Eigen::internal::zeta_impl< Scalar >::run(), Eigen::internal::TensorPrinter< Tensor, rank, Format, EnableIf >::run(), Eigen::internal::Initializer< Derived, N >::run(), Eigen::internal::Initializer< Derived, 1 >::run(), run_and_verify(), run_bdmp_spec_1(), run_benchmarks(), run_eigen(), ShellProblem< ELEMENT >::run_it(), CompressedSquareProblem< ELEMENT >::run_it(), CantileverProblem< ELEMENT >::run_it(), PoissonProblem< ELEMENT >::run_it(), run_it(), run_matrix_tests(), NavierStokesProblem< ELEMENT >::run_natural_continuation(), run_on_cpu(), run_on_gpu_meta_kernel(), run_test(), CantileverProblem< ELEMENT >::run_tests(), run_vector_tests(), ControllerUnitTest::RungeKutta(), Eigen::ForkJoinScheduler::RunParallelForAsync(), Eigen::RunQueue< Work, kSize >::RunQueue(), Eigen::internal::rwupdt(), oomph::QElementBase::s_macro_ll(), oomph::QElementBase::s_macro_ur(), saveAsBitmap(), Eigen::saveMarketDense(), SolidProblem< ELEMENT_TYPE >::saveSolidMesh(), Membrane::saveVertexPositions(), CSCWalls::saveWalls(), oomph::TLinearHeatAndElasticityElement< DIM, NNODE_1D >::scalar_name_paraview(), oomph::MultiPoissonEquations< DIM, NFIELDS >::scalar_name_paraview(), RefineableBuoyantQCrouzeixRaviartElement< DIM >::scalar_name_paraview(), oomph::RefineableBuoyantQAxisymCrouzeixRaviartElement::scalar_name_paraview(), oomph::AxisymmetricQAdvectionCrouzeixRaviartElement::scalar_name_paraview(), oomph::AdvectionDiffusionEquations< DIM >::scalar_name_paraview(), oomph::AxisymAdvectionDiffusionEquations::scalar_name_paraview(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::scalar_name_paraview(), oomph::AxisymmetricNavierStokesEquations::scalar_name_paraview(), oomph::AxisymmetricPoroelasticityEquations::scalar_name_paraview(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::scalar_name_paraview(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::scalar_name_paraview(), oomph::FiniteElement::scalar_name_paraview(), oomph::HelmholtzEquations< DIM >::scalar_name_paraview(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::scalar_name_paraview(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::scalar_name_paraview(), oomph::NavierStokesEquations< DIM >::scalar_name_paraview(), oomph::VorticitySmootherElement< ELEMENT >::scalar_name_paraview(), oomph::PMLHelmholtzEquations< DIM >::scalar_name_paraview(), oomph::PoissonEquations< DIM >::scalar_name_paraview(), oomph::SpaceTimeNavierStokesEquations< DIM >::scalar_name_paraview(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::scalar_name_paraview(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::scalar_name_paraview(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::scalar_name_paraview(), oomph::YoungLaplaceEquations::scalar_product(), oomph::YoungLaplaceEquations::scalar_times_vector(), oomph::NavierStokesEquations< DIM >::scalar_value_fct_paraview(), oomph::SpaceTimeNavierStokesEquations< DIM >::scalar_value_fct_paraview(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::scalar_value_fct_paraview(), oomph::PMLHelmholtzEquations< DIM >::scalar_value_fct_paraview(), oomph::PoissonEquations< DIM >::scalar_value_fct_paraview(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::scalar_value_fct_paraview(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::scalar_value_fct_paraview(), oomph::MultiPoissonEquations< DIM, NFIELDS >::scalar_value_paraview(), oomph::AxisymmetricQAdvectionCrouzeixRaviartElement::scalar_value_paraview(), oomph::AdvectionDiffusionEquations< DIM >::scalar_value_paraview(), oomph::AxisymAdvectionDiffusionEquations::scalar_value_paraview(), oomph::AxisymmetricNavierStokesEquations::scalar_value_paraview(), oomph::AxisymmetricPoroelasticityEquations::scalar_value_paraview(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::scalar_value_paraview(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::scalar_value_paraview(), oomph::HelmholtzEquations< DIM >::scalar_value_paraview(), oomph::NavierStokesEquations< DIM >::scalar_value_paraview(), oomph::VorticitySmootherElement< ELEMENT >::scalar_value_paraview(), oomph::PMLHelmholtzEquations< DIM >::scalar_value_paraview(), oomph::PoissonEquations< DIM >::scalar_value_paraview(), oomph::SpaceTimeNavierStokesEquations< DIM >::scalar_value_paraview(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::scalar_value_paraview(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::scalar_value_paraview(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::scalar_value_paraview(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::scalar_value_paraview(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::scale_basis(), oomph::TRaviartThomasDarcyElement< ORDER >::scale_basis(), oomph::TPoroelasticityElement< ORDER >::scale_basis(), Eigen::internal::gemm_class< Scalar, is_unit_inc >::scale_load_c(), oomph::Mesh::scale_mesh(), Eigen::internal::generic_product_impl< MatrixReplacement, Rhs, SparseShape, DenseShape, GemvProduct >::scaleAndAddTo(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::scatterPacket(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::scatterPacket(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::scramble_FFT(), oomph::SecondInvariantHelper::second_invariant(), PerturbationSolution::second_order_perturbation_for_plot(), Eigen::BDCSVD< MatrixType_, Options_ >::secularEq(), RNG::seedLaggedFibonacciGenerator(), oomph::MyProblem::segregated_pin_indices(), SegregatedFSICollapsibleChannelProblem< ELEMENT >::SegregatedFSICollapsibleChannelProblem(), SegregatedFSIDrivenCavityProblem< ELEMENT >::SegregatedFSIDrivenCavityProblem(), Eigen::PolynomialSolverBase< Scalar_, Deg_ >::selectComplexRoot_withRespectToNorm(), Eigen::PolynomialSolverBase< Scalar_, Deg_ >::selectRealRoot_withRespectToAbsRealPart(), Eigen::PolynomialSolverBase< Scalar_, Deg_ >::selectRealRoot_withRespectToRealPart(), oomph::AlgebraicNode::self_test(), oomph::BinaryTree::self_test(), oomph::BinaryTreeForest::self_test(), oomph::GeneralisedElement::self_test(), oomph::FiniteElement::self_test(), oomph::Mesh::self_test(), oomph::Data::self_test(), oomph::OcTree::self_test(), oomph::OcTreeForest::self_test(), oomph::QuadTree::self_test(), oomph::QuadTreeForest::self_test(), oomph::SelfStartingBDF2::SelfStartingBDF2(), Eigen::IndexList< FirstType, OtherTypes >::set(), Eigen::IndexPairList< FirstType, OtherTypes >::set(), Eigen::internal::tuple_coeff< Idx, ValueT >::set(), Eigen::internal::tuple_coeff< 0, ValueT >::set(), NurbsSurface::set(), TriangulatedWall::set(), WearableNurbsWall::set(), BaseStateProblem< BASE_ELEMENT >::set_boundary_conditions(), RotatingProblem< ELEMENT >::set_boundary_conditions(), FlowAroundCylinderProblem< ELEMENT >::set_boundary_conditions(), RefineablePorousChannelProblem< ELEMENT >::set_boundary_conditions(), UnstructuredFluidProblem< ELEMENT >::set_boundary_conditions(), RefineableSphereConvectionProblem< ELEMENT >::set_boundary_conditions(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::set_boundary_shape_geom_object_pt(), AxiPoroProblem< ELEMENT, TIMESTEPPER >::set_boundary_values(), ChutePeriodic::set_chute_parameters(), VariableBottom::set_chute_parameters(), oomph::ContinuationStorageScheme::set_consistent_pinned_positions(), oomph::SpineMesh::set_consistent_pinned_spine_values_for_continuation(), oomph::ContinuationStorageScheme::set_consistent_pinned_values(), oomph::Problem::set_consistent_pinned_values_for_continuation(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::set_coordinate_for_projection(), oomph::BoundaryNodeBase::set_coordinates_on_boundary(), internal::Colamd::set_defaults(), oomph::Problem::set_dofs(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::set_dofs_for_element(), FSIRingProblem::set_fluid_initial_condition(), Eigen::internal::set_from_triplets(), Eigen::internal::set_from_triplets_sorted(), oomph::PerturbedSpine::set_geom_data_pt(), oomph::Spine::set_geom_data_pt(), oomph::PerturbedSpine::set_geom_object_pt(), oomph::Spine::set_geom_object_pt(), oomph::Node::set_hanging_pt(), BaseStateProblem< BASE_ELEMENT >::set_initial_condition(), PerturbedStateProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::set_initial_condition(), InterfaceProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), RotatingCylinderProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), TorusProblem< ELEMENT >::set_initial_condition(), UnstructuredTorusProblem< ELEMENT >::set_initial_condition(), UnsteadyHeatProblem< ELEMENT >::set_initial_condition(), OscRingNStProblem< ELEMENT >::set_initial_condition(), PseudoElasticCollapsibleChannelProblem< FLUID_ELEMENT, SOLID_ELEMENT >::set_initial_condition(), RefineableUnsteadyHeatProblem< ELEMENT >::set_initial_condition(), OscEllipseProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), RayleighProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), RayleighTractionProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), TwoLayerInterfaceProblem< ELEMENT >::set_initial_condition(), RefineableSphericalSpinUpProblem< ELEMENT >::set_initial_condition(), AdvectionProblem::set_initial_conditions(), EulerProblem::set_initial_conditions(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::set_lagrangian_coordinate_for_projection(), oomph::QElementBase::set_macro_elem_pt(), oomph::HangInfo::set_master_node_pt(), oomph::BlockPreconditioner< MATRIX >::set_mesh(), oomph::FiniteElement::set_n_node(), oomph::SolidICProblem::set_newmark_initial_condition_consistently(), oomph::MacroElementNodeUpdateElement< ELEMENT >::set_node_update_info(), oomph::SurfaceContactElementBase< ELEMENT >::set_penetrator_pt(), oomph::Problem::set_pinned_values_to_zero(), oomph::TriangleMeshCurve::set_polyline_refinement_tolerance(), oomph::TriangleMeshCurve::set_polyline_unrefinement_tolerance(), oomph::HermiteQuadMesh< ELEMENT >::set_position_of_boundary_node(), oomph::HermiteQuadMesh< ELEMENT >::set_position_of_node(), SolidFreeSurfaceRotationProblem< ELEMENT >::set_positions_from_lagrangian_coordinates(), oomph::KirchhoffLoveShellEquations::set_prestress_pt(), oomph::MGSolver< DIM >::set_restriction_matrices_as_interpolation_transposes(), oomph::HelmholtzMGPreconditioner< DIM >::set_restriction_matrices_as_interpolation_transposes(), oomph::MGSolver< DIM >::set_self_test_vector(), RefineableFishPoissonProblem< ELEMENT >::set_shape_deriv_method(), oomph::BiharmonicProblem< DIM >::set_source_function(), oomph::SpineMesh::set_spine_time_stepper(), oomph::GeneralPurposeBlockPreconditioner< MATRIX >::set_subsidiary_preconditioner_pt(), oomph::TriangleMeshParameters::set_target_area_for_region(), oomph::Data::set_time_stepper(), oomph::Problem::set_timestepper_for_all_data(), oomph::PeriodicOrbitEquations::set_timestepper_weights(), CantileverProblem< ELEMENT >::set_traction_pt(), GlobalParameters::set_up_dof_to_block_mapping(), StabilityProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::set_up_periodic_base_flow(), oomph::Data::set_value(), oomph::GeneralElasticityTensor::set_value(), oomph::VolumeConstraintBoundingElement::set_volume_constraint_element(), oomph::BDF< NSTEPS >::set_weights(), oomph::NewmarkBDF< NSTEPS >::set_weights(), oomph::Steady< NSTEPS >::set_weights(), Anasazi::MultiVecTraits< double, oomph::DoubleMultiVector >::SetBlock(), Domain::setBounds(), HGrid::setBucketIsChecked(), SolidProblem< ELEMENT_TYPE >::setDissipation(), PSD::setDistributionLogNormal(), PSD::setDistributionNormal(), PSD::setDistributionPhiNormal(), PSD::setDistributionUniform(), CGFields::StandardFieldsBinning::setFields(), HGrid::setFirstBaseParticleInBucket(), DPMBase::setFixedParticles(), Eigen::PermutationBase< Derived >::setIdentity(), Eigen::TranspositionsBase< Derived >::setIdentity(), setinnerrand_eigen(), ParticleSpecies::setMaxInteractionDistance(), InsertionBoundary::setParticleToCopy(), Calibration::setPSD(), Material::setPSD(), PSD::setPSDFromCSV(), BaseCluster::setRadii(), setrand_eigen_compact(), setrand_eigen_dynamic(), setrand_eigen_gnu_hash(), setrand_eigen_google_dense(), setrand_eigen_google_sparse(), setrand_eigen_sumeq(), setrand_ublas_genvec(), setrand_ublas_mapped(), LevelSetWall::setShapeCube(), LevelSetWall::setShapeCylinder(), LevelSetWall::setShapeDiamond(), LevelSetWall::setShapeFourSided(), LevelSetWall::setShapeSphere(), Eigen::ThreadPoolTempl< Environment >::SetStealPartition(), Eigen::ThreadPoolTempl< Environment >::SetStealPartitions(), DPMBase::setTime(), Eigen::MatrixBase< Derived >::setUnit(), oomph::Diagonal< MATRIX >::setup(), oomph::SimpleTwoDofOnly< MATRIX >::setup(), oomph::UpperTriangular< MATRIX >::setup(), oomph::TwoPlusThreeUpperTriangularWithReplace< MATRIX >::setup(), oomph::CoarseTwoPlusTwoPlusOne< MATRIX >::setup(), oomph::OnePlusFourWithTwoCoarse< MATRIX >::setup(), oomph::SimpleBlockDiagonalPreconditioner< MATRIX >::setup(), BoussinesqPreconditioner::setup(), oomph::BlockDiagonalPreconditioner< MATRIX >::setup(), oomph::BlockTriangularPreconditioner< MATRIX >::setup(), oomph::MatrixBasedLumpedPreconditioner< MATRIX >::setup(), oomph::MatrixBasedDiagPreconditioner::setup(), oomph::ILUZeroPreconditioner< CCDoubleMatrix >::setup(), oomph::ILUZeroPreconditioner< CRDoubleMatrix >::setup(), oomph::FSIPreconditioner::setup(), oomph::SimpleFSIPreconditioner< MATRIX >::setup(), oomph::PseudoElasticFSIPreconditioner::setup(), oomph::PseudoElasticPreconditioner::setup(), oomph::PseudoElasticPreconditionerOld::setup(), oomph::PseudoElasticPreconditionerSubsidiaryPreconditionerOld::setup(), oomph::NavierStokesSchurComplementPreconditioner::setup(), oomph::PressureBasedSolidLSCPreconditioner::setup(), oomph::ExactDGPBlockPreconditioner< MATRIX >::setup(), oomph::BandedBlockTriangularPreconditioner< MATRIX >::setup(), oomph::SpaceTimeNavierStokesSubsidiaryPreconditioner::setup(), oomph::GMRESBlockPreconditioner::setup(), oomph::LineVisualiser::setup(), oomph::AlgebraicCylinderWithFlagMesh< ELEMENT >::setup_algebraic_node_update(), oomph::AlgebraicElementBase::setup_algebraic_node_update(), SimpleShearProblem< ELEMENT >::setup_boundary_conditions(), oomph::XdaTetMesh< ELEMENT >::setup_boundary_coordinates(), oomph::UnstructuredTwoDMeshGeometryBase::setup_boundary_coordinates(), oomph::BrickMeshBase::setup_boundary_element_info(), oomph::QuadMeshBase::setup_boundary_element_info(), oomph::TetMeshBase::setup_boundary_element_info(), oomph::TriangleMeshBase::setup_boundary_element_info(), oomph::HermiteQuadMesh< ELEMENT >::setup_boundary_element_info(), oomph::Multi_domain_functions::setup_bulk_elements_adjacent_to_face_mesh(), oomph::HelmholtzMGPreconditioner< DIM >::setup_coarsest_level_structures(), MortaringHelpers::setup_constraint_elements_at_nodes(), oomph::RefineableQElement< 3 >::setup_father_bounds(), oomph::LineVisualiser::setup_from_file(), oomph::FourierDecomposedHelmholtzDtNMesh< ELEMENT >::setup_gamma(), oomph::HelmholtzDtNMesh< ELEMENT >::setup_gamma(), oomph::MGSolver< DIM >::setup_interpolation_matrices(), oomph::HelmholtzMGPreconditioner< DIM >::setup_interpolation_matrices(), RefineableDrivenCavityProblem< ELEMENT >::setup_line_plot_points(), RectangularDrivenCavityProblem< ELEMENT >::setup_line_plot_points(), oomph::MacroElementNodeUpdateRefineableQuarterCircleSectorMesh< ELEMENT >::setup_macro_element_node_update(), oomph::MacroElementNodeUpdateRefineableQuarterTubeMesh< ELEMENT >::setup_macro_element_node_update(), oomph::MGSolver< DIM >::setup_mg_structures(), oomph::HelmholtzMGPreconditioner< DIM >::setup_mg_structures(), SamplePointContainer::setup_min_and_max_coordinates(), oomph::Multi_domain_functions::setup_multi_domain_interaction(), oomph::DGFaceElement::setup_neighbour_info(), oomph::RefineableBrickMesh< ELEMENT >::setup_octree_forest(), oomph::SolidICProblem::setup_problem(), oomph::RefineableQuadMesh< ELEMENT >::setup_quadtree_forest(), oomph::SegregatableFSIProblem::setup_segregated_solver(), oomph::MGSolver< DIM >::setup_smoothers(), oomph::HelmholtzMGPreconditioner< DIM >::setup_smoothers(), oomph::OcTree::setup_static_data(), oomph::StefanBoltzmannHelper::setup_stefan_boltzmann_visibility(), ElasticRefineableTwoLayerMesh< ELEMENT >::setup_upper_and_lower_elements(), ClosedCSCWalls::setupInitialConditions(), CSCInit::setupInitialConditions(), CSCWalls::setupInitialConditions(), SmoothChute::setupInitialConditions(), ChangingTOIParticle::setupInitialConditions(), MembraneDemo::setupInitialConditions(), Binary::setupInitialConditions(), my_problem::setupInitialConditions(), Chain::setupInitialConditions(), CubicCell::setupInitialConditions(), FreeCooling2DinWallsDemo::setupInitialConditions(), FreeCooling3DDemoProblem::setupInitialConditions(), FreeCooling3DinWallsDemo::setupInitialConditions(), FreeCoolingDemoProblem::setupInitialConditions(), HeaterBoundaryTest::setupInitialConditions(), MinimalExampleDrum::setupInitialConditions(), Cstatic2d::setupInitialConditions(), AngleOfRepose::setupInitialConditions(), SilbertPeriodic::setupInitialConditions(), MeltableForceLawSelfTest::setupInitialConditions(), ThermalConductionSelfTest::setupInitialConditions(), Chutebelt::setupInitialConditions(), PSDSelfTest::setupInitialConditions(), CGHandlerSelfTest::setupInitialConditions(), NewtonsCradleSelftest::setupInitialConditions(), SquarePacking::setupInitialConditions(), DPM::setupInitialConditions(), ChargedBondedParticleUnitTest::setupInitialConditions(), my_problem_HGRID::setupInitialConditions(), HertzianBSHPInteractionTwoParticleElasticCollision::setupInitialConditions(), TwoBondedParticleElasticCollision::setupInitialConditions(), CoilSelfTest::setupInitialConditions(), GetDistanceAndNormalForTriangleWalls::setupInitialConditions(), TriangulatedScrewSelfTest::setupInitialConditions(), TriangulatedWallSelfTest::setupInitialConditions(), ScalingTestInitialConditionsRelax::setupInitialConditions(), ScalingTestRun::setupInitialConditions(), Contact::setupInitialConditions(), GranularCollapse::setupInitialConditions(), Packing::setupInitialConditions(), MD_demo::setupInitialConditions(), MpiMaserChuteTest::setupInitialConditions(), MultiParticlesInsertion::setupInitialConditions(), MpiPeriodicBoundaryUnitTest::setupInitialConditions(), ScaleCoupledBeam::setupMercury(), MeshTriangle::setVertexIds(), Eigen::internal::AmbiVector< Scalar_, StorageIndex_ >::setZero(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::shape(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::shape(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::shape(), oomph::QElement< 1, NNODE_1D >::shape(), oomph::QElement< 2, NNODE_1D >::shape(), oomph::QElement< 3, NNODE_1D >::shape(), oomph::QSpectralElement< 1, NNODE_1D >::shape(), oomph::QSpectralElement< 2, NNODE_1D >::shape(), oomph::QSpectralElement< 3, NNODE_1D >::shape(), oomph::ClampedHermiteShellBoundaryConditionElement::shape(), oomph::UnsteadyHeatBaseFaceElement< ELEMENT >::shape_and_test(), oomph::HeatedPenetratorFluxElement< ELEMENT >::shape_and_test(), oomph::UnsteadyHeatFluxPseudoMeltElement< ELEMENT >::shape_and_test(), oomph::AdvectionDiffusionFluxElement< ELEMENT >::shape_and_test(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::shape_and_test(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::shape_and_test(), oomph::FourierDecomposedHelmholtzBCElementBase< ELEMENT >::shape_and_test(), oomph::FourierDecomposedHelmholtzFluxElement< ELEMENT >::shape_and_test(), oomph::HelmholtzFluxElement< ELEMENT >::shape_and_test(), oomph::LinearWaveFluxElement< ELEMENT >::shape_and_test(), oomph::FourierDecomposedHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test(), oomph::HelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test(), oomph::PMLHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test(), oomph::PMLFourierDecomposedHelmholtzFluxElement< ELEMENT >::shape_and_test(), oomph::PMLFourierDecomposedHelmholtzPowerMonitorElement< ELEMENT >::shape_and_test(), oomph::PMLHelmholtzFluxElement< ELEMENT >::shape_and_test(), oomph::PoissonFluxElement< ELEMENT >::shape_and_test(), oomph::SphericalAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test(), oomph::SteadyAxisymAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test(), oomph::UnsteadyHeatFluxElement< ELEMENT >::shape_and_test(), oomph::PolarStreamfunctionTractionElement< ELEMENT >::shape_and_test_at_knot(), oomph::NavierStokesFluxControlElement< ELEMENT >::shape_and_test_at_knot(), oomph::AdvectionDiffusionFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::LinearisedFSIAxisymmetricNStNoSlipBCElementElement< FLUID_BULK_ELEMENT, SOLID_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::FourierDecomposedHelmholtzFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::HelmholtzFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::FourierDecomposedHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::HelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::PMLHelmholtzFluxFromNormalDisplacementBCElement< HELMHOLTZ_BULK_ELEMENT, ELASTICITY_BULK_ELEMENT >::shape_and_test_at_knot(), oomph::NavierStokesTractionElement< ELEMENT >::shape_and_test_at_knot(), oomph::PMLFourierDecomposedHelmholtzFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::PMLHelmholtzFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::PoissonFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::PolarNavierStokesTractionElement< ELEMENT >::shape_and_test_at_knot(), oomph::PolarStressIntegralElement< ELEMENT >::shape_and_test_at_knot(), oomph::NavierStokesSpaceTimeTractionElement< ELEMENT >::shape_and_test_at_knot(), oomph::NavierStokesMixedOrderSpaceTimeTractionElement< ELEMENT >::shape_and_test_at_knot(), oomph::SphericalAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::SteadyAxisymAdvectionDiffusionFluxElement< ELEMENT >::shape_and_test_at_knot(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::shape_and_test_at_knot(), oomph::FiniteElement::shape_at_knot(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local_at_knot(), oomph::TPoroelasticityElement< ORDER >::shape_basis_test_local_at_knot(), oomph::TRaviartThomasDarcyElement< ORDER >::shape_basis_test_local_at_knot(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::shape_u_nst(), oomph::QUnsteadyHeatMixedOrderSpaceTimeElement< SPATIAL_DIM, NNODE_1D >::shape_ust_heat(), oomph::ShapeWithDeepCopy::ShapeWithDeepCopy(), SheetGlueProblem< ELEMENT >::SheetGlueProblem(), ShellMesh< ELEMENT >::ShellMesh(), ShellProblem< ELEMENT >::ShellProblem(), oomph::Time::shift_dt(), oomph::SelfStartingBDF2::shift_time_positions(), oomph::IMRBase::shift_time_positions(), oomph::Steady< NSTEPS >::shift_time_positions(), oomph::Newmark< NSTEPS >::shift_time_positions(), oomph::NewmarkBDF< NSTEPS >::shift_time_positions(), oomph::BDF< NSTEPS >::shift_time_positions(), oomph::WomersleyImpedanceTubeBase< ELEMENT, DIM >::shift_time_values(), oomph::Newmark< 2 >::shift_time_values(), oomph::NewmarkBDF< NSTEPS >::shift_time_values(), AngledPeriodicBoundary::shiftPosition(), testing::Benchmark::ShouldRun(), Siegen::Siegen(), signbit_test(), oomph::SimpleCubicScaffoldTetMesh::SimpleCubicScaffoldTetMesh(), oomph::SimpleRectangularQuadMesh< ELEMENT >::SimpleRectangularQuadMesh(), oomph::SimpleRectangularTriMesh< ELEMENT >::SimpleRectangularTriMesh(), SimpleRefineableFishPoissonProblem< ELEMENT >::SimpleRefineableFishPoissonProblem(), SimpleShearProblem< ELEMENT >::SimpleShearProblem(), SimpleSpineMesh< ELEMENT >::SimpleSpineMesh(), mathsFunc::sin(), PoissonElementWithSingularity< BASIC_POISSON_ELEMENT >::singular_function(), SinusoidalWall::SinusoidalWall(), SkewedInnerBlock(), oomph::DGElement::slope_limit(), SmallMatrix< numberOfRows, numberOfColumns >::SmallMatrix(), oomph::RefineableTetgenMesh< ELEMENT >::snap_nodes_onto_boundary(), oomph::TetMeshBase::snap_nodes_onto_geometric_objects(), oomph::UnstructuredTwoDMeshGeometryBase::snap_nodes_onto_geometric_objects(), RisingBubbleProblem< ELEMENT >::snap_onto_sphere(), oomph::TetMeshBase::snap_to_quadratic_surface(), oomph::SolarRadiationBase::SolarRadiationBase(), oomph::AxisymmetricPoroelasticityEquations::solid_body_force(), oomph::NodeNodeConstraintElement::solid_node_pt(), oomph::AxisymQPVDElementWithPressure::solid_p_local_eqn(), oomph::QPVDElementWithPressure< DIM >::solid_p_local_eqn(), oomph::QPVDElementWithContinuousPressure< DIM >::solid_p_local_eqn(), oomph::TPVDElementWithContinuousPressure< DIM >::solid_p_local_eqn(), oomph::QPVDElementWithContinuousPressure< DIM >::solid_pshape(), oomph::AxisymmetricPVDEquationsWithPressure::solid_pshape_at_knot(), oomph::PVDEquationsWithPressure< DIM >::solid_pshape_at_knot(), SolidFreeSurfaceRotationProblem< ELEMENT >::SolidFreeSurfaceRotationProblem(), oomph::SolidMesh::SolidMesh(), BratuProblem< ELEMENT >::solve(), PredPreyProblem< ELEMENT >::solve(), ABCProblem< ELEMENT, TIMESTEPPERT >::solve(), ContinuationProblem::solve(), RefineableRotatingCylinderProblem< ELEMENT >::solve(), ComplexHarmonicProblem< ELEMENT, EIGEN_SOLVER >::solve(), HarmonicProblem< ELEMENT, EIGEN_SOLVER >::solve(), oomph::BlockHopfLinearSolver::solve(), oomph::HSL_MA42::solve(), oomph::HelmholtzGMRESMG< MATRIX >::solve(), oomph::HelmholtzFGMRESMG< MATRIX >::solve(), ShellProblem< ELEMENT >::solve(), oomph::Problem::solve_eigenproblem(), oomph::ARPACK::solve_eigenproblem(), oomph::LAPACK_QZ::solve_eigenproblem(), oomph::ANASAZI::solve_eigenproblem(), oomph::BlockHopfLinearSolver::solve_for_two_rhs(), oomph::CG< MATRIX >::solve_helper(), oomph::BiCGStab< MATRIX >::solve_helper(), oomph::GS< MATRIX >::solve_helper(), oomph::GS< CRDoubleMatrix >::solve_helper(), oomph::DampedJacobi< MATRIX >::solve_helper(), oomph::GMRES< MATRIX >::solve_helper(), oomph::AugmentedProblemGMRES::solve_helper(), oomph::HelmholtzGMRESMG< MATRIX >::solve_helper(), oomph::HelmholtzFGMRESMG< MATRIX >::solve_helper(), RotatingProblem< ELEMENT >::solve_system(), CapProblem< ELEMENT >::solve_system(), UnstructuredTorusProblem< ELEMENT >::solve_system(), Eigen::internal::MappedSuperNodalMatrix< Scalar_, StorageIndex_ >::solveInPlace(), Eigen::internal::MappedSuperNodalMatrix< Scalar_, StorageIndex_ >::solveTransposedInPlace(), oomph::CRDoubleMatrix::sort_entries(), Eigen::ComplexEigenSolver< MatrixType_ >::sortEigenvalues(), oomph::DarcyEquations< DIM >::source(), TanhSolnForMultiPoisson::source_function(), CGCoordinates::spaceEvenly(), ABCElement::spacetime_output(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_lists(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_maps(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_two_arrays(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_two_vectors(), oomph::Problem::sparse_assemble_row_or_column_compressed_with_vectors_of_pairs(), sparse_basic(), sparse_block(), sparse_extra(), oomph::DenseMatrix< T >::sparse_indexed_output_helper(), oomph::CRMatrix< T >::sparse_indexed_output_helper(), oomph::SumOfMatrices::sparse_indexed_output_helper(), oomph::CRDoubleMatrix::sparse_indexed_output_with_offset(), Eigen::internal::sparse_selfadjoint_time_dense_product(), Eigen::internal::sparse_sparse_to_dense_product_impl(), sparse_vector(), oomph::SparseMatrix< T, MATRIX_TYPE >::SparseMatrix(), oomph::SpectralElement::spectral_data_pt(), SphericalSpinUpProblem< ELEMENT >::SphericalSpinUpProblem(), SphericalSteadyRotationProblem< ELEMENT >::SphericalSteadyRotationProblem(), SpikedChannelSpineFlowProblem< ELEMENT >::SpikedChannelSpineFlowProblem(), SpikedLine::SpikedLine(), oomph::Spine::Spine(), oomph::PerturbedSpineElement< ELEMENT >::spine_local_eqn(), oomph::SpineMesh::spine_pt(), oomph::SpineAxisymmetricMarangoniSurfactantFluidInterfaceElement< ELEMENT >::SpineAxisymmetricMarangoniSurfactantFluidInterfaceElement(), SpineInclinedPlaneMesh< ELEMENT >::SpineInclinedPlaneMesh(), oomph::SpineLineMarangoniSurfactantFluidInterfaceElement< ELEMENT >::SpineLineMarangoniSurfactantFluidInterfaceElement(), oomph::SpineUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::SpineUpdateFluidInterfaceElement(), oomph::DoubleVectorHelpers::split(), oomph::RefineableElement::split(), oomph::TetMeshBase::split_elements_in_corners(), oomph::Tree::split_if_required(), oomph::DoubleVectorHelpers::split_without_communication(), Eigen::RealQZ< MatrixType_ >::splitOffTwoRows(), Global_Physical_Variables::spring_load(), Global_Physical_Variables::spring_load_lower(), PoissonProblem< ELEMENT >::square_domain(), oomph::MyAxisymmetricFluidElement< ELEMENT >::square_of_l2_norm(), square_of_l2_norm(), oomph::MyTaylorHoodElement< DIM >::square_of_l2_norm(), oomph::MyCrouzeixRaviartElement::square_of_l2_norm(), oomph::ImposeDisplacementByLagrangeMultiplierElement< ELEMENT >::square_of_l2_norm_of_error(), square_of_norm_of_fixed_point(), square_of_norm_of_strain_invariant(), square_of_norm_of_viscosity(), Eigen::TensorEvaluator< const TensorSlicingOp< StartIndices, Sizes, ArgType >, Device >::srcCoeff(), Eigen::TensorEvaluator< const TensorStridingSlicingOp< StartIndices, StopIndices, Strides, ArgType >, Device >::srcCoeff(), Eigen::TensorEvaluator< const TensorShufflingOp< Shuffle, ArgType >, Device >::srcCoeff(), Eigen::TensorEvaluator< const TensorStridingOp< Strides, ArgType >, Device >::srcCoeff(), stable_norm(), Eigen::internal::stable_norm_impl_inner_step(), oomph::CumulativeTimings::start(), oomph::Timer::start(), StaticDiskCompressionProblem< ELEMENT >::StaticDiskCompressionProblem(), Statistics(), statistics_while_running< T >::statistics_while_running(), oomph::Problem::steady_newton_solve(), MeltSpinningProblem< ELEMENT >::steady_run(), SegregatedFSICollapsibleChannelProblem< ELEMENT >::steady_run(), AxisymFreeSurfaceNozzleAdvDiffRobinProblem< ELEMENT >::steady_run(), oomph::SegregatableFSIProblem::steady_segregated_solve(), SteadyCurvedTubeProblem< ELEMENT >::SteadyCurvedTubeProblem(), SteadyHelicalProblem< ELEMENT >::SteadyHelicalProblem(), SteadyTubeProblem< ELEMENT >::SteadyTubeProblem(), Eigen::ThreadPoolTempl< Environment >::Steal(), oomph::Tree::stick_all_tree_nodes_into_vector(), oomph::TreeForest::stick_all_tree_nodes_into_vector(), oomph::Tree::stick_leaves_into_vector(), oomph::TreeForest::stick_leaves_into_vector(), oomph::QuadTree::stick_neighbouring_leaves_into_vector(), STLReader::STLReader(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::storePacketBlock_helper< SubPacket, Scalar_, n, idx >::store(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::storePacketBlock_helper< SubPacket, std::complex< float >, n, idx >::store(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::storePacketBlock_helper< SubPacket, std::complex< double >, n, idx >::store(), Eigen::internal::PacketBlockManagement< Index, Scalar, Packet, n, idx, StorageOrder >::store(), Eigen::internal::PacketBlockManagement< Index, Scalar, Packet, n, idx, RowMajor >::store(), Eigen::internal::PacketBlockManagement< Index, Scalar, Packet, n, -1, StorageOrder >::store(), Eigen::internal::PacketBlockManagement< Index, Scalar, Packet, n, -1, RowMajor >::store(), oomph::Problem::store_current_dof_values(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::store_positions(), oomph::SegregatableFSIProblem::store_solid_dofs(), Eigen::internal::storeAccumulator(), Eigen::internal::storeComplexAccumulator(), oomph::VorticitySmootherElement< ELEMENT >::stored_dof_to_recoverable_dof(), Eigen::internal::TensorContractionSubMapper< Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_ >::storePacket(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType >::storePacket(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType, Incr >::storePacket(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::storePacket(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::storePacket(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::storePacketBlock(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::storePacketBlock(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType >::storePacketPartial(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType, Incr >::storePacketPartial(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::storePacketPartial(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::storePacketPartial(), oomph::LinearisedAxisymmetricNavierStokesEquations::strain_rate(), oomph::AxisymmetricNavierStokesEquations::strain_rate(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::strain_rate(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::strain_rate(), oomph::PolarNavierStokesEquations::strain_rate(), oomph::SpaceTimeNavierStokesEquations< DIM >::strain_rate(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::strain_rate(), oomph::SphericalNavierStokesEquations::strain_rate(), oomph::LinearisedNavierStokesEquations::strain_rate(), oomph::PolarNavierStokesEquations::strain_rate_by_r(), oomph::StreamfunctionProblem::StreamfunctionProblem(), FlowFrontChute::stretch(), Eigen::internal::strides(), oomph::Global_string_for_annotation::string(), strtolower(), strtoupper(), Eigen::ComplexSchur< MatrixType_ >::subdiagonalEntryIsNeglegible(), oomph::GeneralPurposeBlockPreconditioner< MATRIX >::subsidiary_preconditioner_pt(), oomph::DoubleVectorWithHaloEntries::sum_all_halo_and_haloed_values(), SUPGAdvectionDiffusionProblem< ELEMENT >::SUPGAdvectionDiffusionProblem(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::SurfactantProblem(), svd_fill_random(), swapBytes(), Eigen::internal::symm_pack_complex_lhs_helper(), Eigen::internal::symm_pack_complex_rhs_helper(), Eigen::internal::symm_pack_lhs_helper(), Eigen::internal::symm_pack_rhs_helper(), RefineablePorousChannelProblem< ELEMENT >::symmetrise_eigenfunction_for_adaptive_pitchfork_tracking(), oomph::DoubleVectorWithHaloEntries::synchronise(), oomph::TElement< 2, NNODE_1D >::tecplot_zone_string(), oomph::BDF< NSTEPS >::temporal_error_in_position(), oomph::TR::temporal_error_in_position(), oomph::SelfStartingBDF2::temporal_error_in_position_bdf2(), oomph::IMRBase::temporal_error_in_value(), oomph::BDF< NSTEPS >::temporal_error_in_value(), oomph::TR::temporal_error_in_value(), oomph::SelfStartingBDF2::temporal_error_in_value_bdf2(), Eigen::internal::tensor_static_symgroup_index_permute(), Eigen::TensorContractionEvaluatorBase< Derived >::TensorContractionEvaluatorBase(), Eigen::TensorEvaluator< const TensorBroadcastingOp< Broadcast, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorChippingOp< DimId, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorConcatenationOp< Axis, LeftArgType, RightArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorConvolutionOp< Indices, InputArgType, KernelArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorGeneratorOp< Generator, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorImagePatchOp< Rows, Cols, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorInflationOp< Strides, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorLayoutSwapOp< ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorSlicingOp< StartIndices, Sizes, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorStridingSlicingOp< StartIndices, StopIndices, Strides, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorPaddingOp< PaddingDimensions, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorPatchOp< PatchDim, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorReverseOp< ReverseDimensions, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorRollOp< RollDimensions, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorScanOp< Op, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorShufflingOp< Shuffle, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorStridingOp< Strides, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorTraceOp< Dims, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorVolumePatchOp< Planes, Rows, Cols, ArgType >, Device >::TensorEvaluator(), Eigen::TensorEvaluator< const TensorConvolutionOp< Indices, InputArgType, KernelArgType >, Eigen::SyclDevice >::TensorEvaluator(), Eigen::TensorReductionEvaluatorBase< const TensorReductionOp< Op, Dims, ArgType, MakePointer_ >, Device >::TensorReductionEvaluatorBase(), RNG::test(), test2dHyperbolicRotation(), test2dRotation(), test3dRotation(), test_1d(), test_1D(), test_1D_fft_ifft_invariant(), test_1d_scan(), test_1D_sycl(), test_2D(), test_2D_fft_ifft_invariant(), test_2D_sycl(), test_3d(), test_3D_fft_ifft_invariant(), test_4d_scan(), test_abs(), test_additions(), test_all_dimensions_trace(), test_arg(), test_argmax_dim(), test_argmin_dim(), test_array(), test_assign(), test_assign_of_const_tensor(), test_assign_to_tensor_chipping(), test_assign_to_tensor_shuffle(), test_assign_to_tensor_slice(), test_async_execute_binary_expr(), test_async_execute_unary_expr(), test_async_multithread_chip(), test_async_multithread_contraction_agrees_with_singlethread(), test_async_multithread_elementwise(), test_async_multithread_volume_patch(), test_async_parallel_for(), test_async_sharded_by_inner_dim_contraction(), test_async_sharded_by_inner_dim_contraction_with_output_kernel(), test_auto_resize(), test_binary_builtins_fixed_arg2(), test_binary_builtins_func(), test_binary_parallel_for(), test_block_io_copy_data_from_source_to_target(), test_block_io_copy_using_reordered_dimensions(), test_block_io_squeeze_ones(), test_block_io_zero_stride(), test_block_mapper_maps_every_element(), test_boolean(), test_broadcast_sycl(), test_broadcast_sycl_fixed(), test_cancel(), test_casting(), test_chip_as_lvalue(), test_chip_as_lvalue_sycl(), test_chip_in_expr(), test_chip_raw_data_col_major(), test_chip_raw_data_row_major(), test_clip(), test_clz_ctz(), test_clz_ctz_random(), test_coeff_wise(), test_complex_operators(), test_complex_sqrt(), test_composition(), test_compound_assign(), test_compound_assignment(), test_concat(), test_concatenation_as_lvalue(), test_conj_helper(), test_conjugate(), test_consistency(), test_const(), test_constants(), test_contraction_corner_cases(), test_contractions(), test_conversion(), test_create_destroy_empty_pool(), test_custom(), test_custom_binary_op(), test_custom_binary_op_sycl(), test_custom_unary_op(), test_custom_unary_op_sycl(), test_default(), test_device_memory(), test_diagonal(), test_dynamic_bool(), test_dynamic_chip(), test_dynamic_chip_sycl(), test_dynamic_index_list(), test_eigenvalues_direct(), test_empty_runqueue(), test_empty_shuffling(), test_empty_slice(), test_equality(), test_eval_tensor_broadcast(), test_eval_tensor_chipping(), test_eval_tensor_padding(), test_eval_tensor_reverse(), test_eval_tensor_shuffle(), test_eval_tensor_slice(), test_execute_binary_expr(), test_execute_broadcasting(), test_execute_broadcasting_of_forced_eval(), test_execute_generator_op(), test_execute_reshape(), test_execute_reverse_rvalue(), test_execute_shuffle_lvalue(), test_execute_shuffle_rvalue(), test_execute_slice_lvalue(), test_execute_slice_rvalue(), test_execute_unary_expr(), test_expr_reverse(), test_expr_roll(), test_expr_shuffling(), test_fft_complex_input_golden(), test_fft_non_power_of_2_round_trip(), test_fft_real_input_energy(), test_fft_real_input_golden(), test_first_dim_reductions_max_with_offset_sycl(), test_first_dim_reductions_sum_sycl(), test_fixed_size_broadcasting(), test_float_ceiling(), test_float_flooring(), test_float_rounding(), test_forced_eval_sycl(), test_from_tensor(), test_full_reductions(), test_functors(), test_gaussian(), test_gaussian_sycl(), test_gpu_contractions(), test_gpu_conversion(), test_gpu_elementwise(), test_gpu_forced_evals(), test_gpu_numext(), test_gpu_reductions(), test_gpu_trancendental(), test_gpu_unary(), test_holes(), test_image_op_sycl(), test_imagenet_patches(), test_imagenet_patches_sycl(), test_initialization(), test_innermost_first_dims(), test_innermost_last_dims(), test_isfinite(), test_isinf(), test_isnan(), test_larg_expr1D(), test_larg_expr2D(), test_larg_expr3D(), test_large_contraction(), test_large_contraction_with_output_kernel(), test_large_number_of_tasks_no_spill(), test_large_number_of_tasks_with_spill(), test_last_dim_reductions_max_with_offset_sycl(), test_matrix_inverse(), test_matrix_vector(), test_memcpy(), test_minmax_nan_propagation_templ(), test_mixed_index_list(), test_move(), test_multiple_dims(), test_multithread_chip(), test_multithread_compound_assignment(), test_multithread_contraction(), test_multithread_contraction_agrees_with_singlethread(), test_multithread_contraction_with_output_kernel(), test_multithread_elementwise(), test_multithread_shuffle(), test_multithread_volume_patch(), test_mutable_unaryview(), test_nested_ops_with_ref(), test_nnls_repeated_calls_to_compute_and_solve(), test_no_out_of_bounds(), test_normal(), test_orderings(), test_padded_expr(), test_parallelism(), test_patch_no_extra_dim(), test_patch_no_extra_dim_sycl(), test_patch_padding_same(), test_patch_padding_same_negative_padding_clip_to_zero(), test_patch_padding_same_sycl(), test_patch_padding_valid(), test_patch_padding_valid_same_value(), test_patch_padding_valid_same_value_sycl(), test_patch_padding_valid_sycl(), test_plus(), test_plus_equal(), test_pool_partitions(), test_product(), test_random_setter(), test_reduce_middle_dims(), test_reductions_in_expr(), test_redux(), test_ref_in_expr(), test_ref_of_ref(), test_replicate(), test_reshape_as_lvalue(), test_reshape_in_expr(), test_same_type(), test_scalar(), test_scalar_sugar_add_mul(), test_scalar_sugar_sub_div(), test_select(), test_sharded_by_inner_dim_contraction(), test_sharded_by_inner_dim_contraction_with_output_kernel(), test_shuffle_unshuffle(), test_shuffling_as_value(), test_sigmoid(), test_sigmoid_sycl(), test_signed_32bit(), test_signed_64bit(), test_simple_assign(), test_simple_broadcasting(), test_simple_broadcasting_n_by_one(), test_simple_broadcasting_one_by_n(), test_simple_broadcasting_one_by_n_by_one_1d(), test_simple_broadcasting_one_by_n_by_one_2d(), test_simple_chip(), test_simple_concatenation(), test_simple_image_patch_sycl(), test_simple_inflation(), test_simple_inflation_sycl(), test_simple_lvalue_ref(), test_simple_padding(), test_simple_patch(), test_simple_patch_sycl(), test_simple_reductions(), test_simple_reshape(), test_simple_reverse(), test_simple_roll(), test_simple_rvalue_ref(), test_simple_shuffling(), test_simple_shuffling_sycl(), test_simple_slice(), test_simple_striding(), test_simple_swap(), test_simple_swap_sycl(), test_simple_thread_local(), test_simple_trace(), test_single_voxel_patch(), test_single_voxel_patch_sycl(), test_size_one_broadcasting(), test_skewed_inner_dim_block_shape(), test_slice(), test_slice_as_lvalue(), test_slice_in_expr(), test_slice_raw_data(), test_slices(), test_small_blocking_factors(), test_static_broadcasting(), test_static_chip_sycl(), test_static_dims(), test_static_index_list(), test_static_reshape(), test_stl_container_detection(), test_stl_iterators(), test_stress_eventcount(), test_stress_runqueue(), test_strided_slice(), test_strided_slice_as_rhs_sycl(), test_strided_slice_write(), test_strided_slice_write_sycl(), test_striding_as_lvalue(), test_sub_fft_ifft_invariant(), test_sum_accuracy(), test_swap_as_lvalue(), test_swap_as_lvalue_sycl(), test_sycl_argmax_dim(), test_sycl_argmin_dim(), test_sycl_cast(), test_sycl_computations(), test_sycl_contraction(), test_sycl_contraction_sizes(), test_sycl_cumsum(), test_sycl_mem_sync(), test_sycl_mem_sync_offsets(), test_sycl_mem_transfers(), test_sycl_memset_offsets(), test_symgroups_dynamic(), test_symgroups_selection(), test_tanh(), test_tanh_sycl(), test_tensor_asym(), test_tensor_dynsym(), test_tensor_epsilon(), test_tensor_maps(), test_tensor_product(), test_tensor_randacc(), test_tensor_sym(), test_tensor_vector(), test_trace_in_expr(), test_trivial_reductions(), test_type2index_list(), test_type_cast(), test_type_casting(), test_unary_builtins_for_scalar(), test_unary_builtins_return_bool(), test_unary_parallel_for(), test_uniform_block_shape(), test_unsigned_32bit(), test_unsigned_64bit(), test_user_defined_reductions(), test_vectorized_broadcasting(), testGeneral(), TreeTest< Dim >::testIntersect1(), TreeTest< Dim >::testIntersect2(), testLogThenExp(), testMatrixType(), TreeTest< Dim >::testMinimize1(), TreeTest< Dim >::testMinimize2(), testPascal(), TestRefineablePoissonProblem< ELEMENT >::TestRefineablePoissonProblem(), testSingular(), testVectorType(), oomph::TetgenMesh< ELEMENT >::TetgenMesh(), oomph::TetgenScaffoldMesh::TetgenScaffoldMesh(), oomph::TetMeshFacetedClosedSurfaceForRemesh::TetMeshFacetedClosedSurfaceForRemesh(), oomph::TetMeshVertex::TetMeshVertex(), TFaceTestProblem< ELEMENT >::TFaceTestProblem(), ThermalProblem< ELEMENT >::ThermalProblem(), oomph::ThinLayerBrickOnTetMesh< ELEMENT >::ThinLayerBrickOnTetMesh(), Eigen::ThreadLocal< T, Initialize, Release >::ThreadLocal(), Eigen::ThreadPoolTempl< Environment >::ThreadPoolTempl(), ThreeDimBethertonProblem< ELEMENT >::ThreeDimBethertonProblem(), ThreeDPoissonProblem< ELEMENT >::ThreeDPoissonProblem(), oomph::Time::time(), oomph::TimeStepper::time_derivative(), oomph::IMRODEElement::time_interpolate_u(), oomph::Problem::time_stepper_pt(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElement< ELEMENT >::TimeHarmonicFourierDecomposedLinearElasticityTractionElement(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::TimeHarmonicLinearElasticityTractionElement(), oomph::TimeHarmonicLinElastLoadedByHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::TimeHarmonicLinElastLoadedByHelmholtzPressureBCElement(), oomph::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement< ELASTICITY_BULK_ELEMENT, HELMHOLTZ_BULK_ELEMENT >::TimeHarmonicLinElastLoadedByPMLHelmholtzPressureBCElement(), RefineableOneDAdvectionDiffusionReactionProblem< ELEMENT >::timestep(), ActivatorInhibitorProblem< ELEMENT >::timestep(), RefineableActivatorInhibitorProblem< ELEMENT >::timestep(), oomph::LowStorageRungeKutta< ORDER >::timestep(), To32BitDims(), TorusProblem< ELEMENT >::TorusProblem(), Eigen::SparseLUMatrixUReturnType< MatrixLType, MatrixUType >::toSparse(), Eigen::SparseLUMatrixLReturnType< MappedSupernodalType >::toSparse(), RefineableBinArray::total_number_of_sample_points_computed_recursively(), oomph::AxisymmetricNavierStokesEquations::traction(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::traction(), TurekProblem< FLUID_ELEMENT, SOLID_ELEMENT >::traction_mesh_pt(), Eigen::internal::tranposeResults(), transform(), oomph::AxisymmetricPoroelasticityEquations::transform_basis(), oomph::PoroelasticityEquations< DIM >::transform_basis(), oomph::DarcyEquations< DIM >::transform_basis(), oomph::FiniteElement::transform_derivatives(), oomph::FiniteElement::transform_second_derivatives_template(), SmallMatrix< numberOfRows, numberOfColumns >::transpose(), oomph::Tree::traverse_all(), oomph::Tree::traverse_all_but_leaves(), oomph::Tree::traverse_leaves(), oomph::TreeForest::tree_pt(), TriangleFaceTestProblem< ELEMENT >::TriangleFaceTestProblem(), oomph::TriangleMeshClosedCurve::TriangleMeshClosedCurve(), oomph::TriangleMeshOpenCurve::TriangleMeshOpenCurve(), oomph::TriangleMeshPolygon::TriangleMeshPolygon(), oomph::TriangleMeshPolyLine::TriangleMeshPolyLine(), oomph::TriangleScaffoldMesh::TriangleScaffoldMesh(), triangular_square(), TriangulatedWall::TriangulatedWall(), Eigen::internal::tridiagonalization_inplace(), Eigen::internal::trig_reduce_huge(), Eigen::internal::triSolve(), tetgenmesh::tsbond(), tetgenmesh::tssbond1(), oomph::TubeDomain::TubeDomain(), oomph::TubeMesh< ELEMENT >::TubeMesh(), TurekProblem< FLUID_ELEMENT, SOLID_ELEMENT >::TurekProblem(), oomph::YoungLaplaceEquations::two_norm(), TwoDDGMesh< ELEMENT >::TwoDDGMesh(), TwoDDGProblem< ELEMENT >::TwoDDGProblem(), TwoLayerInterfaceProblem< ELEMENT >::TwoLayerInterfaceProblem(), oomph::FluidInterfaceElement::u(), SpineGravityTractionElement< ELEMENT >::u(), oomph::PolarNavierStokesTractionElement< ELEMENT >::u(), oomph::PolarStressIntegralElement< ELEMENT >::u(), oomph::LinearisedAxisymmetricFluidInterfaceElement::u(), QOrrSommerfeldElement< 1, NNODE_1D >::u(), oomph::NavierStokesElementWithSingularity< BASIC_NAVIER_STOKES_ELEMENT >::u_bar(), PoissonElementWithSingularity< BASIC_POISSON_ELEMENT >::u_bar(), oomph::AxisymmetricNavierStokesEquations::u_index_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::u_index_axi_nst(), oomph::AxisymmetricLinearElasticityEquationsBase::u_index_axisymmetric_linear_elasticity(), oomph::FluxTransportEquations< DIM >::u_index_flux_transport(), oomph::LinearisedAxisymmetricNavierStokesEquations::u_index_lin_axi_nst(), oomph::HomogenisedLinearElasticityEquationsBase::u_index_linear_elasticity(), oomph::LinearElasticityEquationsBase< DIM >::u_index_linear_elasticity(), oomph::LinearisedAxisymmetricNavierStokesEquations::u_index_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::u_index_linearised_nst(), oomph::MultiPoissonEquations< DIM, NFIELDS >::u_index_multi_poisson(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::u_index_nst(), oomph::NavierStokesEquations< DIM >::u_index_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::u_index_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::u_index_nst(), oomph::PolarNavierStokesEquations::u_index_pnst(), oomph::SphericalNavierStokesEquations::u_index_spherical_nst(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::u_index_time_harmonic_fourier_decomposed_linear_elasticity(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::u_index_time_harmonic_linear_elasticity(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::u_index_time_harmonic_linear_elasticity(), oomph::PolarStreamfunctionEquations::u_index_velocity(), ComplexHarmonicEquations::u_local_eqn(), oomph::NavierStokesFluxControlElement< ELEMENT >::u_local_eqn(), oomph::NavierStokesTractionElement< ELEMENT >::u_local_eqn(), oomph::PolarNavierStokesTractionElement< ELEMENT >::u_local_eqn(), oomph::PolarStressIntegralElement< ELEMENT >::u_local_eqn(), oomph::NavierStokesSpaceTimeTractionElement< ELEMENT >::u_local_eqn(), oomph::NavierStokesMixedOrderSpaceTimeTractionElement< ELEMENT >::u_local_eqn(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::u_local_eqn(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::u_nst(), oomph::NavierStokesEquations< DIM >::u_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::u_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::u_nst(), oomph::PolarCrouzeixRaviartElement::u_pnst(), oomph::PolarTaylorHoodElement::u_pnst(), oomph::SphericalNavierStokesEquations::u_spherical_nst(), rapidjson::GenericDocument< Encoding, Allocator >::Uint(), rapidjson::GenericDocument< Encoding, Allocator >::Uint64(), Eigen::internal::bytewise_bitwise_helper< T >::unary(), unary_op_test(), Eigen::internal::ldlt_inplace< Lower >::unblocked(), NurbsSurface::unclampKnots(), oomph::Data::unconstrain(), oomph::Data::unconstrain_all(), oomph::SegregatableFSIProblem::under_relax_solid(), Eigen::MatrixBase< Derived >::Unit(), UnitCubePoissonMGProblem< ELEMENT, MESH >::UnitCubePoissonMGProblem(), oomph::Data::unpin(), oomph::Data::unpin_all(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::unpin_all(), FlowAroundCylinderProblem< ELEMENT >::unpin_all_base_flow_dofs(), oomph::ImmersedRigidBodyElement::unpin_centre_of_mass_coordinate(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::RefineableLinearisedAxisymmetricQCrouzeixRaviartElement::unpin_elemental_pressure_dofs(), oomph::RefineableLinearisedQCrouzeixRaviartElement::unpin_elemental_pressure_dofs(), oomph::RefineableLinearisedQTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::SolidNode::unpin_position(), oomph::LinearisedQCrouzeixRaviartElement::unpin_real_or_imag(), UnstructuredImmersedEllipseProblem< ELEMENT >::unpin_rigid_body(), ConvectionProblem< NST_ELEMENT, AD_ELEMENT >::unpin_surface(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::unpin_surface(), oomph::Problem::unsteady_newton_solve(), ElasticRingProblem< ELEMENT >::unsteady_run(), StabilityProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::unsteady_run(), SegregatedFSICollapsibleChannelProblem< ELEMENT >::unsteady_run(), RotatingCylinderProblem< ELEMENT, TIMESTEPPER >::unsteady_run(), InterfaceProblem< ELEMENT, TIMESTEPPER >::unsteady_run(), oomph::SegregatableFSIProblem::unsteady_segregated_solve(), UnsteadyHeatProblem< ELEMENT >::UnsteadyHeatProblem(), UnstructuredFluidProblem< ELEMENT >::UnstructuredFluidProblem(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::UnstructuredFSIProblem(), UnstructuredImmersedEllipseProblem< ELEMENT >::UnstructuredImmersedEllipseProblem(), UnstructuredSolidProblem< ELEMENT, MESH >::UnstructuredSolidProblem(), UnstructuredTorusProblem< ELEMENT >::UnstructuredTorusProblem(), oomph::GMRESBlockPreconditioner::update(), oomph::GMRES< MATRIX >::update(), oomph::AugmentedProblemGMRES::update(), oomph::ComplexGMRES< MATRIX >::update(), oomph::HelmholtzGMRESMG< MATRIX >::update(), oomph::HelmholtzFGMRESMG< MATRIX >::update(), oomph::RefineableTetgenMesh< ELEMENT >::update_faceted_surface_using_face_mesh(), update_latest_fixed_point_iteration_guess_for_strain_rate(), oomph::SolarRadiationBase::update_limiting_angles(), oomph::AlgebraicRefineableQuarterCircleSectorMesh< ELEMENT >::update_node_update(), oomph::AlgebraicRefineableQuarterTubeMesh< ELEMENT >::update_node_update(), oomph::LineVisualiser::update_plot_points_coordinates(), oomph::RefineableTriangleMesh< ELEMENT >::update_polyline_representation_from_restart(), SimpleSpineMesh< ELEMENT >::update_spine_heights(), UpdateCoeffSet(), Eigen::TensorEvaluator< const TensorPaddingOp< PaddingDimensions, ArgType >, Device >::updateCostPerDimension(), Membrane::updateFaceNeighbors(), PeriodicBoundaryHandler::updateParticles(), PeriodicBoundaryHandler::updateParticleStatus(), MeshTriangle::updateVertexAndNormal(), TriangleWall::updateVertexAndNormal(), oomph::TwoLayerPerturbedSpineMesh< ELEMENT >::upper_layer_element_pt(), ElasticTwoLayerMesh< ELEMENT >::upper_layer_element_pt(), oomph::TwoLayerSpineMesh< ELEMENT >::upper_layer_element_pt(), use_n_times(), SpeciesHandler::useAngularDOFs(), uuatoi(), PSD::validateCumulativeDistribution(), oomph::Node::value(), Eigen::internal::CompressedStorage< Scalar_, StorageIndex_ >::value(), oomph::Data::value(), Eigen::IndexList< FirstType, OtherTypes >::value_known_statically(), Eigen::IndexPairList< FirstType, OtherTypes >::value_known_statically(), Eigen::internal::tuple_coeff< 0, ValueT >::value_known_statically(), Eigen::internal::tuple_coeff< Idx, ValueT >::value_known_statically(), oomph::Data::value_pt(), oomph::DoubleMultiVector::values(), oomph::VectorHelpers::vector_diff(), c_interface_base< real >::vector_from_stl(), oomph::YoungLaplaceEquations::vector_sum(), c_interface_base< real >::vector_to_stl(), vectorRedux(), vectorVisitor(), vectorwiseop_matrix(), oomph::NavierStokesElementWithSingularity< BASIC_NAVIER_STOKES_ELEMENT >::velocity_singular_function(), verify_component_wise(), verify_euler(), verify_impl(), MortaringValidationProblem< ELEMENT, NON_MORTAR_ELEMENT >::verify_mortared_nodes_coincide(), VerifyBlockAssignment(), VerifyBlockEvaluator(), oomph::TriangleMeshPolyLine::vertex_coordinate(), oomph::TetMeshFacetedSurface::vertex_coordinate(), VibratingShellProblem< ELEMENT >::VibratingShellProblem(), vkill_trailing(), oomph::VorticitySmootherElement< ELEMENT >::vorticity_and_its_derivs(), oomph::VorticitySmootherElement< ELEMENT >::vorticity_dof_to_container_id(), oomph::VorticitySmootherElement< ELEMENT >::vorticity_error_squared(), oomph::Global_Physical_Variables::wall_unit_normal_outlet_fct(), Global_Physical_Variables::wall_unit_normal_outlet_fct(), WearableTriangulatedWall::WearableTriangulatedWall(), oomph::PiecewiseGauss< DIM, NPTS_1D >::weight(), oomph::Gauss< 1, 2 >::weight(), oomph::Gauss< 1, 3 >::weight(), oomph::Gauss< 1, 4 >::weight(), oomph::Gauss< 2, 2 >::weight(), oomph::Gauss< 2, 3 >::weight(), oomph::Gauss< 2, 4 >::weight(), oomph::Gauss< 3, 2 >::weight(), oomph::Gauss< 3, 3 >::weight(), oomph::Gauss< 3, 4 >::weight(), oomph::Gauss_Rescaled< DIM, NPTS_1D >::weight(), oomph::TGauss< 1, 2 >::weight(), oomph::TGauss< 1, 3 >::weight(), oomph::TGauss< 1, 4 >::weight(), oomph::TGauss< 1, 5 >::weight(), oomph::TGauss< 2, 2 >::weight(), oomph::TGauss< 2, 3 >::weight(), oomph::TGauss< 2, 4 >::weight(), oomph::TGauss< 2, 13 >::weight(), oomph::TGauss< 2, 9 >::weight(), oomph::TGauss< 2, 16 >::weight(), oomph::TGauss< 2, 5 >::weight(), oomph::TGauss< 3, 2 >::weight(), oomph::TGauss< 3, 3 >::weight(), oomph::TGauss< 3, 5 >::weight(), oomph::GaussLobattoLegendre< 1, NPTS_1D >::weight(), oomph::GaussLobattoLegendre< 2, NPTS_1D >::weight(), oomph::GaussLobattoLegendre< 3, NPTS_1D >::weight(), oomph::GaussLegendre< 1, NPTS_1D >::weight(), oomph::GaussLegendre< 2, NPTS_1D >::weight(), oomph::GaussLegendre< 3, NPTS_1D >::weight(), oomph::TimeStepper::weight(), oomph::Steady< NSTEPS >::weight(), Wind_fct_pt(), oomph::WomersleyMesh< WOMERSLEY_ELEMENT >::WomersleyMesh(), oomph::WomersleyProblem< ELEMENT, DIM >::WomersleyProblem(), NurbsSurface::wrapAroundInU(), NurbsSurface::wrapAroundInV(), Eigen::TensorSycl::internal::write(), InteractionHandler::write(), PolydisperseInsertionBoundary::write(), Membrane::write(), MeshTriangle::write(), TriangleWall::write(), DPMBase::write(), oomph::ODEProblem::write_additional_trace_data(), Eigen::internal::gemm_class< Scalar, is_unit_inc >::write_c(), SegregatedFSICollapsibleChannelProblem< ELEMENT >::write_convergence_history(), SegregatedFSICollapsibleChannelProblem< ELEMENT >::write_convergence_history_header(), oomph::GmshTetScaffoldMesh::write_geo_file(), oomph::QElement< 1, NNODE_1D >::write_paraview_offsets(), oomph::QElement< 2, NNODE_1D >::write_paraview_offsets(), oomph::QElement< 3, NNODE_1D >::write_paraview_offsets(), oomph::TElement< 1, NNODE_1D >::write_paraview_offsets(), oomph::TElement< 2, NNODE_1D >::write_paraview_offsets(), oomph::TElement< 3, NNODE_1D >::write_paraview_offsets(), oomph::QElement< 1, NNODE_1D >::write_paraview_output_offset_information(), oomph::QElement< 2, NNODE_1D >::write_paraview_output_offset_information(), oomph::QElement< 3, NNODE_1D >::write_paraview_output_offset_information(), oomph::TElement< 1, NNODE_1D >::write_paraview_output_offset_information(), oomph::TElement< 2, NNODE_1D >::write_paraview_output_offset_information(), oomph::TElement< 3, NNODE_1D >::write_paraview_output_offset_information(), oomph::QElement< 1, NNODE_1D >::write_paraview_type(), oomph::QElement< 2, NNODE_1D >::write_paraview_type(), oomph::QElement< 3, NNODE_1D >::write_paraview_type(), oomph::TElement< 1, NNODE_1D >::write_paraview_type(), oomph::TElement< 2, NNODE_1D >::write_paraview_type(), oomph::TElement< 3, NNODE_1D >::write_paraview_type(), oomph::TElement< 2, NNODE_1D >::write_tecplot_zone_footer(), oomph::TElement< 3, NNODE_1D >::write_tecplot_zone_footer(), oomph::MyProblem::write_trace(), BaseCluster::writeAmatFile(), Eigen::TensorEvaluator< TensorChippingOp< DimId, ArgType >, Device >::writeBlock(), Eigen::TensorEvaluator< TensorShufflingOp< Shuffle, ArgType >, Device >::writeBlock(), helpers::writeCommandLineToFile(), VTKData::writeConnectivity(), rapidjson::Writer< Stream, Encoding, Allocator >::WriteDouble(), SlidingFrictionUnitTest::writeEneTimeStep(), ParticleVtkWriter::writeExtraFields(), rapidjson::Writer< Stream, Encoding, Allocator >::WriteInt(), rapidjson::Writer< Stream, Encoding, Allocator >::WriteLongDouble(), rapidjson::Writer< Stream, Encoding, Allocator >::WriteLongLong(), CFile::writeP4C(), CFile::writeP4P(), CFile::writeP4W(), Eigen::TensorEvaluator< TensorChippingOp< DimId, ArgType >, Device >::writePacket(), Eigen::TensorEvaluator< TensorConcatenationOp< Axis, LeftArgType, RightArgType >, Device >::writePacket(), Eigen::TensorEvaluator< TensorSlicingOp< StartIndices, Sizes, ArgType >, Device >::writePacket(), Eigen::TensorEvaluator< TensorReverseOp< ReverseDimensions, ArgType >, Device >::writePacket(), Eigen::TensorEvaluator< TensorRollOp< RollDimensions, ArgType >, Device >::writePacket(), Eigen::TensorEvaluator< TensorShufflingOp< Shuffle, ArgType >, Device >::writePacket(), Eigen::TensorEvaluator< TensorStridingOp< Strides, ArgType >, Device >::writePacket(), VTKData::writePointData(), DataFiles::writeTimeStep(), SilbertHstop::writeToEne(), LevelSetWall::writeToFile(), BaseCluster::writeToOverlFile(), SolidProblem< ELEMENT_TYPE >::writeToVTK(), VTKData::writeTypes(), rapidjson::Writer< Stream, Encoding, Allocator >::WriteULongLong(), NurbsWall::writeVTK(), WallVTKWriter::writeVTKCells(), SuperQuadricParticleVtkWriter::writeVTKOrientation(), InteractionVTKWriter::writeVTKPointData(), WallVTKWriter::writeVTKSurfaceArea(), NurbsWall::writeWallDetailsVTK(), WearableNurbsWall::writeWallDetailsVTK(), WallHandler::writeWallDetailsVTKBoundingBox(), oomph::Node::x(), oomph::TetMeshVertex::x(), oomph::PolarStreamfunctionTractionElement< ELEMENT >::x(), oomph::PolarNavierStokesTractionElement< ELEMENT >::x(), oomph::PolarStressIntegralElement< ELEMENT >::x(), oomph::Node::x_gen(), oomph::Node::x_gen_range_check(), oomph::Node::x_position_pt(), oomph::Node::x_pt(), oomph::XdaTetMesh< ELEMENT >::XdaTetMesh(), oomph::LinearisedAxisymmetricNavierStokesEquations::xhat_index_lin_axi_nst(), oomph::SolidNode::xi(), oomph::SolidNode::xi_gen(), oomph::SolidNode::xi_gen_range_check(), YoungLaplaceProblem< ELEMENT >::YoungLaplaceProblem(), OneDPoissonProblem< ELEMENT >::zero_dofs(), oomph::AxisymmetricLinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::AxisymmetricNavierStokesTractionElementHelper::Zero_traction_fct(), oomph::AxisymmetricPoroelasticityTractionElementHelper::Zero_traction_fct(), oomph::LinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::PoroelasticityFaceElementHelper::Zero_traction_fct(), oomph::PMLTimeHarmonicLinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::TimeHarmonicLinearElasticityTractionElementHelper::Zero_traction_fct(), oomph::KirchhoffLoveBeamEquations::Zero_traction_fct(), oomph::KirchhoffLoveShellEquations::Zero_traction_fct(), oomph::SolidTractionElementHelper::Zero_traction_fct(), zeroReduction(), oomph::SurfaceContactElementBase< ELEMENT >::zeta_nodal(), oomph::UnsteadyHeatBaseFaceElement< ELEMENT >::zeta_nodal(), oomph::SurfaceMeltElement< ELEMENT >::zeta_nodal(), oomph::HeatedLinearSurfaceContactElement< ELEMENT >::zeta_nodal(), oomph::HeatedPenetratorFluxElement< ELEMENT >::zeta_nodal(), StefanBoltzmannMeltElement< ELEMENT >::zeta_nodal(), oomph::StefanBoltzmannUnsteadyHeatFluxElement< ELEMENT >::zeta_nodal(), oomph::UnsteadyHeatFluxPseudoMeltElement< ELEMENT >::zeta_nodal(), oomph::AdvectionDiffusionFluxElement< ELEMENT >::zeta_nodal(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::zeta_nodal(), oomph::AxisymmetricPoroelasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::BiharmonicFluxElement< DIM >::zeta_nodal(), oomph::DarcyFaceElement< ELEMENT >::zeta_nodal(), oomph::ElasticLineVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::SpineLineVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::ElasticAxisymmetricVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::SpineAxisymmetricVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::ElasticSurfaceVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::SpineSurfaceVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::ElasticUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::zeta_nodal(), oomph::ElasticPointFluidInterfaceBoundingElement< ELEMENT >::zeta_nodal(), oomph::ElasticLineFluidInterfaceBoundingElement< ELEMENT >::zeta_nodal(), oomph::DGEulerFaceElement< ELEMENT >::zeta_nodal(), oomph::DGEulerFaceReflectionElement< ELEMENT >::zeta_nodal(), oomph::FourierDecomposedHelmholtzBCElementBase< ELEMENT >::zeta_nodal(), oomph::FiniteElement::zeta_nodal(), oomph::SolidFiniteElement::zeta_nodal(), oomph::FaceElement::zeta_nodal(), oomph::SolidFaceElement::zeta_nodal(), oomph::DummyFaceElement< ELEMENT >::zeta_nodal(), oomph::FreeStandingFaceElement< ELEMENT >::zeta_nodal(), oomph::FaceElementAsGeomObject< ELEMENT >::zeta_nodal(), oomph::GenericLagrangeInterpolatedProjectableElement< ELEMENT >::zeta_nodal(), oomph::ProjectableElement< ELEMENT >::zeta_nodal(), oomph::HelmholtzBCElementBase< ELEMENT >::zeta_nodal(), oomph::HelmholtzFluxElement< ELEMENT >::zeta_nodal(), oomph::LinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::LinearWaveFluxElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesTractionElement< ELEMENT >::zeta_nodal(), oomph::ImposeImpenetrabilityElement< ELEMENT >::zeta_nodal(), oomph::ImposeParallelOutflowElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::zeta_nodal(), oomph::PMLFourierDecomposedHelmholtzPowerMonitorElement< ELEMENT >::zeta_nodal(), oomph::PMLHelmholtzPowerElement< ELEMENT >::zeta_nodal(), oomph::PMLHelmholtzFluxElement< ELEMENT >::zeta_nodal(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::PoissonFluxElement< ELEMENT >::zeta_nodal(), oomph::PoroelasticityFaceElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesSpaceTimeTractionElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesMixedOrderSpaceTimeTractionElement< ELEMENT >::zeta_nodal(), oomph::SphericalAdvectionDiffusionFluxElement< ELEMENT >::zeta_nodal(), oomph::SteadyAxisymAdvectionDiffusionFluxElement< ELEMENT >::zeta_nodal(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::UnsteadyHeatFluxElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::zeta_nodal(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::zeta_nodal(), oomph::BoundaryNode< NODE_TYPE >::~BoundaryNode(), oomph::Circle::~Circle(), oomph::Data::~Data(), oomph::Domain::~Domain(), oomph::ExtrudedCubeMeshFromQuadMesh< ELEMENT >::~ExtrudedCubeMeshFromQuadMesh(), oomph::GeneralCircle::~GeneralCircle(), oomph::GeneralisedElement::~GeneralisedElement(), Eigen::MaxSizeVector< T >::~MaxSizeVector(), oomph::Mesh::~Mesh(), oomph::PerturbedSpineMesh::~PerturbedSpineMesh(), Eigen::RandomSetter< SparseMatrixType, MapTraits, OuterPacketBits >::~RandomSetter(), RefineableBin::~RefineableBin(), RefineableBinArray::~RefineableBinArray(), oomph::SimpleBlockDiagonalPreconditioner< MATRIX >::~SimpleBlockDiagonalPreconditioner(), oomph::SpineMesh::~SpineMesh(), Eigen::internal::TensorBlockScratchAllocator< Device >::~TensorBlockScratchAllocator(), Eigen::ThreadPoolTempl< Environment >::~ThreadPoolTempl(), oomph::Tree::~Tree(), and oomph::TreeForest::~TreeForest().

◆ n

int n = 10000

◆ x

x = VectorXd::Random(n)

Eigen
doc
snippets
BiCGSTAB_step_by_step.cpp
Generated on Wed Aug 27 2025 17:04:52 for MercuryDPM by 1.9.1