oomph::PeriodicOrbitBaseElement Class Reference

#include <periodic_orbit_handler.h>

Inheritance diagram for oomph::PeriodicOrbitBaseElement:

Public Member Functions
	PeriodicOrbitBaseElement ()
virtual void	get_non_external_dofs (Vector< double > &u)
	Interface to get the current value of all (internal and shared) unknowns. More...
virtual void	get_non_external_ddofs_dt (Vector< double > &du_dt)
virtual void	get_inner_product_matrix (DenseMatrix< double > &inner_product)
	Get the inner product matrix. More...
virtual void	spacetime_output (std::ostream &outilfe, const unsigned &Nplot, const double &time=0.0)
Public Member Functions inherited from oomph::GeneralisedElement
	GeneralisedElement ()
	Constructor: Initialise all pointers and all values to zero. More...
virtual	~GeneralisedElement ()
	Virtual destructor to clean up any memory allocated by the object. More...
	GeneralisedElement (const GeneralisedElement &)=delete
	Broken copy constructor. More...
void	operator= (const GeneralisedElement &)=delete
	Broken assignment operator. More...
Data *&	internal_data_pt (const unsigned &i)
	Return a pointer to i-th internal data object. More...
Data *const &	internal_data_pt (const unsigned &i) const
	Return a pointer to i-th internal data object (const version) More...
Data *&	external_data_pt (const unsigned &i)
	Return a pointer to i-th external data object. More...
Data *const &	external_data_pt (const unsigned &i) const
	Return a pointer to i-th external data object (const version) More...
unsigned long	eqn_number (const unsigned &ieqn_local) const
int	local_eqn_number (const unsigned long &ieqn_global) const
unsigned	add_external_data (Data *const &data_pt, const bool &fd=true)
bool	external_data_fd (const unsigned &i) const
void	exclude_external_data_fd (const unsigned &i)
void	include_external_data_fd (const unsigned &i)
void	flush_external_data ()
	Flush all external data. More...
void	flush_external_data (Data *const &data_pt)
	Flush the object addressed by data_pt from the external data array. More...
unsigned	ninternal_data () const
	Return the number of internal data objects. More...
unsigned	nexternal_data () const
	Return the number of external data objects. More...
unsigned	ndof () const
	Return the number of equations/dofs in the element. More...
void	dof_vector (const unsigned &t, Vector< double > &dof)
	Return the vector of dof values at time level t. More...
void	dof_pt_vector (Vector< double * > &dof_pt)
	Return the vector of pointers to dof values. More...
void	set_internal_data_time_stepper (const unsigned &i, TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)
void	assign_internal_eqn_numbers (unsigned long &global_number, Vector< double * > &Dof_pt)
void	describe_dofs (std::ostream &out, const std::string &current_string) const
virtual void	describe_local_dofs (std::ostream &out, const std::string &current_string) const
void	add_internal_value_pt_to_map (std::map< unsigned, double * > &map_of_value_pt)
virtual void	assign_local_eqn_numbers (const bool &store_local_dof_pt)
virtual void	complete_setup_of_dependencies ()
virtual void	get_residuals (Vector< double > &residuals)
virtual void	get_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)
virtual void	get_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)
virtual void	get_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)
virtual void	get_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)
virtual void	get_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)
virtual void	get_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)
virtual void	get_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)
virtual void	get_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)
virtual void	get_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)
virtual unsigned	self_test ()
virtual void	compute_norm (Vector< double > &norm)
virtual void	compute_norm (double &norm)
virtual unsigned	ndof_types () const
virtual void	get_dof_numbers_for_unknowns (std::list< std::pair< unsigned long, unsigned >> &dof_lookup_list) const

Additional Inherited Members
Static Public Attributes inherited from oomph::GeneralisedElement
static bool	Suppress_warning_about_repeated_internal_data
static bool	Suppress_warning_about_repeated_external_data = true
static double	Default_fd_jacobian_step = 1.0e-8
Protected Member Functions inherited from oomph::GeneralisedElement
unsigned	add_internal_data (Data *const &data_pt, const bool &fd=true)
bool	internal_data_fd (const unsigned &i) const
void	exclude_internal_data_fd (const unsigned &i)
void	include_internal_data_fd (const unsigned &i)
void	clear_global_eqn_numbers ()
void	add_global_eqn_numbers (std::deque< unsigned long > const &global_eqn_numbers, std::deque< double * > const &global_dof_pt)
virtual void	assign_internal_and_external_local_eqn_numbers (const bool &store_local_dof_pt)
virtual void	assign_all_generic_local_eqn_numbers (const bool &store_local_dof_pt)
virtual void	assign_additional_local_eqn_numbers ()
int	internal_local_eqn (const unsigned &i, const unsigned &j) const
int	external_local_eqn (const unsigned &i, const unsigned &j)
virtual void	fill_in_contribution_to_residuals (Vector< double > &residuals)
void	fill_in_jacobian_from_internal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
void	fill_in_jacobian_from_internal_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
void	fill_in_jacobian_from_external_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
void	fill_in_jacobian_from_external_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
virtual void	update_before_internal_fd ()
virtual void	reset_after_internal_fd ()
virtual void	update_in_internal_fd (const unsigned &i)
virtual void	reset_in_internal_fd (const unsigned &i)
virtual void	update_before_external_fd ()
virtual void	reset_after_external_fd ()
virtual void	update_in_external_fd (const unsigned &i)
virtual void	reset_in_external_fd (const unsigned &i)
virtual void	fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)
virtual void	fill_in_contribution_to_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)
virtual void	fill_in_contribution_to_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)
virtual void	fill_in_contribution_to_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)
virtual void	fill_in_contribution_to_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)
virtual void	fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)
virtual void	fill_in_contribution_to_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)
virtual void	fill_in_contribution_to_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)
virtual void	fill_in_contribution_to_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)
Static Protected Attributes inherited from oomph::GeneralisedElement
static DenseMatrix< double >	Dummy_matrix
static std::deque< double * >	Dof_pt_deque

Constructor & Destructor Documentation

PeriodicOrbitBaseElement()

oomph::PeriodicOrbitBaseElement::PeriodicOrbitBaseElement ( )

inline

: GeneralisedElement() {}

Member Function Documentation

get_inner_product_matrix()

virtual void oomph::PeriodicOrbitBaseElement::get_inner_product_matrix ( DenseMatrix< double > &  inner_product )

inlinevirtual

Get the inner product matrix.

Reimplemented in ABCElement.

    {
      const unsigned n_dof = this->ndof();
      inner_product.initialise(0.0);
      for (unsigned i = 0; i < n_dof; i++)
      {
        inner_product(i, i) = 1.0;
      }
    }

References i, oomph::DenseMatrix< T >::initialise(), and oomph::GeneralisedElement::ndof().

Referenced by oomph::PeriodicOrbitEquations::fill_in_generic_residual_contribution_orbit().

get_non_external_ddofs_dt()

virtual void oomph::PeriodicOrbitBaseElement::get_non_external_ddofs_dt ( Vector< double > &  du_dt )

inlinevirtual

Interface to get the current value of the time derivative of all (internal and shared) unknowns

Reimplemented in ABCElement.

{}

Referenced by oomph::PeriodicOrbitEquations::fill_in_generic_residual_contribution_orbit().

get_non_external_dofs()

virtual void oomph::PeriodicOrbitBaseElement::get_non_external_dofs ( Vector< double > &  u )

inlinevirtual

Interface to get the current value of all (internal and shared) unknowns.

Reimplemented in ABCElement.

{}

Referenced by oomph::PeriodicOrbitEquations::fill_in_generic_residual_contribution_orbit().

spacetime_output()

virtual void oomph::PeriodicOrbitBaseElement::spacetime_output ( std::ostream &  outilfe, const unsigned &  Nplot, const double &  time = 0.0  )

inlinevirtual

Reimplemented in ABCElement.

    {
    }

Referenced by oomph::PeriodicOrbitEquations::orbit_output().

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The documentation for this class was generated from the following file:

• periodic_orbit_handler.h