Inheritance diagram for SSPorousChannelElement:

Public Member Functions
	SSPorousChannelElement ()
	Constructor, there are no internal values. More...

unsigned	required_nvalue (const unsigned &n) const
	Required number of values at node n. More...

double	f (const unsigned &l, const unsigned &i) const
	Return the i-th ODE variable stored at the n-th local node. More...

double	f (const unsigned &t, const unsigned &l, const unsigned &i) const
	Return the i-th ODE variable stored at the n-th local node at time t. More...

double	df0dx (const unsigned &l) const

void	output (ostream &outfile)
	Overload the output function. More...

void	output (ostream &outfile, const unsigned &Nplot)
	Output function: x,y[,z],u,v[,w],p at Nplot^DIM points. More...

	SSPorousChannelElement ()
	Constructor, there are no internal values. More...

unsigned	required_nvalue (const unsigned &n) const
	Required number of values at node n. More...

double	f (const unsigned &l, const unsigned &i) const
	Return the i-th ODE variable stored at the n-th local node. More...

double	f (const unsigned &t, const unsigned &l, const unsigned &i) const
	Return the i-th ODE variable stored at the n-th local node at time t. More...

double	df0dx (const unsigned &l) const

void	output (ostream &outfile)
	Overload the output function. More...

void	output (ostream &outfile, const unsigned &Nplot)
	Output function: x,y[,z],u,v[,w],p at Nplot^DIM points. More...

Public Member Functions inherited from SSPorousChannelEquations
	SSPorousChannelEquations ()
	Empty Constructor, set boolean flags to be false. More...

const double &	re () const
	Access functions for the Reynolds number. More...

double *&	re_pt ()
	Access function for a pointer to the Reynolds number. More...

double	df_dt (const unsigned &n, const unsigned &i) const

void	fill_in_contribution_to_residuals (Vector< double > &residuals)
	This function returns just the residuals. More...

void	fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)
	This function returns the residuals and the jacobian. More...

void	add_generic_residual_contribution (Vector< double > &residuals, DenseMatrix< double > &jacobian, unsigned flag)

double	interpolated_f (const Vector< double > &s, const unsigned &i)
	FE interpolated values of the arguments. More...

	SSPorousChannelEquations ()
	Empty Constructor, set boolean flags to be false. More...

const double &	re () const
	Access functions for the Reynolds number. More...

double *&	re_pt ()
	Access function for a pointer to the Reynolds number. More...

double	df_dt (const unsigned &n, const unsigned &i) const

void	fill_in_contribution_to_residuals (Vector< double > &residuals)
	This function returns just the residuals. More...

void	fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)
	This function returns the residuals and the jacobian. More...

void	add_generic_residual_contribution (Vector< double > &residuals, DenseMatrix< double > &jacobian, unsigned flag)

double	interpolated_f (const Vector< double > &s, const unsigned &i)
	FE interpolated values of the arguments. More...

Public Member Functions inherited from oomph::FiniteElement
void	set_dimension (const unsigned &dim)

void	set_nodal_dimension (const unsigned &nodal_dim)

void	set_nnodal_position_type (const unsigned &nposition_type)
	Set the number of types required to interpolate the coordinate. More...

void	set_n_node (const unsigned &n)

int	nodal_local_eqn (const unsigned &n, const unsigned &i) const

double	dJ_eulerian_at_knot (const unsigned &ipt, Shape &psi, DenseMatrix< double > &djacobian_dX) const

	FiniteElement ()
	Constructor. More...

virtual	~FiniteElement ()

	FiniteElement (const FiniteElement &)=delete
	Broken copy constructor. More...

virtual bool	local_coord_is_valid (const Vector< double > &s)
	Broken assignment operator. More...

virtual void	move_local_coord_back_into_element (Vector< double > &s) const

void	get_centre_of_gravity_and_max_radius_in_terms_of_zeta (Vector< double > &cog, double &max_radius) const

virtual void	local_coordinate_of_node (const unsigned &j, Vector< double > &s) const

virtual void	local_fraction_of_node (const unsigned &j, Vector< double > &s_fraction)

virtual double	local_one_d_fraction_of_node (const unsigned &n1d, const unsigned &i)

virtual void	set_macro_elem_pt (MacroElement *macro_elem_pt)

MacroElement *	macro_elem_pt ()
	Access function to pointer to macro element. More...

void	get_x (const Vector< double > &s, Vector< double > &x) const

void	get_x (const unsigned &t, const Vector< double > &s, Vector< double > &x)

virtual void	get_x_from_macro_element (const Vector< double > &s, Vector< double > &x) const

virtual void	get_x_from_macro_element (const unsigned &t, const Vector< double > &s, Vector< double > &x)

virtual void	set_integration_scheme (Integral *const &integral_pt)
	Set the spatial integration scheme. More...

Integral *const &	integral_pt () const
	Return the pointer to the integration scheme (const version) More...

virtual void	shape (const Vector< double > &s, Shape &psi) const =0

virtual void	shape_at_knot (const unsigned &ipt, Shape &psi) const

virtual void	dshape_local (const Vector< double > &s, Shape &psi, DShape &dpsids) const

virtual void	dshape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids) const

virtual void	d2shape_local (const Vector< double > &s, Shape &psi, DShape &dpsids, DShape &d2psids) const

virtual void	d2shape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids, DShape &d2psids) const

virtual double	J_eulerian (const Vector< double > &s) const

virtual double	J_eulerian_at_knot (const unsigned &ipt) const

void	check_J_eulerian_at_knots (bool &passed) const

void	check_jacobian (const double &jacobian) const

double	dshape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx) const

virtual double	dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx) const

virtual double	dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsi, DenseMatrix< double > &djacobian_dX, RankFourTensor< double > &d_dpsidx_dX) const

double	d2shape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx, DShape &d2psidx) const

virtual double	d2shape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, DShape &d2psidx) const

virtual void	assign_nodal_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	describe_local_dofs (std::ostream &out, const std::string &current_string) const

virtual void	describe_nodal_local_dofs (std::ostream &out, const std::string &current_string) const

virtual void	assign_all_generic_local_eqn_numbers (const bool &store_local_dof_pt)

Node *&	node_pt (const unsigned &n)
	Return a pointer to the local node n. More...

Node *const &	node_pt (const unsigned &n) const
	Return a pointer to the local node n (const version) More...

unsigned	nnode () const
	Return the number of nodes. More...

virtual unsigned	nnode_1d () const

double	raw_nodal_position (const unsigned &n, const unsigned &i) const

double	raw_nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const

double	raw_dnodal_position_dt (const unsigned &n, const unsigned &i) const

double	raw_dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const

double	raw_nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const

double	nodal_position (const unsigned &n, const unsigned &i) const

double	nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const

double	dnodal_position_dt (const unsigned &n, const unsigned &i) const
	Return the i-th component of nodal velocity: dx/dt at local node n. More...

double	dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const

double	nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const

double	dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const

double	dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const

virtual void	get_dresidual_dnodal_coordinates (RankThreeTensor< double > &dresidual_dnodal_coordinates)

virtual void	disable_ALE ()

virtual void	enable_ALE ()

unsigned	nnodal_position_type () const

bool	has_hanging_nodes () const

unsigned	nodal_dimension () const
	Return the required Eulerian dimension of the nodes in this element. More...

virtual unsigned	nvertex_node () const

virtual Node *	vertex_node_pt (const unsigned &j) const

virtual Node *	construct_node (const unsigned &n)

virtual Node *	construct_node (const unsigned &n, TimeStepper *const &time_stepper_pt)

virtual Node *	construct_boundary_node (const unsigned &n)

virtual Node *	construct_boundary_node (const unsigned &n, TimeStepper *const &time_stepper_pt)

int	get_node_number (Node *const &node_pt) const

virtual Node *	get_node_at_local_coordinate (const Vector< double > &s) const

double	raw_nodal_value (const unsigned &n, const unsigned &i) const

double	raw_nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const

double	nodal_value (const unsigned &n, const unsigned &i) const

double	nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const

unsigned	dim () const

virtual ElementGeometry::ElementGeometry	element_geometry () const
	Return the geometry type of the element (either Q or T usually). More...

virtual double	interpolated_x (const Vector< double > &s, const unsigned &i) const
	Return FE interpolated coordinate x[i] at local coordinate s. More...

virtual double	interpolated_x (const unsigned &t, const Vector< double > &s, const unsigned &i) const

virtual void	interpolated_x (const Vector< double > &s, Vector< double > &x) const
	Return FE interpolated position x[] at local coordinate s as Vector. More...

virtual void	interpolated_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) const

virtual double	interpolated_dxdt (const Vector< double > &s, const unsigned &i, const unsigned &t)

virtual void	interpolated_dxdt (const Vector< double > &s, const unsigned &t, Vector< double > &dxdt)

unsigned	ngeom_data () const

Data *	geom_data_pt (const unsigned &j)

void	position (const Vector< double > &zeta, Vector< double > &r) const

void	position (const unsigned &t, const Vector< double > &zeta, Vector< double > &r) const

void	dposition_dt (const Vector< double > &zeta, const unsigned &t, Vector< double > &drdt)

virtual double	zeta_nodal (const unsigned &n, const unsigned &k, const unsigned &i) const

void	interpolated_zeta (const Vector< double > &s, Vector< double > &zeta) const

void	locate_zeta (const Vector< double > &zeta, GeomObject *&geom_object_pt, Vector< double > &s, const bool &use_coordinate_as_initial_guess=false)

virtual void	node_update ()

virtual void	identify_field_data_for_interactions (std::set< std::pair< Data *, unsigned >> &paired_field_data)

virtual void	identify_geometric_data (std::set< Data * > &geometric_data_pt)

virtual double	s_min () const
	Min value of local coordinate. More...

virtual double	s_max () const
	Max. value of local coordinate. More...

double	size () const

virtual double	compute_physical_size () const

virtual void	point_output_data (const Vector< double > &s, Vector< double > &data)

void	point_output (std::ostream &outfile, const Vector< double > &s)

virtual unsigned	nplot_points_paraview (const unsigned &nplot) const

virtual unsigned	nsub_elements_paraview (const unsigned &nplot) const

void	output_paraview (std::ofstream &file_out, const unsigned &nplot) const

virtual void	write_paraview_output_offset_information (std::ofstream &file_out, const unsigned &nplot, unsigned &counter) const

virtual void	write_paraview_type (std::ofstream &file_out, const unsigned &nplot) const

virtual void	write_paraview_offsets (std::ofstream &file_out, const unsigned &nplot, unsigned &offset_sum) const

virtual unsigned	nscalar_paraview () const

virtual void	scalar_value_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot) const

virtual void	scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const

virtual void	scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const

virtual std::string	scalar_name_paraview (const unsigned &i) const

virtual void	output (const unsigned &t, std::ostream &outfile, const unsigned &n_plot) const

virtual void	output (FILE *file_pt)

virtual void	output (FILE *file_pt, const unsigned &n_plot)

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt)
	Output an exact solution over the element. More...

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt)
	Output a time-dependent exact solution over the element. More...

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, const SolutionFunctorBase &exact_soln) const
	Output a time-dependent exact solution over the element. More...

virtual void	get_s_plot (const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const

virtual std::string	tecplot_zone_string (const unsigned &nplot) const

virtual void	write_tecplot_zone_footer (std::ostream &outfile, const unsigned &nplot) const

virtual void	write_tecplot_zone_footer (FILE *file_pt, const unsigned &nplot) const

virtual unsigned	nplot_points (const unsigned &nplot) const

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)
	Calculate the norm of the error and that of the exact solution. More...

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
	Calculate the norm of the error and that of the exact solution. More...

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_abs_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error)

void	integrate_fct (FiniteElement::SteadyExactSolutionFctPt integrand_fct_pt, Vector< double > &integral)
	Integrate Vector-valued function over element. More...

void	integrate_fct (FiniteElement::UnsteadyExactSolutionFctPt integrand_fct_pt, const double &time, Vector< double > &integral)
	Integrate Vector-valued time-dep function over element. More...

virtual void	build_face_element (const int &face_index, FaceElement *face_element_pt)

virtual unsigned	self_test ()

virtual unsigned	get_bulk_node_number (const int &face_index, const unsigned &i) const

virtual int	face_outer_unit_normal_sign (const int &face_index) const
	Get the sign of the outer unit normal on the face given by face_index. More...

virtual unsigned	nnode_on_face () const

void	face_node_number_error_check (const unsigned &i) const
	Range check for face node numbers. More...

virtual CoordinateMappingFctPt	face_to_bulk_coordinate_fct_pt (const int &face_index) const

virtual BulkCoordinateDerivativesFctPt	bulk_coordinate_derivatives_fct_pt (const int &face_index) const

Public Member Functions inherited from oomph::GeneralisedElement
	GeneralisedElement ()
	Constructor: Initialise all pointers and all values to zero. More...

virtual	~GeneralisedElement ()
	Virtual destructor to clean up any memory allocated by the object. More...

	GeneralisedElement (const GeneralisedElement &)=delete
	Broken copy constructor. More...

void	operator= (const GeneralisedElement &)=delete
	Broken assignment operator. More...

Data *&	internal_data_pt (const unsigned &i)
	Return a pointer to i-th internal data object. More...

Data *const &	internal_data_pt (const unsigned &i) const
	Return a pointer to i-th internal data object (const version) More...

Data *&	external_data_pt (const unsigned &i)
	Return a pointer to i-th external data object. More...

Data *const &	external_data_pt (const unsigned &i) const
	Return a pointer to i-th external data object (const version) More...

unsigned long	eqn_number (const unsigned &ieqn_local) const

int	local_eqn_number (const unsigned long &ieqn_global) const

unsigned	add_external_data (Data *const &data_pt, const bool &fd=true)

bool	external_data_fd (const unsigned &i) const

void	exclude_external_data_fd (const unsigned &i)

void	include_external_data_fd (const unsigned &i)

void	flush_external_data ()
	Flush all external data. More...

void	flush_external_data (Data *const &data_pt)
	Flush the object addressed by data_pt from the external data array. More...

unsigned	ninternal_data () const
	Return the number of internal data objects. More...

unsigned	nexternal_data () const
	Return the number of external data objects. More...

unsigned	ndof () const
	Return the number of equations/dofs in the element. More...

void	dof_vector (const unsigned &t, Vector< double > &dof)
	Return the vector of dof values at time level t. More...

void	dof_pt_vector (Vector< double * > &dof_pt)
	Return the vector of pointers to dof values. More...

void	set_internal_data_time_stepper (const unsigned &i, TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

void	assign_internal_eqn_numbers (unsigned long &global_number, Vector< double * > &Dof_pt)

void	describe_dofs (std::ostream &out, const std::string &current_string) const

void	add_internal_value_pt_to_map (std::map< unsigned, double * > &map_of_value_pt)

virtual void	assign_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	complete_setup_of_dependencies ()

virtual void	get_residuals (Vector< double > &residuals)

virtual void	get_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)

virtual void	get_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)

virtual void	get_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)

virtual void	get_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)

virtual void	get_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)

virtual void	get_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)

virtual void	get_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)

virtual void	get_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)

virtual void	get_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)

virtual void	compute_norm (Vector< double > &norm)

virtual void	compute_norm (double &norm)

virtual unsigned	ndof_types () const

virtual void	get_dof_numbers_for_unknowns (std::list< std::pair< unsigned long, unsigned >> &dof_lookup_list) const

Public Member Functions inherited from oomph::GeomObject
	GeomObject ()
	Default constructor. More...

	GeomObject (const unsigned &ndim)

	GeomObject (const unsigned &nlagrangian, const unsigned &ndim)

	GeomObject (const unsigned &nlagrangian, const unsigned &ndim, TimeStepper *time_stepper_pt)

	GeomObject (const GeomObject &dummy)=delete
	Broken copy constructor. More...

void	operator= (const GeomObject &)=delete
	Broken assignment operator. More...

virtual	~GeomObject ()
	(Empty) destructor More...

unsigned	nlagrangian () const
	Access function to # of Lagrangian coordinates. More...

unsigned	ndim () const
	Access function to # of Eulerian coordinates. More...

void	set_nlagrangian_and_ndim (const unsigned &n_lagrangian, const unsigned &n_dim)
	Set # of Lagrangian and Eulerian coordinates. More...

TimeStepper *&	time_stepper_pt ()

TimeStepper *	time_stepper_pt () const

virtual void	position (const double &t, const Vector< double > &zeta, Vector< double > &r) const

virtual void	dposition (const Vector< double > &zeta, DenseMatrix< double > &drdzeta) const

virtual void	d2position (const Vector< double > &zeta, RankThreeTensor< double > &ddrdzeta) const

virtual void	d2position (const Vector< double > &zeta, Vector< double > &r, DenseMatrix< double > &drdzeta, RankThreeTensor< double > &ddrdzeta) const

Protected Member Functions
double	dshape_and_dtest_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, Shape &test, DShape &dtestdx)

double	dshape_and_dtest_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, Shape &test, DShape &dtestdx)

Protected Member Functions inherited from oomph::FiniteElement
virtual void	assemble_local_to_eulerian_jacobian (const DShape &dpsids, DenseMatrix< double > &jacobian) const

virtual void	assemble_local_to_eulerian_jacobian2 (const DShape &d2psids, DenseMatrix< double > &jacobian2) const

virtual void	assemble_eulerian_base_vectors (const DShape &dpsids, DenseMatrix< double > &interpolated_G) const

template<unsigned DIM>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual double	invert_jacobian_mapping (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual double	local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

double	local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const

virtual double	local_to_eulerian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual void	dJ_eulerian_dnodal_coordinates (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<unsigned DIM>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

virtual void	d_dshape_eulerian_dnodal_coordinates (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<unsigned DIM>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

virtual void	transform_derivatives (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const

void	transform_derivatives_diagonal (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const

virtual void	transform_second_derivatives (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<unsigned DIM>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<unsigned DIM>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

virtual void	fill_in_jacobian_from_nodal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_jacobian_from_nodal_by_fd (DenseMatrix< double > &jacobian)

virtual void	update_before_nodal_fd ()

virtual void	reset_after_nodal_fd ()

virtual void	update_in_nodal_fd (const unsigned &i)

virtual void	reset_in_nodal_fd (const unsigned &i)

void	fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	Zero-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	One-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	Two-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

Protected Member Functions inherited from oomph::GeneralisedElement
unsigned	add_internal_data (Data *const &data_pt, const bool &fd=true)

bool	internal_data_fd (const unsigned &i) const

void	exclude_internal_data_fd (const unsigned &i)

void	include_internal_data_fd (const unsigned &i)

void	clear_global_eqn_numbers ()

void	add_global_eqn_numbers (std::deque< unsigned long > const &global_eqn_numbers, std::deque< double * > const &global_dof_pt)

virtual void	assign_internal_and_external_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	assign_additional_local_eqn_numbers ()

int	internal_local_eqn (const unsigned &i, const unsigned &j) const

int	external_local_eqn (const unsigned &i, const unsigned &j)

void	fill_in_jacobian_from_internal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_internal_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_external_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_external_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

virtual void	update_before_internal_fd ()

virtual void	reset_after_internal_fd ()

virtual void	update_in_internal_fd (const unsigned &i)

virtual void	reset_in_internal_fd (const unsigned &i)

virtual void	update_before_external_fd ()

virtual void	reset_after_external_fd ()

virtual void	update_in_external_fd (const unsigned &i)

virtual void	reset_in_external_fd (const unsigned &i)

virtual void	fill_in_contribution_to_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)

virtual void	fill_in_contribution_to_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)

virtual void	fill_in_contribution_to_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)

virtual void	fill_in_contribution_to_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)

virtual void	fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)

virtual void	fill_in_contribution_to_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)

virtual void	fill_in_contribution_to_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)

virtual void	fill_in_contribution_to_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)

Static Private Attributes
static const unsigned	Initial_Nvalue [] ={2,2,2}

Additional Inherited Members
Public Types inherited from oomph::FiniteElement
typedef void(*	SteadyExactSolutionFctPt) (const Vector< double > &, Vector< double > &)

typedef void(*	UnsteadyExactSolutionFctPt) (const double &, const Vector< double > &, Vector< double > &)

Static Public Attributes inherited from oomph::FiniteElement
static double	Tolerance_for_singular_jacobian = 1.0e-16
	Tolerance below which the jacobian is considered singular. More...

static bool	Accept_negative_jacobian = false

static bool	Suppress_output_while_checking_for_inverted_elements

Static Public Attributes inherited from oomph::GeneralisedElement
static bool	Suppress_warning_about_repeated_internal_data

static bool	Suppress_warning_about_repeated_external_data = true

static double	Default_fd_jacobian_step = 1.0e-8

Protected Attributes inherited from oomph::FiniteElement
MacroElement *	Macro_elem_pt
	Pointer to the element's macro element (NULL by default) More...

Protected Attributes inherited from oomph::GeomObject
unsigned	NLagrangian
	Number of Lagrangian (intrinsic) coordinates. More...

unsigned	Ndim
	Number of Eulerian coordinates. More...

TimeStepper *	Geom_object_time_stepper_pt

Static Protected Attributes inherited from oomph::FiniteElement
static const unsigned	Default_Initial_Nvalue = 0
	Default value for the number of values at a node. More...

static const double	Node_location_tolerance = 1.0e-14

static const unsigned	N2deriv [] = {0, 1, 3, 6}

Static Protected Attributes inherited from oomph::GeneralisedElement
static DenseMatrix< double >	Dummy_matrix

static std::deque< double * >	Dof_pt_deque

Constructor & Destructor Documentation

◆ SSPorousChannelElement() [1/2]

SSPorousChannelElement::SSPorousChannelElement ( )

inline

Constructor, there are no internal values.

496 : QElement<1,3>(), SSPorousChannelEquations() { }

SSPorousChannelEquations::SSPorousChannelEquations

SSPorousChannelEquations()

Empty Constructor, set boolean flags to be false.

Definition: bifurcation_tracking/pitchfork.cc:218

oomph::QElement< 1, 3 >

◆ SSPorousChannelElement() [2/2]

SSPorousChannelElement::SSPorousChannelElement ( )

inline

Constructor, there are no internal values.

496 : QElement<1,3>(), SSPorousChannelEquations() { }

Member Function Documentation

◆ df0dx() [1/2]

double SSPorousChannelElement::df0dx ( const unsigned & l ) const

inline

512 {return *node_pt(l)->value_pt(2);}

oomph::Data::value_pt

double * value_pt(const unsigned &i) const

Definition: nodes.h:324

oomph::FiniteElement::node_pt

Node *& node_pt(const unsigned &n)

Return a pointer to the local node n.

Definition: elements.h:2175

◆ df0dx() [2/2]

double SSPorousChannelElement::df0dx ( const unsigned & l ) const

inline

512 {return *node_pt(l)->value_pt(2);}

◆ dshape_and_dtest_eulerian_at_knot() [1/2]

double SSPorousChannelElement::dshape_and_dtest_eulerian_at_knot	(	const unsigned &	ipt,
		Shape &	psi,
		DShape &	dpsidx,
		Shape &	test,
		DShape &	dtestdx
	)

inlineprotectedvirtual

Function to compute the shape functions and derivatives w.r.t. global coords at local coordinates.

Implements SSPorousChannelEquations.

   {
    //Call the geometrical shape functions and derivatives
    double J = QElement<1,3>::dshape_eulerian_at_knot(ipt,psi,dpsidx);
  
   //Loop over the test functions and derivatives and set them equal
    //to the shape functions
    for(unsigned l=0;l<3;l++)
     {
      test[l] = psi[l];
      dtestdx(l,0) = dpsidx(l,0);
     }
    //Return the Jacobian
    return J;
   }

References J.

◆ dshape_and_dtest_eulerian_at_knot() [2/2]

double SSPorousChannelElement::dshape_and_dtest_eulerian_at_knot	(	const unsigned &	ipt,
		Shape &	psi,
		DShape &	dpsidx,
		Shape &	test,
		DShape &	dtestdx
	)

inlineprotectedvirtual

Function to compute the shape functions and derivatives w.r.t. global coords at local coordinates.

Implements SSPorousChannelEquations.

   {
    //Call the geometrical shape functions and derivatives
    double J = QElement<1,3>::dshape_eulerian_at_knot(ipt,psi,dpsidx);
  
   //Loop over the test functions and derivatives and set them equal
    //to the shape functions
    for(unsigned l=0;l<3;l++)
     {
      test[l] = psi[l];
      dtestdx(l,0) = dpsidx(l,0);
     }
    //Return the Jacobian
    return J;
   }

References J.

◆ f() [1/4]

double SSPorousChannelElement::f	(	const unsigned &	b,
		const unsigned &	i
	)		const

inlinevirtual

Return the i-th ODE variable stored at the n-th local node.

Implements SSPorousChannelEquations.

504 {return *node_pt(l)->value_pt(i);}

i

int i

Definition: BiCGSTAB_step_by_step.cpp:9

References i.

◆ f() [2/4]

double SSPorousChannelElement::f	(	const unsigned &	b,
		const unsigned &	i
	)		const

inlinevirtual

Return the i-th ODE variable stored at the n-th local node.

Implements SSPorousChannelEquations.

504 {return *node_pt(l)->value_pt(i);}

References i.

◆ f() [3/4]

double SSPorousChannelElement::f	(	const unsigned &	t,
		const unsigned &	n,
		const unsigned &	i
	)		const

inlinevirtual

Return the i-th ODE variable stored at the n-th local node at time t.

Implements SSPorousChannelEquations.

508 {return *node_pt(l)->value_pt(t,i);}

plotPSD.t

t

Definition: plotPSD.py:36

References i, and plotPSD::t.

◆ f() [4/4]

double SSPorousChannelElement::f	(	const unsigned &	t,
		const unsigned &	n,
		const unsigned &	i
	)		const

inlinevirtual

Return the i-th ODE variable stored at the n-th local node at time t.

Implements SSPorousChannelEquations.

508 {return *node_pt(l)->value_pt(t,i);}

References i, and plotPSD::t.

◆ output() [1/4]

void SSPorousChannelElement::output ( ostream & outfile )

inlinevirtual

Overload the output function.

Reimplemented from SSPorousChannelEquations.

515 {FiniteElement::output(outfile);}

output

void output(std::ostream &outfile, const unsigned &nplot)

Overload output function.

Definition: overloaded_element_body.h:490

References output().

◆ output() [2/4]

void SSPorousChannelElement::output ( ostream & outfile )

inlinevirtual

Overload the output function.

Reimplemented from SSPorousChannelEquations.

515 {FiniteElement::output(outfile);}

References output().

◆ output() [3/4]

void SSPorousChannelElement::output	(	ostream &	outfile,
		const unsigned &	Nplot
	)

inlinevirtual

Output function: x,y[,z],u,v[,w],p at Nplot^DIM points.

Reimplemented from SSPorousChannelEquations.

   {
    //Set output Vector
    Vector<double> s(1);
    //Set length of domain 
    double L=10.0;
  
    //Dummy loop over x
    for(unsigned e=0;e<20;e++)
     {
    //Tecplot head info
    outfile << "ZONE I=" << Nplot << ", J=" << Nplot << std::endl;
     
    //Loop over nodes in the element
    for(unsigned l2=0;l2<Nplot;l2++)
     {
      s[0] = -1.0 + l2*2.0/(Nplot-1);
    //Loop over the dummy nodes in the element
    for(unsigned l=0;l<Nplot;l++)
     {
      double x = e*L/20.0 + l*(L/20)/(Nplot-1);
      //Ouput x, y, u and v and f and f2
      outfile << x << " " << interpolated_x(s,0) << " ";
      outfile << -1.0*interpolated_f(s,0) << " ";
      for(unsigned i=0;i<2;i++) outfile << interpolated_f(s,i) << " ";
      outfile << std::endl;
     }
     }
    //Issue blank line
    outfile << std::endl;
     }
   }

References e(), i, L, s, and plotDoE::x.

◆ output() [4/4]

void SSPorousChannelElement::output	(	ostream &	outfile,
		const unsigned &	Nplot
	)

inlinevirtual

Output function: x,y[,z],u,v[,w],p at Nplot^DIM points.

Reimplemented from SSPorousChannelEquations.

   {
    //Set output Vector
    Vector<double> s(1);
    //Set length of domain 
    double L=10.0;
  
    //Dummy loop over x
    for(unsigned e=0;e<20;e++)
     {
    //Tecplot head info
    outfile << "ZONE I=" << Nplot << ", J=" << Nplot << std::endl;
     
    //Loop over nodes in the element
    for(unsigned l2=0;l2<Nplot;l2++)
     {
      s[0] = -1.0 + l2*2.0/(Nplot-1);
    //Loop over the dummy nodes in the element
    for(unsigned l=0;l<Nplot;l++)
     {
      double x = e*L/20.0 + l*(L/20)/(Nplot-1);
      //Ouput x, y, u and v and f and f2
      outfile << x << " " << interpolated_x(s,0) << " ";
      outfile << -1.0*interpolated_f(s,0) << " ";
      for(unsigned i=0;i<2;i++) outfile << interpolated_f(s,i) << " ";
      outfile << std::endl;
     }
     }
    //Issue blank line
    outfile << std::endl;
     }
   }

References e(), i, L, s, and plotDoE::x.

◆ required_nvalue() [1/2]

unsigned SSPorousChannelElement::required_nvalue ( const unsigned & n ) const

inlinevirtual

Required number of values at node n.

Reimplemented from oomph::FiniteElement.

500 {return Initial_Nvalue[n];}

n

const unsigned n

Definition: CG3DPackingUnitTest.cpp:11

SSPorousChannelElement::Initial_Nvalue

static const unsigned Initial_Nvalue[]

Definition: bifurcation_tracking/pitchfork.cc:470

References n.

◆ required_nvalue() [2/2]

unsigned SSPorousChannelElement::required_nvalue ( const unsigned & n ) const

inlinevirtual

Required number of values at node n.

Reimplemented from oomph::FiniteElement.

500 {return Initial_Nvalue[n];}

References n.

Member Data Documentation

◆ Initial_Nvalue

const unsigned SSPorousChannelElement::Initial_Nvalue ={2,2,2}

staticprivate

The documentation for this class was generated from the following file:

bifurcation_tracking/pitchfork.cc

Public Member Functions

Protected Member Functions

Static Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

◆ SSPorousChannelElement() [1/2]

◆ SSPorousChannelElement() [2/2]

Member Function Documentation

◆ df0dx() [1/2]

◆ df0dx() [2/2]

◆ dshape_and_dtest_eulerian_at_knot() [1/2]

◆ dshape_and_dtest_eulerian_at_knot() [2/2]

◆ f() [1/4]

◆ f() [2/4]

◆ f() [3/4]

◆ f() [4/4]

◆ output() [1/4]

◆ output() [2/4]

◆ output() [3/4]

◆ output() [4/4]

◆ required_nvalue() [1/2]

◆ required_nvalue() [2/2]

Member Data Documentation

◆ Initial_Nvalue