Poisson problem on rotatable, refineable cubic brick mesh. More...

Inheritance diagram for TestPoissonProblem< ELEMENT >:

Public Member Functions
	TestPoissonProblem (const unsigned &angle, const unsigned &rotated_element, PoissonEquations< 3 >::PoissonSourceFctPt source_fct_pt)

	~TestPoissonProblem ()
	Destructor: close trace file. More...

RotatableRefineableCubicMesh< ELEMENT > *	mesh_pt ()

void	impose_specific_refinement (const unsigned &nrefine)
	Impose specific refinement on mesh (up to nrefine refinements) More...

void	actions_after_newton_solve ()
	Update the problem specs after solve (empty) More...

void	actions_before_newton_solve ()

void	doc_solution (DocInfo &doc_info)
	Doc the solution. More...

	TestPoissonProblem (const unsigned &angle, PoissonEquations< 3 >::PoissonSourceFctPt source_fct_pt)
	Constructor: Pass pointer to source function. More...

	~TestPoissonProblem ()
	Destructor: Empty. More...

TestRefineableCubicMesh< ELEMENT > *	mesh_pt ()

void	actions_after_newton_solve ()
	Update the problem specs after solve (empty) More...

void	actions_before_newton_solve ()

void	doc_solution (DocInfo &doc_info)
	Doc the solution. More...

Public Member Functions inherited from oomph::Problem
virtual void	debug_hook_fct (const unsigned &i)

void	set_analytic_dparameter (double *const &parameter_pt)

void	unset_analytic_dparameter (double *const &parameter_pt)

bool	is_dparameter_calculated_analytically (double *const &parameter_pt)

void	set_analytic_hessian_products ()

void	unset_analytic_hessian_products ()

bool	are_hessian_products_calculated_analytically ()

void	set_pinned_values_to_zero ()

bool	distributed () const

virtual void	actions_before_adapt ()

virtual void	actions_after_adapt ()
	Actions that are to be performed after a mesh adaptation. More...

OomphCommunicator *	communicator_pt ()
	access function to the oomph-lib communicator More...

const OomphCommunicator *	communicator_pt () const
	access function to the oomph-lib communicator, const version More...

	Problem ()

	Problem (const Problem &dummy)=delete
	Broken copy constructor. More...

void	operator= (const Problem &)=delete
	Broken assignment operator. More...

virtual	~Problem ()
	Virtual destructor to clean up memory. More...

Mesh *&	mesh_pt ()
	Return a pointer to the global mesh. More...

Mesh *const &	mesh_pt () const
	Return a pointer to the global mesh (const version) More...

Mesh *&	mesh_pt (const unsigned &imesh)

Mesh *const &	mesh_pt (const unsigned &imesh) const
	Return a pointer to the i-th submesh (const version) More...

unsigned	nsub_mesh () const
	Return number of submeshes. More...

unsigned	add_sub_mesh (Mesh *const &mesh_pt)

void	flush_sub_meshes ()

void	build_global_mesh ()

void	rebuild_global_mesh ()

LinearSolver *&	linear_solver_pt ()
	Return a pointer to the linear solver object. More...

LinearSolver *const &	linear_solver_pt () const
	Return a pointer to the linear solver object (const version) More...

LinearSolver *&	mass_matrix_solver_for_explicit_timestepper_pt ()

LinearSolver *	mass_matrix_solver_for_explicit_timestepper_pt () const

EigenSolver *&	eigen_solver_pt ()
	Return a pointer to the eigen solver object. More...

EigenSolver *const &	eigen_solver_pt () const
	Return a pointer to the eigen solver object (const version) More...

Time *&	time_pt ()
	Return a pointer to the global time object. More...

Time *	time_pt () const
	Return a pointer to the global time object (const version). More...

double &	time ()
	Return the current value of continuous time. More...

double	time () const
	Return the current value of continuous time (const version) More...

TimeStepper *&	time_stepper_pt ()

const TimeStepper *	time_stepper_pt () const

TimeStepper *&	time_stepper_pt (const unsigned &i)
	Return a pointer to the i-th timestepper. More...

ExplicitTimeStepper *&	explicit_time_stepper_pt ()
	Return a pointer to the explicit timestepper. More...

unsigned long	set_timestepper_for_all_data (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data=false)

virtual void	shift_time_values ()
	Shift all values along to prepare for next timestep. More...

AssemblyHandler *&	assembly_handler_pt ()
	Return a pointer to the assembly handler object. More...

AssemblyHandler *const &	assembly_handler_pt () const
	Return a pointer to the assembly handler object (const version) More...

double &	minimum_dt ()
	Access function to min timestep in adaptive timestepping. More...

double &	maximum_dt ()
	Access function to max timestep in adaptive timestepping. More...

unsigned &	max_newton_iterations ()
	Access function to max Newton iterations before giving up. More...

void	problem_is_nonlinear (const bool &prob_lin)
	Access function to Problem_is_nonlinear. More...

double &	max_residuals ()

bool &	time_adaptive_newton_crash_on_solve_fail ()
	Access function for Time_adaptive_newton_crash_on_solve_fail. More...

double &	newton_solver_tolerance ()

void	add_time_stepper_pt (TimeStepper *const &time_stepper_pt)

void	set_explicit_time_stepper_pt (ExplicitTimeStepper *const &explicit_time_stepper_pt)

void	initialise_dt (const double &dt)

void	initialise_dt (const Vector< double > &dt)

Data *&	global_data_pt (const unsigned &i)
	Return a pointer to the the i-th global data object. More...

void	add_global_data (Data *const &global_data_pt)

void	flush_global_data ()

LinearAlgebraDistribution *const &	dof_distribution_pt () const
	Return the pointer to the dof distribution (read-only) More...

unsigned long	ndof () const
	Return the number of dofs. More...

unsigned	ntime_stepper () const
	Return the number of time steppers. More...

unsigned	nglobal_data () const
	Return the number of global data values. More...

unsigned	self_test ()
	Self-test: Check meshes and global data. Return 0 for OK. More...

void	enable_store_local_dof_pt_in_elements ()

void	disable_store_local_dof_pt_in_elements ()

unsigned long	assign_eqn_numbers (const bool &assign_local_eqn_numbers=true)

void	describe_dofs (std::ostream &out= *(oomph_info.stream_pt())) const

void	enable_discontinuous_formulation ()

void	disable_discontinuous_formulation ()

void	get_dofs (DoubleVector &dofs) const

void	get_dofs (const unsigned &t, DoubleVector &dofs) const
	Return vector of the t'th history value of all dofs. More...

void	set_dofs (const DoubleVector &dofs)
	Set the values of the dofs. More...

void	set_dofs (const unsigned &t, DoubleVector &dofs)
	Set the history values of the dofs. More...

void	set_dofs (const unsigned &t, Vector< double * > &dof_pt)

void	add_to_dofs (const double &lambda, const DoubleVector &increment_dofs)
	Add lambda x incremenet_dofs[l] to the l-th dof. More...

double *	global_dof_pt (const unsigned &i)

double &	dof (const unsigned &i)
	i-th dof in the problem More...

double	dof (const unsigned &i) const
	i-th dof in the problem (const version) More...

double *&	dof_pt (const unsigned &i)
	Pointer to i-th dof in the problem. More...

double *	dof_pt (const unsigned &i) const
	Pointer to i-th dof in the problem (const version) More...

virtual void	get_inverse_mass_matrix_times_residuals (DoubleVector &Mres)

virtual void	get_dvaluesdt (DoubleVector &f)

virtual void	get_residuals (DoubleVector &residuals)
	Get the total residuals Vector for the problem. More...

virtual void	get_jacobian (DoubleVector &residuals, DenseDoubleMatrix &jacobian)

virtual void	get_jacobian (DoubleVector &residuals, CRDoubleMatrix &jacobian)

virtual void	get_jacobian (DoubleVector &residuals, CCDoubleMatrix &jacobian)

virtual void	get_jacobian (DoubleVector &residuals, SumOfMatrices &jacobian)

void	get_fd_jacobian (DoubleVector &residuals, DenseMatrix< double > &jacobian)
	Get the full Jacobian by finite differencing. More...

void	get_derivative_wrt_global_parameter (double *const &parameter_pt, DoubleVector &result)

void	get_hessian_vector_products (DoubleVectorWithHaloEntries const &Y, Vector< DoubleVectorWithHaloEntries > const &C, Vector< DoubleVectorWithHaloEntries > &product)

void	solve_eigenproblem (const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, Vector< DoubleVector > &eigenvector, const bool &steady=true)
	Solve the eigenproblem. More...

void	solve_eigenproblem (const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, const bool &steady=true)

virtual void	get_eigenproblem_matrices (CRDoubleMatrix &mass_matrix, CRDoubleMatrix &main_matrix, const double &shift=0.0)

void	assign_eigenvector_to_dofs (DoubleVector &eigenvector)
	Assign the eigenvector passed to the function to the dofs. More...

void	add_eigenvector_to_dofs (const double &epsilon, const DoubleVector &eigenvector)

void	store_current_dof_values ()
	Store the current values of the degrees of freedom. More...

void	restore_dof_values ()
	Restore the stored values of the degrees of freedom. More...

void	enable_jacobian_reuse ()

void	disable_jacobian_reuse ()
	Disable recycling of Jacobian in Newton iteration. More...

bool	jacobian_reuse_is_enabled ()
	Is recycling of Jacobian in Newton iteration enabled? More...

bool &	use_predictor_values_as_initial_guess ()

void	newton_solve ()
	Use Newton method to solve the problem. More...

void	enable_globally_convergent_newton_method ()
	enable globally convergent Newton method More...

void	disable_globally_convergent_newton_method ()
	disable globally convergent Newton method More...

void	newton_solve (unsigned const &max_adapt)

void	steady_newton_solve (unsigned const &max_adapt=0)

void	copy (Problem *orig_problem_pt)

virtual Problem *	make_copy ()

virtual void	read (std::ifstream &restart_file, bool &unsteady_restart)

virtual void	read (std::ifstream &restart_file)

virtual void	dump (std::ofstream &dump_file) const

void	dump (const std::string &dump_file_name) const

void	delete_all_external_storage ()

virtual void	symmetrise_eigenfunction_for_adaptive_pitchfork_tracking ()

double *	bifurcation_parameter_pt () const

void	get_bifurcation_eigenfunction (Vector< DoubleVector > &eigenfunction)

void	activate_fold_tracking (double *const &parameter_pt, const bool &block_solve=true)

void	activate_bifurcation_tracking (double *const &parameter_pt, const DoubleVector &eigenvector, const bool &block_solve=true)

void	activate_bifurcation_tracking (double *const &parameter_pt, const DoubleVector &eigenvector, const DoubleVector &normalisation, const bool &block_solve=true)

void	activate_pitchfork_tracking (double *const &parameter_pt, const DoubleVector &symmetry_vector, const bool &block_solve=true)

void	activate_hopf_tracking (double *const &parameter_pt, const bool &block_solve=true)

void	activate_hopf_tracking (double *const &parameter_pt, const double &omega, const DoubleVector &null_real, const DoubleVector &null_imag, const bool &block_solve=true)

void	deactivate_bifurcation_tracking ()

void	reset_assembly_handler_to_default ()
	Reset the system to the standard non-augemented state. More...

double	arc_length_step_solve (double *const &parameter_pt, const double &ds, const unsigned &max_adapt=0)

double	arc_length_step_solve (Data *const &data_pt, const unsigned &data_index, const double &ds, const unsigned &max_adapt=0)

void	reset_arc_length_parameters ()

int &	sign_of_jacobian ()

void	explicit_timestep (const double &dt, const bool &shift_values=true)
	Take an explicit timestep of size dt. More...

void	unsteady_newton_solve (const double &dt)

void	unsteady_newton_solve (const double &dt, const bool &shift_values)

void	unsteady_newton_solve (const double &dt, const unsigned &max_adapt, const bool &first, const bool &shift=true)

double	doubly_adaptive_unsteady_newton_solve (const double &dt, const double &epsilon, const unsigned &max_adapt, const bool &first, const bool &shift=true)

double	doubly_adaptive_unsteady_newton_solve (const double &dt, const double &epsilon, const unsigned &max_adapt, const unsigned &suppress_resolve_after_spatial_adapt_flag, const bool &first, const bool &shift=true)

double	adaptive_unsteady_newton_solve (const double &dt_desired, const double &epsilon)

double	adaptive_unsteady_newton_solve (const double &dt_desired, const double &epsilon, const bool &shift_values)

void	assign_initial_values_impulsive ()

void	assign_initial_values_impulsive (const double &dt)

void	calculate_predictions ()
	Calculate predictions. More...

void	enable_mass_matrix_reuse ()

void	disable_mass_matrix_reuse ()

bool	mass_matrix_reuse_is_enabled ()
	Return whether the mass matrix is being reused. More...

void	refine_uniformly (const Vector< unsigned > &nrefine_for_mesh)

void	refine_uniformly (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)

void	refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh)

void	refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)

void	refine_uniformly (DocInfo &doc_info)

void	refine_uniformly_and_prune (DocInfo &doc_info)

void	refine_uniformly ()

void	refine_uniformly (const unsigned &i_mesh, DocInfo &doc_info)
	Do uniform refinement for submesh i_mesh with documentation. More...

void	refine_uniformly (const unsigned &i_mesh)
	Do uniform refinement for submesh i_mesh without documentation. More...

void	p_refine_uniformly (const Vector< unsigned > &nrefine_for_mesh)

void	p_refine_uniformly (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)

void	p_refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh)

void	p_refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)

void	p_refine_uniformly (DocInfo &doc_info)

void	p_refine_uniformly_and_prune (DocInfo &doc_info)

void	p_refine_uniformly ()

void	p_refine_uniformly (const unsigned &i_mesh, DocInfo &doc_info)
	Do uniform p-refinement for submesh i_mesh with documentation. More...

void	p_refine_uniformly (const unsigned &i_mesh)
	Do uniform p-refinement for submesh i_mesh without documentation. More...

void	refine_selected_elements (const Vector< unsigned > &elements_to_be_refined)

void	refine_selected_elements (const Vector< RefineableElement * > &elements_to_be_refined_pt)

void	refine_selected_elements (const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined)

void	refine_selected_elements (const unsigned &i_mesh, const Vector< RefineableElement * > &elements_to_be_refined_pt)

void	refine_selected_elements (const Vector< Vector< unsigned >> &elements_to_be_refined)

void	refine_selected_elements (const Vector< Vector< RefineableElement * >> &elements_to_be_refined_pt)

void	p_refine_selected_elements (const Vector< unsigned > &elements_to_be_refined)

void	p_refine_selected_elements (const Vector< PRefineableElement * > &elements_to_be_refined_pt)

void	p_refine_selected_elements (const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined)

void	p_refine_selected_elements (const unsigned &i_mesh, const Vector< PRefineableElement * > &elements_to_be_refined_pt)

void	p_refine_selected_elements (const Vector< Vector< unsigned >> &elements_to_be_refined)

void	p_refine_selected_elements (const Vector< Vector< PRefineableElement * >> &elements_to_be_refined_pt)

unsigned	unrefine_uniformly ()

unsigned	unrefine_uniformly (const unsigned &i_mesh)

void	p_unrefine_uniformly (DocInfo &doc_info)

void	p_unrefine_uniformly (const unsigned &i_mesh, DocInfo &doc_info)
	Do uniform p-unrefinement for submesh i_mesh without documentation. More...

void	adapt (unsigned &n_refined, unsigned &n_unrefined)

void	adapt ()

void	p_adapt (unsigned &n_refined, unsigned &n_unrefined)

void	p_adapt ()

void	adapt_based_on_error_estimates (unsigned &n_refined, unsigned &n_unrefined, Vector< Vector< double >> &elemental_error)

void	adapt_based_on_error_estimates (Vector< Vector< double >> &elemental_error)

void	get_all_error_estimates (Vector< Vector< double >> &elemental_error)

void	doc_errors (DocInfo &doc_info)
	Get max and min error for all elements in submeshes. More...

void	doc_errors ()
	Get max and min error for all elements in submeshes. More...

void	enable_info_in_newton_solve ()

void	disable_info_in_newton_solve ()
	Disable the output of information when in the newton solver. More...

Public Member Functions inherited from oomph::ExplicitTimeSteppableObject
	ExplicitTimeSteppableObject ()
	Empty constructor. More...

	ExplicitTimeSteppableObject (const ExplicitTimeSteppableObject &)=delete
	Broken copy constructor. More...

void	operator= (const ExplicitTimeSteppableObject &)=delete
	Broken assignment operator. More...

virtual	~ExplicitTimeSteppableObject ()
	Empty destructor. More...

virtual void	actions_before_explicit_stage ()

virtual void	actions_after_explicit_stage ()

Private Attributes
PoissonEquations< 3 >::PoissonSourceFctPt	Source_fct_pt
	Pointer to source function. More...

ofstream	Trace_file
	Trace file. More...

Additional Inherited Members
Public Types inherited from oomph::Problem
typedef void(*	SpatialErrorEstimatorFctPt) (Mesh *&mesh_pt, Vector< double > &elemental_error)
	Function pointer for spatial error estimator. More...

typedef void(*	SpatialErrorEstimatorWithDocFctPt) (Mesh *&mesh_pt, Vector< double > &elemental_error, DocInfo &doc_info)
	Function pointer for spatial error estimator with doc. More...

Public Attributes inherited from oomph::Problem
bool	Shut_up_in_newton_solve

Static Public Attributes inherited from oomph::Problem
static bool	Suppress_warning_about_actions_before_read_unstructured_meshes

Protected Types inherited from oomph::Problem
enum	Assembly_method { Perform_assembly_using_vectors_of_pairs , Perform_assembly_using_two_vectors , Perform_assembly_using_maps , Perform_assembly_using_lists , Perform_assembly_using_two_arrays }
	Enumerated flags to determine which sparse assembly method is used. More...

Protected Member Functions inherited from oomph::Problem
unsigned	setup_element_count_per_dof ()

virtual void	sparse_assemble_row_or_column_compressed (Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag)

virtual void	actions_before_newton_convergence_check ()

virtual void	actions_before_newton_step ()

virtual void	actions_after_newton_step ()

virtual void	actions_before_implicit_timestep ()

virtual void	actions_after_implicit_timestep ()

virtual void	actions_after_implicit_timestep_and_error_estimation ()

virtual void	actions_before_explicit_timestep ()
	Actions that should be performed before each explicit time step. More...

virtual void	actions_after_explicit_timestep ()
	Actions that should be performed after each explicit time step. More...

virtual void	actions_before_read_unstructured_meshes ()

virtual void	actions_after_read_unstructured_meshes ()

virtual void	actions_after_change_in_global_parameter (double *const &parameter_pt)

virtual void	actions_after_change_in_bifurcation_parameter ()

virtual void	actions_after_parameter_increase (double *const &parameter_pt)

double &	dof_derivative (const unsigned &i)

double &	dof_current (const unsigned &i)

virtual void	set_initial_condition ()

virtual double	global_temporal_error_norm ()

unsigned	newton_solve_continuation (double *const &parameter_pt)

unsigned	newton_solve_continuation (double *const &parameter_pt, DoubleVector &z)

void	calculate_continuation_derivatives (double *const &parameter_pt)

void	calculate_continuation_derivatives (const DoubleVector &z)

void	calculate_continuation_derivatives_fd (double *const &parameter_pt)

bool	does_pointer_correspond_to_problem_data (double *const &parameter_pt)

void	set_consistent_pinned_values_for_continuation ()

Protected Attributes inherited from oomph::Problem
Vector< Problem * >	Copy_of_problem_pt

std::map< double *, bool >	Calculate_dparameter_analytic

bool	Calculate_hessian_products_analytic

LinearAlgebraDistribution *	Dof_distribution_pt

Vector< double * >	Dof_pt
	Vector of pointers to dofs. More...

DoubleVectorWithHaloEntries	Element_count_per_dof

double	Relaxation_factor

double	Newton_solver_tolerance

unsigned	Max_newton_iterations
	Maximum number of Newton iterations. More...

unsigned	Nnewton_iter_taken

Vector< double >	Max_res
	Maximum residuals at start and after each newton iteration. More...

double	Max_residuals

bool	Time_adaptive_newton_crash_on_solve_fail

bool	Jacobian_reuse_is_enabled
	Is re-use of Jacobian in Newton iteration enabled? Default: false. More...

bool	Jacobian_has_been_computed

bool	Problem_is_nonlinear

bool	Pause_at_end_of_sparse_assembly

bool	Doc_time_in_distribute

unsigned	Sparse_assembly_method

unsigned	Sparse_assemble_with_arrays_initial_allocation

unsigned	Sparse_assemble_with_arrays_allocation_increment

Vector< Vector< unsigned > >	Sparse_assemble_with_arrays_previous_allocation

double	Numerical_zero_for_sparse_assembly

double	FD_step_used_in_get_hessian_vector_products

bool	Mass_matrix_reuse_is_enabled

bool	Mass_matrix_has_been_computed

bool	Discontinuous_element_formulation

double	Minimum_dt
	Minimum desired dt: if dt falls below this value, exit. More...

double	Maximum_dt
	Maximum desired dt. More...

double	DTSF_max_increase

double	DTSF_min_decrease

double	Minimum_dt_but_still_proceed

bool	Scale_arc_length
	Boolean to control whether arc-length should be scaled. More...

double	Desired_proportion_of_arc_length
	Proportion of the arc-length to taken by the parameter. More...

double	Theta_squared

int	Sign_of_jacobian
	Storage for the sign of the global Jacobian. More...

double	Continuation_direction

double	Parameter_derivative
	Storage for the derivative of the global parameter wrt arc-length. More...

double	Parameter_current
	Storage for the present value of the global parameter. More...

bool	Use_continuation_timestepper
	Boolean to control original or new storage of dof stuff. More...

unsigned	Dof_derivative_offset

unsigned	Dof_current_offset

Vector< double >	Dof_derivative
	Storage for the derivative of the problem variables wrt arc-length. More...

Vector< double >	Dof_current
	Storage for the present values of the variables. More...

double	Ds_current
	Storage for the current step value. More...

unsigned	Desired_newton_iterations_ds

double	Minimum_ds
	Minimum desired value of arc-length. More...

bool	Bifurcation_detection
	Boolean to control bifurcation detection via determinant of Jacobian. More...

bool	Bisect_to_find_bifurcation
	Boolean to control wheter bisection is used to located bifurcation. More...

bool	First_jacobian_sign_change
	Boolean to indicate whether a sign change has occured in the Jacobian. More...

bool	Arc_length_step_taken
	Boolean to indicate whether an arc-length step has been taken. More...

bool	Use_finite_differences_for_continuation_derivatives

OomphCommunicator *	Communicator_pt
	The communicator for this problem. More...

bool	Always_take_one_newton_step

double	Timestep_reduction_factor_after_nonconvergence

bool	Keep_temporal_error_below_tolerance

Static Protected Attributes inherited from oomph::Problem
static ContinuationStorageScheme	Continuation_time_stepper
	Storage for the single static continuation timestorage object. More...

Detailed Description

template<class ELEMENT>
class TestPoissonProblem< ELEMENT >

Poisson problem on rotatable, refineable cubic brick mesh.

Poisson problem in refineable eighth of a sphere mesh.

///////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////// /////////////////////////////////////////////////////////////////////

Constructor & Destructor Documentation

◆ TestPoissonProblem() [1/2]

template<class ELEMENT >

TestPoissonProblem< ELEMENT >::TestPoissonProblem	(	const unsigned &	angle,
		const unsigned &	rotated_element,
		PoissonEquations< 3 >::PoissonSourceFctPt	source_fct_pt
	)

Constructor: Pass index of rotation, number of rotated element, and pointer to source function.

◆ ~TestPoissonProblem() [1/2]

template<class ELEMENT >

TestPoissonProblem< ELEMENT >::~TestPoissonProblem ( )

inline

Destructor: close trace file.

   {
    Trace_file.close();
   }

References oomph::Problem_Parameter::Trace_file.

◆ TestPoissonProblem() [2/2]

template<class ELEMENT >

TestPoissonProblem< ELEMENT >::TestPoissonProblem	(	const unsigned &	angle,
		PoissonEquations< 3 >::PoissonSourceFctPt	source_fct_pt
	)

Constructor: Pass pointer to source function.

◆ ~TestPoissonProblem() [2/2]

template<class ELEMENT >

TestPoissonProblem< ELEMENT >::~TestPoissonProblem ( )

inline

Destructor: Empty.

691 {}

Member Function Documentation

◆ actions_after_newton_solve() [1/2]

template<class ELEMENT >

void TestPoissonProblem< ELEMENT >::actions_after_newton_solve ( )

inlinevirtual

Update the problem specs after solve (empty)

Reimplemented from oomph::Problem.

557 {}

◆ actions_after_newton_solve() [2/2]

template<class ELEMENT >

void TestPoissonProblem< ELEMENT >::actions_after_newton_solve ( )

inlinevirtual

Update the problem specs after solve (empty)

Reimplemented from oomph::Problem.

701 {}

◆ actions_before_newton_solve() [1/2]

template<class ELEMENT >

void TestPoissonProblem< ELEMENT >::actions_before_newton_solve ( )

inlinevirtual

Update the problem specs before solve: Set Dirchlet boundary conditions from exact solution.

Reimplemented from oomph::Problem.

  {
   //Loop over the boundaries
   unsigned num_bound = mesh_pt()->nboundary();
   for(unsigned ibound=0;ibound<num_bound;ibound++)
    {
     // Loop over the nodes on boundary
     unsigned num_nod=mesh_pt()->nboundary_node(ibound);
    for (unsigned inod=0;inod<num_nod;inod++)
     {
      Node* nod_pt=mesh_pt()->boundary_node_pt(ibound,inod);
      double u;
      Vector<double> x(3);
      x[0]=nod_pt->x(0);
      x[1]=nod_pt->x(1);
      x[2]=nod_pt->x(2);
      TanhSolnForPoisson::get_exact_u(x,u);
      nod_pt->set_value(0,u);
     }
    }
  }

References TanhSolnForPoisson::get_exact_u(), oomph::Data::set_value(), plotDoE::x, and oomph::Node::x().

◆ actions_before_newton_solve() [2/2]

template<class ELEMENT >

void TestPoissonProblem< ELEMENT >::actions_before_newton_solve ( )

inlinevirtual

Update the problem specs before solve: Set Dirchlet boundary conditions from exact solution.

Reimplemented from oomph::Problem.

  {
   //Loop over the boundaries
   unsigned num_bound = mesh_pt()->nboundary();
   for(unsigned ibound=0;ibound<num_bound;ibound++)
    {
     // Loop over the nodes on boundary
     unsigned num_nod=mesh_pt()->nboundary_node(ibound);
    for (unsigned inod=0;inod<num_nod;inod++)
     {
      Node* nod_pt=mesh_pt()->boundary_node_pt(ibound,inod);
      double u;
      Vector<double> x(3);
      x[0]=nod_pt->x(0);
      x[1]=nod_pt->x(1);
      x[2]=nod_pt->x(2);
      TanhSolnForPoisson::get_exact_u(x,u);
      nod_pt->set_value(0,u);
     }
    }
  }

References TanhSolnForPoisson::get_exact_u(), oomph::Data::set_value(), plotDoE::x, and oomph::Node::x().

◆ doc_solution() [1/2]

template<class ELEMENT >

void TestPoissonProblem< ELEMENT >::doc_solution ( DocInfo & doc_info )

Doc the solution.

 {
  ofstream some_file,some_file2;
  char filename[100];
  
  
  
  unsigned success_flag=0;
  
  // Check for repeated nodes in mesh
  if (mesh_pt()->check_for_repeated_nodes()!=0) success_flag=1;
   
  // Do octree self test
  if (dynamic_cast<OcTreeForest*>(mesh_pt()->forest_pt())->self_test()!=0)
   {
    success_flag=1;
   }
  
  // Doc success flag to trace file
  Trace_file  << success_flag << std::endl; 
  
  
  // Limited output if run as self test
  if ((CommandLineArgs::Argc==1)||(doc_info.number()==0))
   {
    // Number of plot points
    unsigned npts;
    npts=5; 
    
    // Doc orientation of the root elements
    sprintf(filename,"%s/orientation%i.dat",doc_info.directory().c_str(),
            doc_info.number());
    some_file.open(filename);
   
    sprintf(filename,"%s/root_elements%i.dat",doc_info.directory().c_str(),
            doc_info.number());
    some_file2.open(filename);
   
    // Loop over octree roots to display orientation
    Vector<double> s(3);
    Vector<double> x_centre(3),x_end(3);
    unsigned ntree=mesh_pt()->forest_pt()->ntree();
    for (unsigned i=0;i<ntree;i++)
     {
      RefineableQElement<3>* el_pt=
       dynamic_cast<RefineableQElement<3>*>(
        mesh_pt()->forest_pt()->tree_pt(i)->object_pt());  
     
      // Centre of element
      s[0]=0.0;
      s[1]=0.0;
      s[2]=0.0;
      el_pt->interpolated_x(s,x_centre);
     
     
      // End of "up" in  element
      s[0]=0.0;
      s[1]=1.0;
      s[2]=0.0;
      el_pt->interpolated_x(s,x_end);
     
      some_file << "ZONE I=1, C=\"RED\"" << std::endl;
      some_file << x_centre[0] << " " 
                << x_centre[1] << " " 
                << x_centre[2] << " " 
                << x_end[0]-x_centre[0] << " " 
                << x_end[1]-x_centre[1] << " " 
                << x_end[2]-x_centre[2] << " " << std::endl;
     
      // End of "right" in  element
      s[0]=1.0;
      s[1]=0.0;
      s[2]=0.0;
      el_pt->interpolated_x(s,x_end);
     
      some_file << "ZONE I=1, C=\"GREEN\"" << std::endl;
      some_file << x_centre[0] << " " 
                << x_centre[1] << " " 
                << x_centre[2] << " " 
                << x_end[0]-x_centre[0] << " " 
                << x_end[1]-x_centre[1] << " " 
                << x_end[2]-x_centre[2] << " " << std::endl;
     
      el_pt->output_corners(some_file2,"BLUE");
     }
    some_file.close();
    some_file2.close();
   
    // Doc neighbours
    doc_info.enable_doc();
    mesh_pt()->forest_pt()->check_all_neighbours(doc_info);
   
   
    // Output solution 
    //-----------------
    //mesh_pt()->sort_elements();
    sprintf(filename,"%s/soln%i.dat",doc_info.directory().c_str(),
            doc_info.number());
    some_file.open(filename);
    mesh_pt()->output(some_file,npts);
    some_file.close();
   
  }
  
 } // end of doc

References oomph::CommandLineArgs::Argc, oomph::DocInfo::directory(), oomph::DocInfo::enable_doc(), MergeRestartFiles::filename, i, oomph::FiniteElement::interpolated_x(), oomph::DocInfo::number(), oomph::RefineableQElement< 3 >::output_corners(), s, oomph::self_test(), and oomph::Problem_Parameter::Trace_file.

◆ doc_solution() [2/2]

template<class ELEMENT >

void TestPoissonProblem< ELEMENT >::doc_solution ( DocInfo & doc_info )

Doc the solution.

◆ impose_specific_refinement()

template<class ELEMENT >

void TestPoissonProblem< ELEMENT >::impose_specific_refinement ( const unsigned & nrefine )

Impose specific refinement on mesh (up to nrefine refinements)

Impose a specific refinement pattern with up to 3 non-uniform refinements that produces all sorts of neighbours. Triply refined next to unrefined, double refined next to triply refined etc.

 {
  
  // First four block elements get triply refined
  set<RefineableElement*> triply_refined_el_pt;
  if (nrefine>2)
   {
    triply_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                                 mesh_pt()->element_pt(7)));
    triply_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                                 mesh_pt()->element_pt(8)));
    triply_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                                 mesh_pt()->element_pt(16)));
    triply_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                                 mesh_pt()->element_pt(17)));
   }
  
  
  // First four block elements get doubly refined
  set<RefineableElement*> doubly_refined_el_pt;
  if (nrefine>1)
   {
    doubly_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                                 mesh_pt()->element_pt(0)));
    doubly_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                                 mesh_pt()->element_pt(1)));
    doubly_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                                 mesh_pt()->element_pt(3)));
    doubly_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                                 mesh_pt()->element_pt(4)));
   }
  
  
  // Next four block elements get singly refined
  set<RefineableElement*> singly_refined_el_pt;
  singly_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                               mesh_pt()->element_pt(2)));
  singly_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                               mesh_pt()->element_pt(5)));
  singly_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                               mesh_pt()->element_pt(11)));
  singly_refined_el_pt.insert(dynamic_cast<RefineableElement*>(
                               mesh_pt()->element_pt(14)));
  
  // Loop over refinement levels
  Vector<RefineableElement*> ref_el_pt;
  for (unsigned i=0;i<nrefine;i++)
   {
    
    // Form Vector of elements that have to be refined
    ref_el_pt.resize(0);
    typedef set<RefineableElement*>::iterator IT;
    
    // Triple refinement
    for (IT it=triply_refined_el_pt.begin();
         it!=triply_refined_el_pt.end();
         ++it)
     {
      ref_el_pt.push_back(*it);
     }
    
    
    // Double refinement
    if (i<2)
     {
      for (IT it=doubly_refined_el_pt.begin();
           it!=doubly_refined_el_pt.end();
           ++it)
       {
        ref_el_pt.push_back(*it);
       }
     }
    
    // Only add singly refined ones during first round
    if (i==0)
     {
      for (IT it=singly_refined_el_pt.begin();
           it!=singly_refined_el_pt.end();
           ++it)
       {
        ref_el_pt.push_back(*it);
       }
      
      // Add central element
      ref_el_pt.push_back(dynamic_cast<RefineableElement*>(
                           mesh_pt()->element_pt(13)));
     }
    
    // Total number of elements to be refined at least once
    unsigned n_total=ref_el_pt.size();
    
    
    // Refine these elements
    refine_selected_elements(ref_el_pt);
    
    
    // Now that they've been refined, remove them from the set
    // of elements that have to be refined next time but add
    // their sons instead
    Vector<RefineableQElement<3>*> aux_el_pt;
    for (IT it=triply_refined_el_pt.begin();
           it!=triply_refined_el_pt.end();
           ++it)
     {
      aux_el_pt.push_back(dynamic_cast<RefineableQElement<3>*>(*it));
     }
  
    unsigned nr=aux_el_pt.size();
    for (unsigned ii=0;ii<nr;ii++)
     {
      // Add sons
      for (unsigned s=0;s<8;s++)
       {
        triply_refined_el_pt.insert(aux_el_pt[ii]->octree_pt()->
                                    son_pt(s)->object_pt());
       }
      // Remove element itself
      triply_refined_el_pt.erase(aux_el_pt[ii]);
     }
    
  
    
    if (i<2)
     {
  
      // Now that they've been refined, remove them from the set
      // of elements that have to be refined next time but add
      // their sons instead
      aux_el_pt.resize(0);
      for (IT it=doubly_refined_el_pt.begin();
           it!=doubly_refined_el_pt.end();
           ++it)
       {
        aux_el_pt.push_back(dynamic_cast<RefineableQElement<3>*>(*it));
       }
      
      nr=aux_el_pt.size();
      for (unsigned ii=0;ii<nr;ii++)
       {
        // Add sons
        for (unsigned s=0;s<8;s++)
         {
          doubly_refined_el_pt.insert(aux_el_pt[ii]->octree_pt()->
                                      son_pt(s)->object_pt());
         }
        // Remove element itself
        doubly_refined_el_pt.erase(aux_el_pt[ii]);
       }
      // Finally: Last son in central element
      doubly_refined_el_pt.insert(dynamic_cast<RefineableQElement<3>*>(
                                   ref_el_pt[n_total-1])->octree_pt()->
                                  son_pt(7)->object_pt());
     }   
   }
 }

References i, and s.

◆ mesh_pt() [1/2]

template<class ELEMENT >

RotatableRefineableCubicMesh<ELEMENT>* TestPoissonProblem< ELEMENT >::mesh_pt ( )

inline

Overload generic access function by one that returns a pointer to the specific mesh

   {
    return dynamic_cast<RotatableRefineableCubicMesh<ELEMENT>*>(
     Problem::mesh_pt());
   }

References oomph::Problem::mesh_pt().

◆ mesh_pt() [2/2]

template<class ELEMENT >

TestRefineableCubicMesh<ELEMENT>* TestPoissonProblem< ELEMENT >::mesh_pt ( )

inline

Overload generic access function by one that returns a pointer to the specific mesh

   {
    return dynamic_cast<TestRefineableCubicMesh<ELEMENT>*>(Problem::mesh_pt());
   }

References oomph::Problem::mesh_pt().

Member Data Documentation

◆ Source_fct_pt

template<class ELEMENT >

PoissonEquations< 3 >::PoissonSourceFctPt TestPoissonProblem< ELEMENT >::Source_fct_pt

private

Pointer to source function.

◆ Trace_file

template<class ELEMENT >

ofstream TestPoissonProblem< ELEMENT >::Trace_file

private

Trace file.

The documentation for this class was generated from the following files:

Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

template<class ELEMENT> class TestPoissonProblem< ELEMENT >

Constructor & Destructor Documentation

◆ TestPoissonProblem() [1/2]

◆ ~TestPoissonProblem() [1/2]

◆ TestPoissonProblem() [2/2]

◆ ~TestPoissonProblem() [2/2]

Member Function Documentation

◆ actions_after_newton_solve() [1/2]

◆ actions_after_newton_solve() [2/2]

◆ actions_before_newton_solve() [1/2]

◆ actions_before_newton_solve() [2/2]

◆ doc_solution() [1/2]

◆ doc_solution() [2/2]

◆ impose_specific_refinement()

◆ mesh_pt() [1/2]

◆ mesh_pt() [2/2]

Member Data Documentation

◆ Source_fct_pt

◆ Trace_file

template<class ELEMENT>
class TestPoissonProblem< ELEMENT >