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#include <pseudo_elastic_preconditioner.h>
Public Types | |
typedef Preconditioner *(* | SubsidiaryPreconditionerFctPt) () |
Public Member Functions | |
PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld () | |
Constructor. (By default this preconditioner is upper triangular). More... | |
~PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld () | |
Destructor. More... | |
PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld (const PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld &)=delete | |
Broken copy constructor. More... | |
void | clean_up_memory () |
Broken assignment operator. More... | |
void | setup () |
Setup the preconditioner. More... | |
void | preconditioner_solve (const DoubleVector &res, DoubleVector &z) |
Apply preconditioner to r. More... | |
void | set_subsidiary_preconditioner_function (SubsidiaryPreconditionerFctPt sub_prec_fn) |
access function to set the subsidiary preconditioner function. More... | |
void | use_block_diagonal_approximation () |
use as a block diagonal preconditioner More... | |
void | use_upper_triangular_approximation () |
Use as an upper triangular preconditioner. More... | |
void | use_lower_triangular_approximation () |
Use as a lower triangular preconditioner. More... | |
double & | scaling () |
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BlockPreconditioner () | |
Constructor. More... | |
BlockPreconditioner (const BlockPreconditioner &)=delete | |
Broken copy constructor. More... | |
virtual | ~BlockPreconditioner () |
Destructor. More... | |
void | operator= (const BlockPreconditioner &)=delete |
Broken assignment operator. More... | |
CRDoubleMatrix * | matrix_pt () const |
void | turn_on_recursive_debug_flag () |
void | turn_off_recursive_debug_flag () |
void | turn_on_debug_flag () |
Toggles on the debug flag. More... | |
void | turn_off_debug_flag () |
Toggles off the debug flag. More... | |
void | turn_into_subsidiary_block_preconditioner (BlockPreconditioner< CRDoubleMatrix > *master_block_prec_pt, const Vector< unsigned > &doftype_in_master_preconditioner_coarse) |
void | turn_into_subsidiary_block_preconditioner (BlockPreconditioner< CRDoubleMatrix > *master_block_prec_pt, const Vector< unsigned > &doftype_in_master_preconditioner_coarse, const Vector< Vector< unsigned >> &doftype_coarsen_map_coarse) |
virtual void | block_setup () |
void | block_setup (const Vector< unsigned > &dof_to_block_map) |
void | get_block (const unsigned &i, const unsigned &j, CRDoubleMatrix &output_matrix, const bool &ignore_replacement_block=false) const |
CRDoubleMatrix | get_block (const unsigned &i, const unsigned &j, const bool &ignore_replacement_block=false) const |
void | set_master_matrix_pt (CRDoubleMatrix *in_matrix_pt) |
Set the matrix_pt in the upper-most master preconditioner. More... | |
void | get_block_other_matrix (const unsigned &i, const unsigned &j, CRDoubleMatrix *in_matrix_pt, CRDoubleMatrix &output_matrix) |
void | get_blocks (DenseMatrix< bool > &required_blocks, DenseMatrix< CRDoubleMatrix * > &block_matrix_pt) const |
void | get_dof_level_block (const unsigned &i, const unsigned &j, CRDoubleMatrix &output_block, const bool &ignore_replacement_block=false) const |
void | get_dof_level_block (const unsigned &block_i, const unsigned &block_j, CRDoubleMatrix &output_block, const bool &ignore_replacement_block) const |
CRDoubleMatrix | get_concatenated_block (const VectorMatrix< BlockSelector > &selected_block) |
void | get_concatenated_block_vector (const Vector< unsigned > &block_vec_number, const DoubleVector &v, DoubleVector &b) |
void | return_concatenated_block_vector (const Vector< unsigned > &block_vec_number, const DoubleVector &b, DoubleVector &v) const |
Takes concatenated block ordered vector, b, and copies its. More... | |
void | get_block_vectors (const Vector< unsigned > &block_vec_number, const DoubleVector &v, Vector< DoubleVector > &s) const |
void | get_block_vectors (const DoubleVector &v, Vector< DoubleVector > &s) const |
void | return_block_vectors (const Vector< unsigned > &block_vec_number, const Vector< DoubleVector > &s, DoubleVector &v) const |
void | return_block_vectors (const Vector< DoubleVector > &s, DoubleVector &v) const |
void | get_block_vector (const unsigned &n, const DoubleVector &v, DoubleVector &b) const |
void | return_block_vector (const unsigned &n, const DoubleVector &b, DoubleVector &v) const |
void | get_block_ordered_preconditioner_vector (const DoubleVector &v, DoubleVector &w) |
void | return_block_ordered_preconditioner_vector (const DoubleVector &w, DoubleVector &v) const |
unsigned | nblock_types () const |
Return the number of block types. More... | |
unsigned | ndof_types () const |
Return the total number of DOF types. More... | |
const Mesh * | mesh_pt (const unsigned &i) const |
unsigned | nmesh () const |
int | block_number (const unsigned &i_dof) const |
Return the block number corresponding to a global index i_dof. More... | |
int | index_in_block (const unsigned &i_dof) const |
const LinearAlgebraDistribution * | block_distribution_pt (const unsigned &b) const |
Access function to the block distributions (const version). More... | |
LinearAlgebraDistribution * | block_distribution_pt (const unsigned b) |
Access function to the block distributions (non-const version). More... | |
LinearAlgebraDistribution * | dof_block_distribution_pt (const unsigned &b) |
Access function to the dof-level block distributions. More... | |
const LinearAlgebraDistribution * | master_distribution_pt () const |
unsigned | ndof_types_in_mesh (const unsigned &i) const |
bool | is_subsidiary_block_preconditioner () const |
bool | is_master_block_preconditioner () const |
void | set_block_output_to_files (const std::string &basefilename) |
void | disable_block_output_to_files () |
Turn off output of blocks (by clearing the basefilename string). More... | |
bool | block_output_on () const |
Test if output of blocks is on or not. More... | |
void | output_blocks_to_files (const std::string &basefilename, const unsigned &precision=8) const |
void | post_block_matrix_assembly_partial_clear () |
BlockPreconditioner< CRDoubleMatrix > * | master_block_preconditioner_pt () const |
Access function to the master block preconditioner pt. More... | |
void | clear_block_preconditioner_base () |
void | document () |
Vector< Vector< unsigned > > | doftype_coarsen_map_fine () const |
Vector< unsigned > | get_fine_grain_dof_types_in (const unsigned &i) const |
unsigned | nfine_grain_dof_types_in (const unsigned &i) const |
MapMatrix< unsigned, CRDoubleMatrix * > | replacement_dof_block_pt () const |
Access function to the replaced dof-level blocks. More... | |
void | setup_matrix_vector_product (MatrixVectorProduct *matvec_prod_pt, CRDoubleMatrix *block_pt, const Vector< unsigned > &block_col_indices) |
void | setup_matrix_vector_product (MatrixVectorProduct *matvec_prod_pt, CRDoubleMatrix *block_pt, const unsigned &block_col_index) |
void | internal_get_block_ordered_preconditioner_vector (const DoubleVector &v, DoubleVector &w) const |
void | internal_return_block_ordered_preconditioner_vector (const DoubleVector &w, DoubleVector &v) const |
unsigned | internal_nblock_types () const |
unsigned | internal_ndof_types () const |
void | internal_return_block_vector (const unsigned &n, const DoubleVector &b, DoubleVector &v) const |
void | internal_get_block_vector (const unsigned &n, const DoubleVector &v, DoubleVector &b) const |
void | internal_get_block_vectors (const Vector< unsigned > &block_vec_number, const DoubleVector &v, Vector< DoubleVector > &s) const |
void | internal_get_block_vectors (const DoubleVector &v, Vector< DoubleVector > &s) const |
void | internal_return_block_vectors (const Vector< unsigned > &block_vec_number, const Vector< DoubleVector > &s, DoubleVector &v) const |
void | internal_return_block_vectors (const Vector< DoubleVector > &s, DoubleVector &v) const |
void | internal_get_block (const unsigned &i, const unsigned &j, CRDoubleMatrix &output_block) const |
void | internal_get_block (const unsigned &block_i, const unsigned &block_j, CRDoubleMatrix &output_block) const |
int | internal_block_number (const unsigned &i_dof) const |
int | internal_index_in_block (const unsigned &i_dof) const |
const LinearAlgebraDistribution * | internal_block_distribution_pt (const unsigned &b) const |
Access function to the internal block distributions. More... | |
void | insert_auxiliary_block_distribution (const Vector< unsigned > &block_vec_number, LinearAlgebraDistribution *dist_pt) |
void | block_matrix_test (const unsigned &i, const unsigned &j, const CRDoubleMatrix *block_matrix_pt) const |
int | get_index_of_value (const Vector< myType > &vec, const myType val, const bool sorted=false) const |
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Preconditioner () | |
Constructor. More... | |
Preconditioner (const Preconditioner &)=delete | |
Broken copy constructor. More... | |
void | operator= (const Preconditioner &)=delete |
Broken assignment operator. More... | |
virtual | ~Preconditioner () |
Destructor (empty) More... | |
virtual void | preconditioner_solve_transpose (const DoubleVector &r, DoubleVector &z) |
void | setup (DoubleMatrixBase *matrix_pt) |
void | setup (const Problem *problem_pt, DoubleMatrixBase *matrix_pt) |
void | enable_silent_preconditioner_setup () |
Set up the block preconditioner quietly! More... | |
void | disable_silent_preconditioner_setup () |
Be verbose in the block preconditioner setup. More... | |
virtual void | set_matrix_pt (DoubleMatrixBase *matrix_pt) |
Set the matrix pointer. More... | |
virtual const OomphCommunicator * | comm_pt () const |
Get function for comm pointer. More... | |
virtual void | set_comm_pt (const OomphCommunicator *const comm_pt) |
Set the communicator pointer. More... | |
double | setup_time () const |
Returns the time to setup the preconditioner. More... | |
virtual void | turn_into_subsidiary_block_preconditioner (BlockPreconditioner< CRDoubleMatrix > *master_block_prec_pt, const Vector< unsigned > &doftype_in_master_preconditioner_coarse) |
virtual void | turn_into_subsidiary_block_preconditioner (BlockPreconditioner< CRDoubleMatrix > *master_block_prec_pt, const Vector< unsigned > &doftype_in_master_preconditioner_coarse, const Vector< Vector< unsigned >> &doftype_coarsen_map_coarse) |
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DistributableLinearAlgebraObject () | |
Default constructor - create a distribution. More... | |
DistributableLinearAlgebraObject (const DistributableLinearAlgebraObject &matrix)=delete | |
Broken copy constructor. More... | |
void | operator= (const DistributableLinearAlgebraObject &)=delete |
Broken assignment operator. More... | |
virtual | ~DistributableLinearAlgebraObject () |
Destructor. More... | |
LinearAlgebraDistribution * | distribution_pt () const |
access to the LinearAlgebraDistribution More... | |
unsigned | nrow () const |
access function to the number of global rows. More... | |
unsigned | nrow_local () const |
access function for the num of local rows on this processor. More... | |
unsigned | nrow_local (const unsigned &p) const |
access function for the num of local rows on this processor. More... | |
unsigned | first_row () const |
access function for the first row on this processor More... | |
unsigned | first_row (const unsigned &p) const |
access function for the first row on this processor More... | |
bool | distributed () const |
distribution is serial or distributed More... | |
bool | distribution_built () const |
void | build_distribution (const LinearAlgebraDistribution *const dist_pt) |
void | build_distribution (const LinearAlgebraDistribution &dist) |
Private Attributes | |
Vector< PseudoElasticPreconditionerSubsidiaryPreconditionerOld * > | Diagonal_block_preconditioner_pt |
DenseMatrix< MatrixVectorProduct * > | Off_diagonal_matrix_vector_products |
Matrix of matrix vector product operators for the off diagonals. More... | |
unsigned | Method |
SubsidiaryPreconditionerFctPt | Subsidiary_preconditioner_function_pt |
The SubisidaryPreconditionerFctPt. More... | |
double | Scaling |
The scaling. default 1.0. More... | |
///////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////// Subsidiary helper preconditioner for the PseudoElasticPreconditioner. Required for block preconditioner of the augmented elastic subsidiary problem. NOTE:
typedef Preconditioner*(* oomph::PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld::SubsidiaryPreconditionerFctPt) () |
This preconditioner includes the option to use subsidiary operators other than SuperLUPreconditioner for this problem. This is the typedef of a function that should return an instance of a subsidiary preconditioning operator. This preconditioner is responsible for the destruction of the subsidiary preconditioners.
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Constructor. (By default this preconditioner is upper triangular).
References Method, Scaling, and Subsidiary_preconditioner_function_pt.
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inline |
Destructor.
References clean_up_memory().
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delete |
Broken copy constructor.
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virtual |
Broken assignment operator.
clean up the memory
//////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////
Reimplemented from oomph::Preconditioner.
References oomph::BlockPreconditioner< CRDoubleMatrix >::clear_block_preconditioner_base(), Diagonal_block_preconditioner_pt, i, j, Method, and Off_diagonal_matrix_vector_products.
Referenced by setup(), and ~PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld().
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virtual |
Apply preconditioner to r.
Implements oomph::Preconditioner.
References Diagonal_block_preconditioner_pt, Eigen::placeholders::end, oomph::BlockPreconditioner< CRDoubleMatrix >::get_block_vector(), i, j, Method, oomph::BlockPreconditioner< CRDoubleMatrix >::nblock_types(), Off_diagonal_matrix_vector_products, UniformPSDSelfTest::r, res, oomph::BlockPreconditioner< CRDoubleMatrix >::return_block_vector(), oomph::CumulativeTimings::start(), plotDoE::x, and y.
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Specify the scaling. Default is 1.0 Must be set before setup(...).
References Scaling.
Referenced by oomph::PseudoElasticPreconditionerOld::setup().
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inline |
access function to set the subsidiary preconditioner function.
References Subsidiary_preconditioner_function_pt.
Referenced by oomph::PseudoElasticPreconditionerOld::setup().
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Setup the preconditioner.
Implements oomph::Preconditioner.
References oomph::BlockPreconditioner< CRDoubleMatrix >::block_setup(), clean_up_memory(), Diagonal_block_preconditioner_pt, oomph::BlockPreconditioner< CRDoubleMatrix >::get_block(), j, oomph::BlockPreconditioner< CRDoubleMatrix >::matrix_pt(), Method, oomph::BlockPreconditioner< CRDoubleMatrix >::ndof_types(), Off_diagonal_matrix_vector_products, OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, Scaling, oomph::BlockPreconditioner< CRDoubleMatrix >::setup_matrix_vector_product(), and Subsidiary_preconditioner_function_pt.
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use as a block diagonal preconditioner
References Method.
Referenced by oomph::PseudoElasticPreconditionerOld::setup().
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Use as a lower triangular preconditioner.
References Method.
Referenced by oomph::PseudoElasticPreconditionerOld::setup().
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Use as an upper triangular preconditioner.
References Method.
Referenced by oomph::PseudoElasticPreconditionerOld::setup().
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private |
Vector of SuperLU preconditioner pointers for storing the preconditioners for each diagonal block
Referenced by clean_up_memory(), preconditioner_solve(), and setup().
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the preconditioning method. 0 - block diagonal 1 - upper triangular 2 - lower triangular
Referenced by clean_up_memory(), preconditioner_solve(), PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld(), setup(), use_block_diagonal_approximation(), use_lower_triangular_approximation(), and use_upper_triangular_approximation().
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Matrix of matrix vector product operators for the off diagonals.
Referenced by clean_up_memory(), preconditioner_solve(), and setup().
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The scaling. default 1.0.
Referenced by PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld(), scaling(), and setup().
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The SubisidaryPreconditionerFctPt.
Referenced by PseudoElasticPreconditionerSubsidiaryBlockPreconditionerOld(), set_subsidiary_preconditioner_function(), and setup().