#include <algorithm>
#include <limits.h>
#include <cstring>
#include "oomph_utilities.h"
#include "Vector.h"
#include "matrices.h"

Namespaces
	oomph
	DRAIG: Change all instances of (SPATIAL_DIM) to (DIM-1).

	oomph::ANSIEscapeCode

	oomph::DebugHelpers

	oomph::SecondInvariantHelper

	oomph::BrokenCopy

	oomph::CumulativeTimings
	Namespace for global (cumulative) timings.

	oomph::StringConversion

	oomph::CommandLineArgs
	Namespace for command line arguments.

	oomph::ObsoleteCode
	Namespace for flagging up obsolete parts of the code.

	oomph::TecplotNames
	Namespace for tecplot stuff.

	oomph::PauseFlags
	Namespace for pause() command.

	oomph::TimingHelpers
	Helper for recording execution time.

	oomph::MemoryUsage

Functions
void	oomph::ANSIEscapeCode::set_text_effect (std::string text_effect)

std::string	oomph::DebugHelpers::debug_string (const std::string &filename, const int &line, const bool &make_new_line)

double	oomph::SecondInvariantHelper::second_invariant (const DenseMatrix< double > &tensor)
	Compute second invariant of tensor. More...

void	oomph::BrokenCopy::broken_assign (const std::string &class_name)
	Issue error message and terminate execution. More...

void	oomph::BrokenCopy::broken_copy (const std::string &class_name)
	Issue error message and terminate execution. More...

void	oomph::CumulativeTimings::start (const unsigned &i)
	(Re-)start i-th timer More...

void	oomph::CumulativeTimings::halt (const unsigned &i)
	Halt i-th timer. More...

double	oomph::CumulativeTimings::cumulative_time (const unsigned &i)
	Report time accumulated by i-th timer. More...

void	oomph::CumulativeTimings::reset (const unsigned &i)
	Reset i-th timer. More...

void	oomph::CumulativeTimings::reset ()
	Reset all timers. More...

void	oomph::CumulativeTimings::set_ntimers (const unsigned &ntimers)
	Set number of timings that can be recorded in parallel. More...

std::string	oomph::StringConversion::to_lower (const std::string &input)
	Convert a string to lower case (outputs a copy). More...

std::string	oomph::StringConversion::to_upper (const std::string &input)
	Convert a string to upper case (outputs a copy). More...

void	oomph::StringConversion::split_string (const std::string &s, char delim, Vector< std::string > &elems)

Vector< std::string >	oomph::StringConversion::split_string (const std::string &s, char delim)

void	oomph::CommandLineArgs::setup (int argc, char **argv)
	Set values. More...

void	oomph::CommandLineArgs::output ()
	Doc the command line arguments. More...

void	oomph::CommandLineArgs::specify_command_line_flag (const std::string &command_line_flag, const std::string &doc)
	Specify possible argument-free command line flag. More...

void	oomph::CommandLineArgs::specify_command_line_flag (const std::string &command_line_flag, double *arg_pt, const std::string &doc)

void	oomph::CommandLineArgs::specify_command_line_flag (const std::string &command_line_flag, int *arg_pt, const std::string &doc)

void	oomph::CommandLineArgs::specify_command_line_flag (const std::string &command_line_flag, unsigned *arg_pt, const std::string &doc)

void	oomph::CommandLineArgs::specify_command_line_flag (const std::string &command_line_flag, std::string *arg_pt, const std::string &doc)

bool	oomph::CommandLineArgs::command_line_flag_has_been_set (const std::string &flag)

void	oomph::CommandLineArgs::doc_all_flags (std::ostream &outstream)
	Document the values of all flags (specified or not). More...

void	oomph::CommandLineArgs::doc_specified_flags ()
	Document specified command line flags. More...

void	oomph::CommandLineArgs::doc_available_flags ()
	Document available command line flags. More...

void	oomph::CommandLineArgs::check_arg_index (const int &argc, const int &arg_index)
	Helper function to check if command line index is legal. More...

void	oomph::CommandLineArgs::parse_and_assign (int argc, char *argv[], const bool &throw_on_unrecognised_args)

void	oomph::CommandLineArgs::parse_and_assign (const bool &throw_on_unrecognised_args)

void	oomph::ObsoleteCode::obsolete ()
	Output warning message. More...

void	oomph::ObsoleteCode::obsolete (const std::string &message)
	Ouput a warning message with a string argument. More...

void	oomph::TecplotNames::setup ()
	Setup namespace. More...

void	oomph::pause (std::string message)
	Pause and display message. More...

double	oomph::TimingHelpers::timer ()
	returns the time in seconds after some point in past More...

std::string	oomph::TimingHelpers::convert_secs_to_formatted_string (const double &time_in_sec)

void	oomph::MemoryUsage::empty_my_memory_usage_file ()

void	oomph::MemoryUsage::empty_total_memory_usage_file ()

void	oomph::MemoryUsage::doc_total_memory_usage (const std::string &prefix_string)

void	oomph::MemoryUsage::empty_memory_usage_files ()

void	oomph::MemoryUsage::doc_memory_usage (const std::string &prefix_string)

void	oomph::MemoryUsage::empty_top_file ()

void	oomph::MemoryUsage::run_continous_top (const std::string &comment)

void	oomph::MemoryUsage::stop_continous_top (const std::string &comment)

void	oomph::MemoryUsage::insert_comment_to_continous_top (const std::string &comment)
	Insert comment into running continuous top output. More...

Variables
std::string	oomph::ANSIEscapeCode::Text_effect = "1"
	Variable to decide on effects. More...

std::string	oomph::ANSIEscapeCode::Black = "\033[" + Text_effect + ";30m"
	The code for each type of colour. More...

std::string	oomph::ANSIEscapeCode::Red = "\033[" + Text_effect + ";31m"

std::string	oomph::ANSIEscapeCode::Green = "\033[" + Text_effect + ";32m"

std::string	oomph::ANSIEscapeCode::Yellow = "\033[" + Text_effect + ";33m"

std::string	oomph::ANSIEscapeCode::Blue = "\033[" + Text_effect + ";34m"

std::string	oomph::ANSIEscapeCode::Magenta = "\033[" + Text_effect + ";35m"

std::string	oomph::ANSIEscapeCode::Cyan = "\033[" + Text_effect + ";36m"

std::string	oomph::ANSIEscapeCode::Reset = "\033[0m"

Vector< clock_t >	oomph::CumulativeTimings::Timing
	Cumulative timings. More...

Vector< clock_t >	oomph::CumulativeTimings::Start_time
	Start times of active timers. More...

int	oomph::CommandLineArgs::Argc
	Number of arguments + 1. More...

char **	oomph::CommandLineArgs::Argv
	Arguments themselves. More...

std::map< std::string, ArgInfo< bool > >	oomph::CommandLineArgs::Specified_command_line_flag
	Map to indicate an input flag as having been set. More...

std::map< std::string, ArgInfo< double > >	oomph::CommandLineArgs::Specified_command_line_double_pt
	Map to associate an input flag with a double – specified via pointer. More...

std::map< std::string, ArgInfo< int > >	oomph::CommandLineArgs::Specified_command_line_int_pt
	Map to associate an input flag with an int – specified via pointer. More...

std::map< std::string, ArgInfo< unsigned > >	oomph::CommandLineArgs::Specified_command_line_unsigned_pt
	Map to associate an input flag with an unsigned – specified via pointer. More...

std::map< std::string, ArgInfo< std::string > >	oomph::CommandLineArgs::Specified_command_line_string_pt
	Map to associate an input flag with a string – specified via pointer. More...

bool	oomph::ObsoleteCode::FlagObsoleteCode = true
	Flag up obsolete parts of the code. More...

Vector< std::string >	oomph::TecplotNames::colour
	Tecplot colours. More...

bool	oomph::PauseFlags::PauseFlag = true
	Flag to enable pausing code – pause the code by default. More...

bool	oomph::MemoryUsage::Suppress_mpi_synchronisation = true

std::string	oomph::MemoryUsage::My_memory_usage_system_string = "ps aux"

bool	oomph::MemoryUsage::Bypass_all_memory_usage_monitoring = false

std::string	oomph::MemoryUsage::My_memory_usage_filename = "my_memory_usage.dat"

std::string	oomph::MemoryUsage::Total_memory_usage_system_string

std::string	oomph::MemoryUsage::Total_memory_usage_filename = "memory_usage.dat"

std::string	oomph::MemoryUsage::Top_system_string = "while true; do top -b -n 2 ; done "

std::string	oomph::MemoryUsage::Top_output_filename = "top_output.dat"

Namespaces

Functions

Variables