CG3DPackingUnitTest.cpp File Reference

#include "Mercury3D.h"
#include "Math/ExtendedMath.h"
#include "Species/LinearViscoelasticSpecies.h"
#include "Boundaries/PeriodicBoundary.h"
#include "CG/CG.h"

Classes
class	Packing

Functions
int	main ()

Variables
const unsigned	n = 5

Function Documentation

main()

int main

(

)

{
    logger(INFO,"Create cubic packing and checking the resulting forces and density.");
    Packing problem;
    problem.test();
    return 0;
}

References INFO, logger, and problem.

Variable Documentation

n

const char const char const int * n = 5

Referenced by Eigen::HessenbergDecomposition< MatrixType_ >::_compute(), Eigen::internal::absolute_split(), InterfaceProblem< ELEMENT, TIMESTEPPER >::actions_after_adapt(), UnstructuredTorusProblem< ELEMENT >::actions_after_adapt(), FSIRingProblem::actions_after_adapt(), FlowAroundHalfCylinderProblem< ELEMENT >::actions_after_adapt(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::actions_after_adapt(), FSIRingProblem::actions_after_distribute(), TurekProblem< FLUID_ELEMENT, SOLID_ELEMENT >::actions_after_distribute(), ElasticInclinedPlaneProblem< ELEMENT, TIMESTEPPER >::actions_after_implicit_timestep(), StefanBoltzmannProblem< ELEMENT >::actions_before_implicit_timestep(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::actions_before_implicit_timestep(), FlowAroundCylinderProblem< ELEMENT >::actions_before_implicit_timestep(), InclinedPlaneProblem< ELEMENT, INTERFACE_ELEMENT >::actions_before_implicit_timestep(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::actions_before_newton_convergence_check(), TwoMeshFluxAdvectionDiffusionProblem< ELEMENT >::actions_before_newton_solve(), MeltSpinningProblem< ELEMENT >::actions_before_newton_solve(), PoissonProblem< ELEMENT >::actions_before_newton_solve(), MultiPoissonProblem< ELEMENT >::actions_before_newton_solve(), RefineableTwoMeshFluxPoissonProblem< ELEMENT >::actions_before_newton_solve(), AxisymFreeSurfaceNozzleAdvDiffRobinProblem< ELEMENT >::actions_before_newton_solve(), FluxPoissonMGProblem< ELEMENT, MESH >::actions_before_newton_solve(), RefineableOneDPoissonProblem< ELEMENT >::actions_before_newton_solve(), PRefineableOneDPoissonProblem< ELEMENT >::actions_before_newton_solve(), FluxPoissonProblem< ELEMENT >::actions_before_newton_solve(), TwoMeshFluxPoissonProblem< ELEMENT >::actions_before_newton_solve(), oomph::StreamfunctionProblem::actions_before_solve(), MercuryProblem::actionsAfterTimeStep(), VolumeCoupling::actionsAfterTimeStep(), Beam::actionsBeforeOomphTimeStep(), ActivatorInhibitorProblem< ELEMENT >::ActivatorInhibitorProblem(), oomph::RefineableTetgenMesh< ELEMENT >::adapt(), oomph::RefineableGmshTetMesh< ELEMENT >::adapt(), oomph::Problem::adapt(), oomph::TreeBasedRefineableMeshBase::adapt_mesh(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::adapt_temporal_mesh(), oomph::FaceElement::add_additional_values(), oomph::Mesh::add_boundary_node(), FlowAroundCylinderProblem< ELEMENT >::add_eigenproblem(), oomph::Problem::add_eigenvector_to_dofs(), oomph::DiskLikeGeomObjectWithBoundaries::add_region_coordinates(), oomph::StefanBoltzmannRadiationBase::add_stefan_boltzmann_illumination_info(), rapidjson::GenericValue< Encoding, Allocator >::AddMember(), IntersectionOfWalls::addObject(), AirwayReopeningProblem< ELEMENT >::AirwayReopeningProblem(), aliasing_with_resize(), Eigen::internal::TensorContractionBlockMemAllocator< LhsScalar, RhsScalar >::allocateSlices(), Eigen::SparseQR< MatrixType_, OrderingType_ >::analyzePattern(), ClumpParticle::angularAccelerateClumpIterative(), AnnularQuadMesh< ELEMENT >::AnnularQuadMesh(), oomph::AnnularSpineMesh< ELEMENT >::AnnularSpineMesh(), oomph::BlockPreconditioner< MATRIX >::any_mesh_distributed(), MovingBlockProblem< ELEMENT >::apply_boundary_conditions(), ExtrudedMovingCylinderProblem< TWO_D_ELEMENT, THREE_D_ELEMENT >::apply_boundary_conditions(), PMLStructuredCubicHelmholtz< ELEMENT >::apply_boundary_conditions(), PMLHelmholtzMGProblem< ELEMENT >::apply_boundary_conditions(), FlowAroundCylinderProblem< ELEMENT >::apply_boundary_conditions(), NavierStokesProblem< ELEMENT >::apply_boundary_conditions(), PMLProblem< ELEMENT >::apply_boundary_conditions(), UnsteadyHeatProblem< ELEMENT >::apply_boundary_conditions(), TwoDDGProblem< ELEMENT >::apply_boundary_conditions(), TwoDDGProblem< ELEMENT >::apply_initial_conditions(), PMLFourierDecomposedHelmholtzProblem< ELEMENT >::apply_zero_dirichlet_boundary_conditions(), Eigen::internal::OP< MatrixSolver, MatrixType, Scalar, true >::applyOP(), Eigen::numext::arithmetic_shift_right(), Eigen::internal::array_get(), array_special_functions(), oomph::ElementWithMovingNodes::assemble_set_of_all_geometric_data(), oomph::VectorMatrix< VALUE_TYPE >::assign(), QOrrSommerfeldElement< 1, NNODE_1D >::assign_additional_local_eqn_numbers(), oomph::SpectralElement::assign_all_generic_local_eqn_numbers(), oomph::OneDLagrangianMesh< ELEMENT >::assign_default_element_gradients(), oomph::Problem::assign_eigenvector_to_dofs(), oomph::ElementWithExternalElement::assign_external_interaction_data_local_eqn_numbers(), oomph::RefineableElement::assign_hanging_local_eqn_numbers(), oomph::Mesh::assign_initial_values_impulsive(), oomph::GeneralisedElement::assign_local_eqn_numbers(), oomph::FiniteElement::assign_nodal_local_eqn_numbers(), oomph::RefineableSolidElement::assign_solid_hanging_local_eqn_numbers(), oomph::SolidFiniteElement::assign_solid_local_eqn_numbers(), VorticityRecoveryProblem< ELEMENT >::assign_synthetic_veloc_field(), AxisymmetricLinearElasticityProblem< ELEMENT, TIMESTEPPER >::assign_traction_elements(), PeriodicLoadProblem< ELEMENT >::assign_traction_elements(), RefineablePeriodicLoadProblem< ELEMENT >::assign_traction_elements(), FourierDecomposedTimeHarmonicLinearElasticityProblem< ELEMENT >::assign_traction_elements(), oomph::OneDLagrangianMesh< ELEMENT >::assign_undeformed_positions(), ShellMesh< ELEMENT >::assign_undeformed_positions(), FlatPlateMesh< ELEMENT >::assign_undeformed_positions(), oomph::CircularCylindricalShellMesh< ELEMENT >::assign_undeformed_positions(), Eigen::SparseMatrix< Scalar_, Options_, StorageIndex_ >::assignDiagonal(), sphericalHarmonics::associatedLegendrePolynomials(), asum(), oomph::SolarRadiationBase::atmospheric_radiation(), oomph::Multi_domain_functions::aux_setup_multi_domain_interaction(), AxialSolidQuarterTubeMesh< ELEMENT, INTERFACE_ELEMENT >::AxialSolidQuarterTubeMesh(), AxialSpineQuarterTubeMesh< ELEMENT, INTERFACE_ELEMENT >::AxialSpineQuarterTubeMesh(), AxisymmetricVibratingShellProblem< ELEMENT >::AxisymmetricVibratingShellProblem(), oomph::DenseLU::backsub(), oomph::MumpsSolver::backsub(), oomph::SuperLUSolver::backsub_serial(), oomph::SuperLUSolver::backsub_transpose_serial(), oomph::SolidICProblem::backup_original_state(), oomph::BackupMeshForProjection< GEOMETRIC_ELEMENT >::BackupMeshForProjection(), BaseStateProblem< BASE_ELEMENT >::BaseStateProblem(), Eigen::Spline< Scalar_, Dim_, Degree_ >::BasisFunctionDerivativesImpl(), bench(), bench_mnk(), bench_prod(), Global_Parameters::BesselJ(), Global_Parameters::BesselY(), CRBond_Bessel::bessikna(), CRBond_Bessel::bessiknb(), CRBond_Bessel::bessikv(), CRBond_Bessel::bessjyna(), CRBond_Bessel::bessjynb(), CRBond_Bessel::bessjyv(), Eigen::internal::bicgstab(), binom(), oomph::BlockPreconditioner< MATRIX >::block_setup(), BlockCompressionProblem< ELEMENT >::BlockCompressionProblem(), Eigen::internal::lapacke_helpers::lapacke_partial_lu< Scalar, StorageOrder >::blocked_lu(), Eigen::internal::blueNorm_impl(), oomph::AxisymmetricLinearElasticityEquationsBase::body_force(), oomph::LinearElasticityEquationsBase< DIM >::body_force(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::body_force(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::body_force(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::body_force(), oomph::PVDEquationsBase< DIM >::body_force(), oomph::Mesh::boundary_node_pt(), oomph::SolidMesh::boundary_node_pt(), ProblemParameters::boundary_traction(), bug1105(), bug_1281(), bug_1308(), oomph::CRMatrix< T >::build(), oomph::CCMatrix< T >::build(), oomph::RefineableQElement< 1 >::build(), oomph::RefineableSolidQElement< 2 >::build(), oomph::Mesh::build_face_mesh(), oomph::TetgenMesh< ELEMENT >::build_from_scaffold(), oomph::TriangleMesh< ELEMENT >::build_from_scaffold(), oomph::AddedMainNumberingLookup::build_identity_map(), oomph::GmshTetMesh< ELEMENT >::build_it(), RefineableUnsteadyHeatProblem< ELEMENT >::build_mesh(), oomph::ExtrudedCubeMeshFromQuadMesh< ELEMENT >::build_mesh(), RectangularWomersleyImpedanceTube< ELEMENT >::build_mesh_and_apply_boundary_conditions(), oomph::TetgenMesh< ELEMENT >::build_tetgenio(), oomph::TwoLayerSpineMesh< BASE_ELEMENT >::build_two_layer_mesh(), oomph::VectorMatrix< VALUE_TYPE >::build_vectors(), oomph::VectorMatrix< VALUE_TYPE >::build_vectors_and_value(), oomph::CRMatrix< T >::build_without_copy(), oomph::CCMatrix< T >::build_without_copy(), buildProblem(), oomph::FaceElement::bulk_node_number(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::butterfly_1D_merge(), oomph::Mesh::calculate_predictions(), CapProblem< ELEMENT >::CapProblem(), CRBond_Bessel::cbessikna(), CRBond_Bessel::cbessiknb(), CRBond_Bessel::cbessikv(), CRBond_Bessel::cbessjyna(), CRBond_Bessel::cbessjynb(), CRBond_Bessel::cbessjyva(), oomph::CCMatrix< T >::CCMatrix(), RotatingProblem< ELEMENT >::change_length(), oomph::Hankel_functions_for_helmholtz_problem::CHankel_first(), check_eigensolver_for_given_mat(), FourierDecomposedHelmholtzProblem< ELEMENT >::check_gamma(), check_indexed_view(), oomph::RefineableQElement< 3 >::check_integrity(), VorticityRecoveryProblem< ELEMENT >::check_smoothed_vorticity(), check_tutorial_examples(), VolumeCoupling::checkParticlesInFiniteElems(), Eigen::internal::chkder(), Eigen::ChordLengths(), oomph::CircularPenetrator::CircularPenetrator(), oomph::InexactSubBiharmonicPreconditioner::clean_up_memory(), oomph::TreeForest::close_hanging_node_files(), Eigen::internal::count_bits_impl< BitsType, EnableIf >::clz(), Coil::Coil(), compact_size_triple(), RectangularDrivenCavityProblem< ELEMENT >::compare_assembly_strategies(), PacketBlockSet< Scalar, StorageOrder, n >::comparePacketBlock(), oomph::TreeBasedRefineableMeshBase::complete_hanging_nodes(), DarcyProblem< ELEMENT >::complete_problem_setup(), AxisymmetricVibratingShellProblem< ELEMENT >::complete_problem_setup(), VibratingShellProblem< ELEMENT >::complete_problem_setup(), HomogenisationProblem< ELEMENT >::complete_problem_setup(), ElasticAnnulusProblem< ELASTICITY_ELEMENT >::complete_problem_setup(), oomph::PerturbedSpineElement< ELEMENT >::complete_setup_of_dependencies(), oomph::SpineElement< ELEMENT >::complete_setup_of_dependencies(), Eigen::SelfAdjointEigenSolver< MatrixType_ >::compute(), Eigen::ArpackGeneralizedSelfAdjointEigenSolver< MatrixType, MatrixSolver, BisSPD >::compute(), Eigen::IterScaling< MatrixType_ >::compute(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::compute_1D_Butterfly(), oomph::HelmholtzBCElementBase< ELEMENT >::compute_contribution_to_fourier_components(), oomph::HelmholtzDtNMesh< ELEMENT >::compute_fourier_components(), oomph::HelmholtzDtNBoundaryElement< ELEMENT >::compute_gamma_contribution(), oomph::FourierDecomposedHelmholtzDtNBoundaryElement< ELEMENT >::compute_gamma_contribution(), oomph::RefineableTetgenMesh< ELEMENT >::compute_volume_target(), oomph::RefineableTetMeshBase::compute_volume_target(), Eigen::BDCSVD< MatrixType_, Options_ >::computeBaseCase(), ScaleCoupling< M, O >::computeCouplingForce(), Eigen::internal::computeFromTridiagonal_impl(), HGrid::computeHashBucketIndex(), ScaleCoupling< M, O >::computeNodalCouplingForces(), Eigen::internal::computeProductBlockingSizes(), ScaleCoupling< M, O >::computeProjectionMatrix(), SCoupling< M, O >::computeSCouplingForcesFromTriangles(), Eigen::BDCSVD< MatrixType_, Options_ >::computeSingVals(), Eigen::BDCSVD< MatrixType_, Options_ >::computeSingVecs(), sphericalHarmonics::computeSquaredFactorialValues(), Eigen::BDCSVD< MatrixType_, Options_ >::computeSVDofM(), Eigen::internal::conjugate_gradient(), Global_Parameters::constant_pressure(), Global_Physical_Variables::constant_pressure(), oomph::SCoupledElement< ELEMENT >::construct_boundary_node(), oomph::FiniteElement::construct_boundary_node(), oomph::SolidFiniteElement::construct_boundary_node(), oomph::DGElement::construct_boundary_nodes_and_faces(), oomph::SCoupledElement< ELEMENT >::construct_node(), oomph::FiniteElement::construct_node(), oomph::SolidFiniteElement::construct_node(), oomph::DGElement::construct_nodes_and_faces(), ConvectionProblem< NST_ELEMENT, AD_ELEMENT >::ConvectionProblem(), Multipole::convertMultipoleToLocal(), oomph::TriangleMesh< ELEMENT >::convex_hull(), coo_tocsr(), copy_back(), oomph::LinearisedQCrouzeixRaviartElement::copy_efunction_to_normalisation(), Eigen::internal::count_leading_zeros(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::countnz(), SolidProblem< ELEMENT_TYPE >::countPinned(), Eigen::internal::covar(), oomph::TwoDimensionalPMLHelper::create_bottom_left_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_bottom_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_bottom_right_pml_mesh(), MeltContactProblem< ELEMENT >::create_contact_elements(), SolarRadiationProblem< ELEMENT >::create_contact_elements(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::create_dependent_position_elements(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_fluid_traction_elements(), UnstructuredFluidProblem< ELEMENT >::create_fluid_traction_elements(), MeltContactProblem< ELEMENT >::create_flux_elements(), SolarRadiationProblem< ELEMENT >::create_flux_elements(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_fsi_traction_elements(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::create_interface_elements(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_lagrange_multiplier_elements(), oomph::TwoDimensionalPMLHelper::create_left_pml_mesh(), oomph::GmshTetScaffoldMesh::create_mesh_from_msh_file(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_parallel_flow_lagrange_elements(), UnstructuredFluidProblem< ELEMENT >::create_parallel_outflow_lagrange_elements(), PressureWaveFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_poro_face_elements(), AxiPoroProblem< ELEMENT, TIMESTEPPER >::create_pressure_elements(), DarcyProblem< ELEMENT >::create_pressure_elements(), oomph::TwoDimensionalPMLHelper::create_right_pml_mesh(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::create_slave_position_elements(), PressureWaveFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::create_solid_traction_elements(), oomph::TwoDimensionalPMLHelper::create_top_left_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_top_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_top_right_pml_mesh(), UnstructuredSolidProblem< ELEMENT, MESH >::create_traction_elements(), SCoupling< M, O >::createDPMWallsFromFiniteElems(), InfiniteWall::createVTK(), MercuryProblem::createWalls(), oomph::CRMatrix< T >::CRMatrix(), tetgenmesh::cross(), Eigen::internal::cs_wclear(), csr_sort_indices(), Eigen::internal::count_bits_impl< BitsType, EnableIf >::ctz(), CylinderAndInterfaceMesh< ELEMENT >::CylinderAndInterfaceMesh(), oomph::CylinderWithFlagMesh< ELEMENT >::CylinderWithFlagMesh(), oomph::AxisymmetricPoroelasticityEquations::d2u_dt2(), oomph::PoroelasticityEquations< DIM >::d2u_dt2(), oomph::AxisymmetricLinearElasticityEquationsBase::d2u_dt2_axisymmetric_linear_elasticity(), oomph::LinearWaveEquations< DIM >::d2u_dt2_lin_wave(), oomph::LinearElasticityEquationsBase< DIM >::d2u_dt2_linear_elasticity(), oomph::ProjectableAxisymmetricCrouzeixRaviartElement< CROUZEIX_RAVIART_ELEMENT >::data_values_of_field(), oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >::data_values_of_field(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::data_values_of_field(), oomph::GeneralisedNewtonianProjectableAxisymmetricCrouzeixRaviartElement< CROUZEIX_RAVIART_ELEMENT >::data_values_of_field(), oomph::ProjectableGeneralisedNewtonianCrouzeixRaviartElement< CROUZEIX_RAVIART_ELEMENT >::data_values_of_field(), oomph::ProjectableCrouzeixRaviartElement< CROUZEIX_RAVIART_ELEMENT >::data_values_of_field(), oomph::AdvectionDiffusionReactionEquations< NREAGENT, DIM >::dc_dt_adv_diff_react(), oomph::RefineableElement::deactivate_element(), oomph::TetgenMesh< ELEMENT >::deep_copy_of_tetgenio(), InterfaceProblem< ELEMENT, TIMESTEPPER >::deform_free_surface(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::deform_interface(), TwoLayerInterfaceProblem< ELEMENT >::deform_interface(), MeshDeformation::deform_mesh(), UnstructuredImmersedEllipseProblem< ELEMENT >::delete_drag_elements(), oomph::DenseMatrix< T >::DenseMatrix(), Eigen::derivativesImpl(), oomph::SpectralElement::describe_local_dofs(), oomph::TPVDElement< DIM, NNODE_1D >::describe_local_dofs(), oomph::FiniteElement::describe_nodal_local_dofs(), oomph::SolidFiniteElement::describe_solid_local_dofs(), Eigen::PermutationBase< Derived >::determinant(), Eigen::NumericalDiff< Functor_, mode >::df(), DenseLM< Scalar >::df(), sparseGaussianTest< Scalar >::df(), hybrj_functor::df(), SSPorousChannelEquations::df_dt(), Eigen::DGMRES< MatrixType_, Preconditioner_ >::dgmres(), Eigen::DGMRES< MatrixType_, Preconditioner_ >::dgmresCycle(), Eigen::internal::dhs_pack< double, DataMapper, Packet2d, StorageOrder, PanelMode, true >::dhs_copy(), Eigen::internal::dhs_pack< double, DataMapper, Packet2d, StorageOrder, PanelMode, false >::dhs_copy(), Eigen::internal::dhs_pack< Scalar, DataMapper, Packet, StorageOrder, PanelMode, UseLhs >::dhs_copy(), dif_rmse(), Eigen::TensorMap< PlainObjectType, Options_, MakePointer_ >::dimension(), Eigen::TensorRef< PlainObjectType >::dimension(), Eigen::Tensor< Scalar_, NumIndices_, Options_, IndexType_ >::dimension(), Eigen::TensorFixedSize< Scalar_, Dimensions_, Options_, IndexType >::dimension(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::discrete_times(), oomph::DiskWithTorusAroundEdgeTetMeshFacetedSurface::DiskWithTorusAroundEdgeTetMeshFacetedSurface(), oomph::DiskWithTwoLayersTetMeshFacetedSurface::DiskWithTwoLayersTetMeshFacetedSurface(), divacNorm(), Eigen::internal::TensorIntDivisor< int32_t, true >::divide(), Eigen::BDCSVD< MatrixType_, Options_ >::divide(), oomph::Orthpoly::dlegendre(), oomph::FiniteElement::dnodal_position_dt(), oomph::FiniteElement::dnodal_position_gen_dt(), oomph::LinearisedAxisymmetricNavierStokesEquations::dnodal_position_perturbation_dt_lin_axi_nst(), oomph::DGFaceElement::dnumerical_flux_du(), oomph::Z2ErrorEstimator::doc_flux(), MeltContactProblem< ELEMENT >::doc_solution(), SolarRadiationProblem< ELEMENT >::doc_solution(), ContactProblem< ELEMENT >::doc_solution(), TwoLayerInterfaceProblem< ELEMENT >::doc_solution(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::doc_solution(), Eigen::EigenSolver< MatrixType_ >::doComputeEigenvectors(), Eigen::ComplexEigenSolver< MatrixType_ >::doComputeEigenvectors(), oomph::Mesh::does_pointer_correspond_to_mesh_data(), Eigen::internal::dogleg(), oomph::DoubleMultiVector::dot(), oomph::DoubleVector::dot(), dot(), oomph::DoubleVectorHaloScheme::DoubleVectorHaloScheme(), oomph::GeomObject::dposition_dt(), oomph::ImmersedRigidBodyElement::dposition_dt(), oomph::AxisymmetricPoroelasticityEquations::dq_edge_dt(), oomph::PoroelasticityEquations< DIM >::dq_edge_dt(), oomph::AxisymmetricPoroelasticityEquations::dq_internal_dt(), oomph::PoroelasticityEquations< DIM >::dq_internal_dt(), dsdot(), oomph::ClampedHermiteShellBoundaryConditionElement::dshape_local(), oomph::AxisymmetricPoroelasticityEquations::du_dt(), oomph::PoroelasticityEquations< DIM >::du_dt(), oomph::AdvectionDiffusionEquations< DIM >::du_dt_adv_diff(), oomph::AxisymAdvectionDiffusionEquations::du_dt_axi_adv_diff(), oomph::AxisymmetricNavierStokesEquations::du_dt_axi_nst(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::du_dt_axi_nst(), oomph::AxisymmetricLinearElasticityEquationsBase::du_dt_axisymmetric_linear_elasticity(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::du_dt_cons_adv_diff(), oomph::du_dt_cons_axisym_adv_diff(), oomph::FluxTransportEquations< DIM >::du_dt_flux_transport(), oomph::LinearisedAxisymmetricNavierStokesEquations::du_dt_lin_axi_nst(), oomph::LinearWaveEquations< DIM >::du_dt_lin_wave(), oomph::LinearisedAxisymmetricNavierStokesEquations::du_dt_linearised_axi_nst(), oomph::LinearisedNavierStokesEquations::du_dt_linearised_nst(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::du_dt_nst(), oomph::NavierStokesEquations< DIM >::du_dt_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::du_dt_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::du_dt_nst(), oomph::PolarNavierStokesEquations::du_dt_pnst(), oomph::SphericalAdvectionDiffusionEquations::du_dt_spherical_adv_diff(), oomph::SphericalNavierStokesEquations::du_dt_spherical_nst(), oomph::SpaceTimeUnsteadyHeatEquations< SPATIAL_DIM >::du_dt_ust_heat(), oomph::SpaceTimeUnsteadyHeatMixedOrderEquations< SPATIAL_DIM >::du_dt_ust_heat(), oomph::UnsteadyHeatEquations< DIM >::du_dt_ust_heat(), oomph::WomersleyEquations< DIM >::du_dt_womersley(), BiharmonicTestFunctions2::dudn_E(), BiharmonicTestFunctions2::dudn_N(), BiharmonicTestFunctions2::dudn_W(), oomph::Problem::dump(), oomph::TRaviartThomasDarcyElement< ORDER >::edge_flux_interpolation_point(), oomph::TRaviartThomasDarcyElement< ORDER >::edge_flux_interpolation_point_global(), oomph::TPoroelasticityElement< ORDER >::edge_gauss_point(), oomph::TPoroelasticityElement< ORDER >::edge_gauss_point_global(), EIGEN_CAT(), EIGEN_DECLARE_TEST(), Eigen::numext::EIGEN_MATHFUNC_RETVAL(), Eigen::internal::eigen_pastix(), eigensolver_generic_extra(), Eigen::EigenSolver< MatrixType_ >::eigenvectors(), ElasticInterfaceProblem< ELEMENT, TIMESTEPPER >::ElasticInterfaceProblem(), ElasticRefineableQuarterCircleSectorMesh< ELEMENT >::ElasticRefineableQuarterCircleSectorMesh(), ElasticRefineableTwoLayerMesh< ELEMENT >::ElasticRefineableTwoLayerMesh(), ElasticTwoLayerMesh< ELEMENT >::ElasticTwoLayerMesh(), oomph::ElasticUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::ElasticUpdateFluidInterfaceElement(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::element_node_index_to_pressure_node_index(), oomph::PerturbedSpineMesh::element_node_pt(), oomph::SolidMesh::element_node_pt(), oomph::SpineMesh::element_node_pt(), ElementAnalysis::ElementAnalysis(), Eigen::TensorContractionEvaluatorBase< Derived >::evalGemmPartial(), Eigen::SparseQR_QProduct< SparseQRType, Derived >::evalTo(), Eigen::internal::HessenbergDecompositionMatrixHReturnType< MatrixType >::evalTo(), Eigen::internal::evaluateProductBlockingSizesHeuristic(), MeshDeformation::exact_normal(), ProblemParameters::exact_soln(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::face_local_coordinate_of_flux_interpolation_point(), oomph::TRaviartThomasDarcyElement< ORDER >::face_local_coordinate_of_flux_interpolation_point(), SingleElement::face_normal(), oomph::DenseLU::factorise(), oomph::MumpsSolver::factorise(), oomph::SuperLUSolver::factorise_serial(), Eigen::SparseQR< MatrixType_, OrderingType_ >::factorize(), Eigen::SparseLU< MatrixType_, OrderingType_ >::factorize(), Eigen::IncompleteLUT< Scalar_, StorageIndex_ >::factorize(), Eigen::IncompleteCholesky< Scalar, UpLo_, OrderingType_ >::factorize(), Eigen::internal::kiss_cpx_fft< Scalar_ >::factorize(), Eigen::internal::fdjac1(), RefineableBinArray::fill_bin_array(), NonRefineableBinArray::fill_bin_by_diffusion(), oomph::SpineLineMarangoniFluidInterfaceElement< ELEMENT >::fill_in_contribution_to_jacobian(), oomph::FixedVolumeSpineLineMarangoniFluidInterfaceElement< ELEMENT >::fill_in_contribution_to_jacobian(), oomph::SpineAxisymmetricMarangoniSurfactantFluidInterfaceElement< ELEMENT >::fill_in_contribution_to_jacobian(), oomph::SpineLineMarangoniSurfactantFluidInterfaceElement< ELEMENT >::fill_in_contribution_to_jacobian(), oomph::SpinePointMarangoniSurfactantFluidInterfaceBoundingElement< ELEMENT >::fill_in_contribution_to_jacobian(), oomph::IMRODEElement::fill_in_contribution_to_jacobian(), oomph::ODEElement::fill_in_contribution_to_jacobian(), oomph::ClampedSlidingHermiteBeamBoundaryConditionElement::fill_in_contribution_to_residuals(), oomph::KirchhoffLoveBeamEquations::fill_in_contribution_to_residuals_beam(), oomph::KirchhoffLoveShellEquations::fill_in_contribution_to_residuals_shell(), oomph::NonlinearSurfaceContactElement< ELEMENT >::fill_in_contribution_to_residuals_surface_contact(), oomph::LinearSurfaceContactElement< ELEMENT >::fill_in_contribution_to_residuals_surface_contact(), oomph::HeatedLinearSurfaceContactElement< ELEMENT >::fill_in_contribution_to_residuals_surface_contact(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::fill_in_generic_contribution_to_residuals_fourier_decomp_time_harmonic_linear_elasticity(), GelfandBratuElement< NNODE_1D >::fill_in_generic_dresidual_contribution(), GelfandBratuElement< NNODE_1D >::fill_in_generic_residual_contribution(), oomph::GeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::RefineableGeneralisedNewtonianAxisymmetricNavierStokesEquations::fill_in_generic_residual_contribution_axi_nst(), oomph::BiharmonicEquations< DIM >::fill_in_generic_residual_contribution_biharmonic(), oomph::BiharmonicFluxElement< DIM >::fill_in_generic_residual_contribution_biharmonic_flux(), oomph::FourierDecomposedHelmholtzEquations::fill_in_generic_residual_contribution_fourier_decomposed_helmholtz(), oomph::LineFluidInterfaceBoundingElement::fill_in_generic_residual_contribution_interface_boundary(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::RefineableGeneralisedNewtonianNavierStokesEquations< DIM >::fill_in_generic_residual_contribution_nst(), oomph::PMLFourierDecomposedHelmholtzEquations::fill_in_generic_residual_contribution_pml_fourier_decomposed_helmholtz(), oomph::FiniteElement::fill_in_jacobian_from_nodal_by_fd(), oomph::RefineableElement::fill_in_jacobian_from_nodal_by_fd(), oomph::SolidFiniteElement::fill_in_jacobian_from_solid_position_by_fd(), oomph::AxisymmetricQAdvectionCrouzeixRaviartElement::fill_in_off_diagonal_jacobian_blocks_by_fd(), oomph::PseudoSolidNodeUpdateElement< BASIC, SOLID >::fill_in_shape_derivatives(), oomph::PseudoSolidNodeUpdateElement< BASIC, SOLID >::fill_in_shape_derivatives_by_fd(), oomph::RefineablePseudoSolidNodeUpdateElement< BASIC, SOLID >::fill_in_shape_derivatives_by_fd(), oomph::LAPACK_QZ::find_eigenvalues(), oomph::BinaryTreeForest::find_neighbours(), oomph::OcTreeForest::find_neighbours(), oomph::QuadTreeForest::find_neighbours(), find_pivot(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::findGoodComposite(), NurbsUtils::findSpan(), FishPoissonProblem< ELEMENT >::FishPoissonProblem(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::fixupL(), FlatPlateMesh< ELEMENT >::FlatPlateMesh(), FlowAroundHalfCylinderProblem< ELEMENT >::FlowAroundHalfCylinderProblem(), oomph::AxisymmetricPoroelasticityEquations::fluid_body_force(), ExactSolution::flux_into_bulk(), FluxPoissonMGProblem< ELEMENT, MESH >::FluxPoissonMGProblem(), FluxPoissonProblem< ELEMENT >::FluxPoissonProblem(), oomph::FoldHandler::FoldHandler(), oomph::PoroelasticityEquations< DIM >::force_fluid(), oomph::PoroelasticityEquations< DIM >::force_solid(), FreeSurfaceRotationProblem< ELEMENT >::FreeSurfaceRotationProblem(), FSIRingProblem::FSIRingProblem(), Eigen::internal::gemm_blocking_space< StorageOrder, LhsScalar_, RhsScalar_, MaxRows, MaxCols, MaxDepth, KcFactor, false >::gemm_blocking_space(), Eigen::internal::gemm_kern_avx512(), TurekProblem< FLUID_ELEMENT, SOLID_ELEMENT >::generic_actions_after(), oomph::RefineableSolidElement::geom_data_pt(), oomph::ElementWithMovingNodes::geometric_data_local_eqn(), oomph::GeompackQuadScaffoldMesh::GeompackQuadScaffoldMesh(), oomph::RefineableQElement< 3 >::get_bcs(), oomph::RefineableQElement< 3 >::get_boundaries(), get_compact_vector(), oomph::ScaleCoupledElement< ELEMENT >::get_coupling_residual(), oomph::ScaleCoupledElement< ELEMENT >::get_coupling_weight(), RefineableQAxisymCrouzeixRaviartBoussinesqElement::get_dbody_force_axi_nst_dexternal_element_data(), QAxisymCrouzeixRaviartElementWithExternalElement::get_dbody_force_axi_nst_dexternal_element_data(), RefineableQCrouzeixRaviartElementWithExternalElement< DIM >::get_dbody_force_nst_dexternal_element_data(), RefineableQCrouzeixRaviartElementWithTwoExternalElement< DIM >::get_dbody_force_nst_dexternal_element_data(), QCrouzeixRaviartElementWithTwoExternalElement< DIM >::get_dbody_force_nst_dexternal_element_data(), oomph::RefineableNavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_dbody_force_nst_dexternal_element_data(), oomph::NavierStokesBoussinesqElement< NST_ELEMENT, AD_ELEMENT >::get_dbody_force_nst_dexternal_element_data(), oomph::Problem::get_derivative_wrt_global_parameter(), oomph::MultiPoissonEquations< DIM, NFIELDS >::get_dof_numbers_for_unknowns(), oomph::PseudoElasticBulkElement< ELEMENT >::get_dof_numbers_for_unknowns(), RefineableBuoyantQCrouzeixRaviartElement< DIM >::get_dof_numbers_for_unknowns(), RefineableQAdvectionDiffusionElementWithExternalElement< DIM >::get_dof_numbers_for_unknowns(), oomph::AxisymmetricLinearElasticityEquationsBase::get_dof_numbers_for_unknowns(), oomph::AxisymmetricQCrouzeixRaviartElement::get_dof_numbers_for_unknowns(), oomph::AxisymmetricQTaylorHoodElement::get_dof_numbers_for_unknowns(), oomph::AxisymmetricTCrouzeixRaviartElement::get_dof_numbers_for_unknowns(), oomph::AxisymmetricTTaylorHoodElement::get_dof_numbers_for_unknowns(), oomph::FSIHermiteBeamElement::get_dof_numbers_for_unknowns(), oomph::BiharmonicEquations< DIM >::get_dof_numbers_for_unknowns(), oomph::TDisplacementBasedFoepplvonKarmanElement< NNODE_1D >::get_dof_numbers_for_unknowns(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::get_dof_numbers_for_unknowns(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::get_dof_numbers_for_unknowns(), oomph::GeneralisedNewtonianAxisymmetricTCrouzeixRaviartElement::get_dof_numbers_for_unknowns(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::get_dof_numbers_for_unknowns(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::get_dof_numbers_for_unknowns(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::get_dof_numbers_for_unknowns(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::get_dof_numbers_for_unknowns(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::get_dof_numbers_for_unknowns(), oomph::LinearElasticityEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::RefineableAdvectionDiffusionBoussinesqElement< AD_ELEMENT, NST_ELEMENT >::get_dof_numbers_for_unknowns(), oomph::QCrouzeixRaviartElement< DIM >::get_dof_numbers_for_unknowns(), oomph::QTaylorHoodElement< DIM >::get_dof_numbers_for_unknowns(), oomph::TCrouzeixRaviartElement< DIM >::get_dof_numbers_for_unknowns(), oomph::TTaylorHoodElement< DIM >::get_dof_numbers_for_unknowns(), oomph::PMLHelmholtzEquations< DIM >::get_dof_numbers_for_unknowns(), oomph::PMLHelmholtzFluxElement< ELEMENT >::get_dof_numbers_for_unknowns(), oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::FSIDiagHermiteShellElement::get_dof_numbers_for_unknowns(), oomph::ClampedHermiteShellBoundaryConditionElement::get_dof_numbers_for_unknowns(), oomph::PVDEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::PVDEquationsWithPressure< DIM >::get_dof_numbers_for_unknowns(), oomph::FSISolidTractionElement< ELEMENT, DIM >::get_dof_numbers_for_unknowns(), oomph::QTaylorHoodSpaceTimeElement< DIM >::get_dof_numbers_for_unknowns(), oomph::QSphericalCrouzeixRaviartElement::get_dof_numbers_for_unknowns(), oomph::QSphericalTaylorHoodElement::get_dof_numbers_for_unknowns(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquationsBase::get_dof_numbers_for_unknowns(), oomph::TimeHarmonicLinearElasticityEquationsBase< DIM >::get_dof_numbers_for_unknowns(), oomph::SpaceTimeNavierStokesEquations< DIM >::get_du_dt(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::get_du_dt(), oomph::FoldHandler::get_eigenfunction(), oomph::PitchForkHandler::get_eigenfunction(), oomph::HopfHandler::get_eigenfunction(), oomph::Z2ErrorEstimator::get_element_errors(), oomph::KirchhoffLoveShellEquations::get_energy(), oomph::KirchhoffLoveBeamEquations::get_energy(), oomph::TemplateFreeUnsteadyHeatBaseFaceElement::get_flux(), oomph::StefanBoltzmannUnsteadyHeatFluxElement< ELEMENT >::get_flux(), oomph::Problem::get_hessian_vector_products(), oomph::SpectralPeriodicOrbitElement< NNODE_1D >::get_interpolated_values(), oomph::DGFaceElement::get_interpolation_data(), oomph::DGSpectralScalarAdvectionElement< 1, NNODE_1D >::get_inverse_mass_matrix_times_residuals(), oomph::DGElement::get_inverse_mass_matrix_times_residuals(), oomph::FoldHandler::get_jacobian(), oomph::PitchForkHandler::get_jacobian(), oomph::HopfHandler::get_jacobian(), ThreeDimBethertonProblem< ELEMENT >::get_lambda(), oomph::PolarCrouzeixRaviartElement::get_load_data(), oomph::PolarTaylorHoodElement::get_load_data(), oomph::SCoupledElement< ELEMENT >::get_nodal_coupling_residual(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::get_node_at_local_coordinate(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::get_node_at_local_coordinate(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::get_node_at_local_coordinate(), oomph::AxisymmetricPoroelasticityTractionElement< ELEMENT >::get_pressure(), oomph::DarcyFaceElement< ELEMENT >::get_pressure(), oomph::PoroelasticityFaceElement< ELEMENT >::get_pressure(), TwoNodePoissonElement::get_residuals(), oomph::RefineableSolidQElement< 3 >::get_solid_bcs(), oomph::TimeHarmonicFourierDecomposedLinearElasticityEquations::get_strain(), oomph::KirchhoffLoveShellEquations::get_strain_and_bend(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::get_traction(), oomph::AxisymmetricPoroelasticityTractionElement< ELEMENT >::get_traction(), oomph::LinearElasticityTractionElement< ELEMENT >::get_traction(), oomph::PoroelasticityFaceElement< ELEMENT >::get_traction(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::get_traction(), oomph::NavierStokesTractionElement< ELEMENT >::get_traction(), oomph::NavierStokesSpaceTimeTractionElement< ELEMENT >::get_traction(), oomph::NavierStokesMixedOrderSpaceTimeTractionElement< ELEMENT >::get_traction(), oomph::AxisymmetricSolidTractionElement< ELEMENT >::get_traction(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::get_traction(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElement< ELEMENT >::get_traction(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::get_traction(), oomph::SolidTractionElement< ELEMENT >::get_traction(), oomph::FSISolidTractionElement< ELEMENT, DIM >::get_traction(), SheetGlueProblem< ELEMENT >::get_unique_nodes_that_meet_sidewalls(), oomph::SpectralPeriodicOrbitElement< NNODE_1D >::get_Z2_flux(), SolidProblem< ELEMENT_TYPE >::getDomainSize(), SCoupling< M, O >::getElementBoundingBox(), getLinearFit(), BaseWall::getLinePlaneIntersect(), InteractionHandler::getMeanOverlap(), TimeDependentPeriodicBoundary::getPlanewiseShift(), ParticleHandler::getPSD(), SCoupling< M, O >::getSCoupledElements(), BasicIntersectionOfWalls::getVTK(), BasicUnionOfWalls::getVTK(), ElementAnalysis::getXiCenter(), AxisymmetricVibratingShellProblem< ELEMENT >::global_temporal_error_norm(), VibratingShellProblem< ELEMENT >::global_temporal_error_norm(), InterfaceProblem< ELEMENT, TIMESTEPPER >::global_temporal_error_norm(), Eigen::internal::h_array_apply_and_reduce(), Eigen::internal::h_array_reverse(), Eigen::internal::h_array_zip_and_reduce(), Eigen::DynamicSGroup::h_permute(), oomph::HalfRectangleWithHoleMesh< ELEMENT >::HalfRectangleWithHoleMesh(), Global_Parameters::Hankel_first(), oomph::Hankel_functions_for_helmholtz_problem::Hankel_first(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::heap_relax_snode(), Eigen::NumTraits< type2index< n > >::highest(), oomph::Hijacked< ELEMENT >::hijack_external_value(), oomph::Hijacked< ELEMENT >::hijack_internal_value(), oomph::Hijacked< ELEMENT >::hijack_nodal_position_value(), oomph::Hijacked< ELEMENT >::hijack_nodal_spine_value(), oomph::Hijacked< ELEMENT >::hijack_nodal_value(), oomph::HopfHandler::HopfHandler(), HorizontalScrew::HorizontalScrew(), Eigen::HybridNonLinearSolver< FunctorType, Scalar >::hybrd1(), Eigen::HybridNonLinearSolver< FunctorType, Scalar >::hybrj1(), Eigen::Hyperplane< Scalar_, AmbientDim_, Options_ >::Hyperplane(), oomph::FiniteElement::identify_field_data_for_interactions(), oomph::RefineableElement::identify_field_data_for_interactions(), SegregatedFSICollapsibleChannelProblem< ELEMENT >::identify_fluid_and_solid_dofs(), oomph::ElementWithMovingNodes::identify_geometric_data(), oomph::SolidFiniteElement::identify_geometric_data(), oomph::FSIAxisymmetricQTaylorHoodElement::identify_load_data(), oomph::AxisymmetricTCrouzeixRaviartElement::identify_load_data(), oomph::AxisymmetricTTaylorHoodElement::identify_load_data(), oomph::GeneralisedNewtonianAxisymmetricTCrouzeixRaviartElement::identify_load_data(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::identify_load_data(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::identify_load_data(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::identify_load_data(), oomph::RefineableGeneralisedNewtonianQCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::identify_load_data(), oomph::QCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::QTaylorHoodElement< DIM >::identify_load_data(), oomph::RefineableQTaylorHoodElement< DIM >::identify_load_data(), oomph::RefineableQCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::TCrouzeixRaviartElement< DIM >::identify_load_data(), oomph::TTaylorHoodElement< DIM >::identify_load_data(), oomph::QTaylorHoodSpaceTimeElement< DIM >::identify_load_data(), oomph::RefineableQTaylorHoodSpaceTimeElement< DIM >::identify_load_data(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< 2 >::identify_load_data(), oomph::RefineableQTaylorHoodMixedOrderSpaceTimeElement< DIM >::identify_load_data(), oomph::QSphericalCrouzeixRaviartElement::identify_load_data(), oomph::QSphericalTaylorHoodElement::identify_load_data(), oomph::BiharmonicFluidProblem< DIM >::impose_fluid_flow_on_edge(), oomph::BiharmonicFluidProblem< DIM >::impose_solid_boundary_on_edge(), oomph::BiharmonicFluidProblem< DIM >::impose_traction_free_edge(), oomph::CRDoubleMatrix::inf_norm(), Eigen::KdBVH< Scalar_, Dim_, _Object >::init(), oomph::BrethertonSpineMesh< ELEMENT, SpineLineFluidInterfaceElement< ELEMENT > >::initial_element_reorder(), ScaleCoupling< M, O >::initialiseCoupledElements(), oomph::RefineablePolarTaylorHoodElement::insert_load_data(), oomph::RefineablePolarCrouzeixRaviartElement::insert_load_data(), insertCoefficient(), oomph::InterpolateFromIntegralPointsBase::integral_point_to_node_weight(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::interface_min_max(), InterfaceProblem< ELEMENT, TIMESTEPPER >::InterfaceProblem(), Eigen::SplineFitting< SplineType >::Interpolate(), DistanceWrapper< ELEMENT >::interpolate_distance_to_ext_element_to_nodes(), PSDContinuous::interpolateCSD(), oomph::BiharmonicEquations< DIM >::interpolated_dudx(), oomph::DGFaceElement::interpolated_u(), oomph::BiharmonicEquations< DIM >::interpolated_u_biharmonic(), oomph::FluxTransportEquations< DIM >::interpolated_u_flux_transport(), oomph::RefineableQElement< 2 >::interpolated_zeta_on_edge(), Eigen::SplineFitting< SplineType >::InterpolateWithDerivatives(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::interpolating_node_pt(), oomph::RefineableLinearisedQTaylorHoodElement::interpolating_node_pt(), oomph::RefineablePseudoSolidNodeUpdateElement< BASIC, SOLID >::interpolating_node_pt(), oomph::RefineableElement::interpolating_node_pt(), size_triple_t::is_cubic(), is_number_of_subsets_feasible(), oomph::QTaylorHoodElement< DIM >::is_pressure_node(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::is_pressure_node(), oomph::Orthpoly::jacobi(), oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >::jacobian_and_shape_of_field(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::jacobian_and_shape_of_field(), oomph::ElasticUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::kinematic_local_eqn(), oomph::ElasticPointFluidInterfaceBoundingElement< ELEMENT >::kinematic_local_eqn(), oomph::ElasticLineFluidInterfaceBoundingElement< ELEMENT >::kinematic_local_eqn(), oomph::ElasticUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::lagrange(), oomph::ElasticUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::lagrange_index(), oomph::SolidFiniteElement::lagrangian_position(), oomph::SolidFiniteElement::lagrangian_position_gen(), lapackNorm(), Eigen::internal::least_square_conjugate_gradient(), oomph::Orthpoly::legendre(), oomph::Orthpoly::legendre_vector(), TwoDDGProblem< ELEMENT >::limit(), oomph::MinModLimiter::limit(), oomph::BlackBoxFDNewtonSolver::line_search(), oomph::LinearisedAxisymPoroelasticBJS_FSIElement< FLUID_BULK_ELEMENT, POROELASTICITY_BULK_ELEMENT >::LinearisedAxisymPoroelasticBJS_FSIElement(), Eigen::internal::llt_rank_update_lower(), Eigen::LevenbergMarquardt< FunctorType_ >::lmder1(), Eigen::LevenbergMarquardt< FunctorType_ >::lmdif1(), Eigen::internal::lmpar(), Eigen::internal::lmpar2(), Eigen::internal::lmqrsolv(), Eigen::LevenbergMarquardt< FunctorType_ >::lmstr1(), Eigen::loadMarketDense(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::loadPacketPartial(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::loadPacketPartial(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType >::loadPacketPartial(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType, Incr >::loadPacketPartial(), SolidProblem< ELEMENT_TYPE >::loadSolidMesh(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::local_coordinate_of_node(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::local_coordinate_of_node(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::local_coordinate_of_node(), oomph::QSpectralElement< 1, NNODE_1D >::local_coordinate_of_node(), oomph::QSpectralElement< 2, NNODE_1D >::local_coordinate_of_node(), oomph::QSpectralElement< 3, NNODE_1D >::local_coordinate_of_node(), oomph::GeneralisedElement::local_eqn_number(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::local_fraction_of_node(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::local_fraction_of_node(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::local_fraction_of_node(), oomph::QSpectralElement< 1, NNODE_1D >::local_fraction_of_node(), oomph::QSpectralElement< 2, NNODE_1D >::local_fraction_of_node(), oomph::QSpectralElement< 3, NNODE_1D >::local_fraction_of_node(), RefineableBin::locate_zeta(), Eigen::numext::logical_shift_left(), Eigen::numext::logical_shift_right(), Eigen::NumTraits< type2index< n > >::lowest(), main(), main_gemm(), main_gemv(), oomph::SpineUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::make_bounding_element(), oomph::ElasticUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::make_bounding_element(), make_companion(), oomph::BoundaryNodeBase::make_nodes_periodic(), Eigen::JacobiRotation< Scalar >::makeJacobi(), BaseVTKWriter< H >::makeVTKFileWithHeader(), Eigen::internal::MappedSuperNodalMatrix< Scalar_, StorageIndex_ >::MappedSuperNodalMatrix(), Eigen::internal::matrix_function_solve_triangular_sylvester(), WallMesh< ELEMENT >::max_deformation(), max_feasible_subset_size(), oomph::ComplexMatrixBase::max_residual(), oomph::HelmholtzMGPreconditioner< DIM >::maximum_edge_width(), Eigen::DefaultDevice::memcpy(), Eigen::DefaultDevice::memcpyDeviceToHost(), Eigen::DefaultDevice::memcpyHostToDevice(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::memInit(), Eigen::DefaultDevice::memset(), MercuryCGSelfTest::MercuryCGSelfTest(), oomph::Mesh::merge_meshes(), WallMesh< ELEMENT >::min_deformation(), Eigen::LevenbergMarquardt< FunctorType_ >::minimizeInit(), Eigen::LevenbergMarquardt< FunctorType_ >::minimizeOneStep(), Eigen::LevenbergMarquardt< FunctorType_ >::minimizeOptimumStorageInit(), Eigen::LevenbergMarquardt< FunctorType_ >::minimizeOptimumStorageOneStep(), Eigen::internal::minimum_degree_ordering(), DenseLM< Scalar >::model(), sparseGaussianTest< Scalar >::model(), oomph::ElementWithMortaringStatusAtNodes< ELEMENT >::mortared_dof_index(), oomph::ElementWithMortaringStatusAtNodes< ELEMENT >::mortared_status(), CRBond_Bessel::msta2(), oomph::CRDoubleMatrix::multiply(), ThreeDimBethertonProblem< ELEMENT >::multiply_aspect_ratio(), oomph::CRDoubleMatrix::multiply_transpose(), MultiPoissonProblem< ELEMENT >::MultiPoissonProblem(), oomph::FaceElement::nbulk_value(), NByOne(), oomph::BlockPreconditioner< MATRIX >::ndof_types(), oomph::NetFluxControlElement< ELEMENT >::NetFluxControlElement(), oomph::RefineableSolidElement::ngeom_data(), oomph::FiniteElement::nodal_local_eqn(), oomph::OneDimensionalLegendreShape< NNODE_1D >::nodal_position(), oomph::FiniteElement::nodal_position(), oomph::OneDLegendreShapeParam::nodal_position(), oomph::FiniteElement::nodal_position_gen(), oomph::FiniteElement::nodal_value(), oomph::OcTree::node_number_to_vertex(), oomph::FiniteElement::node_pt(), oomph::PerturbedSpineMesh::node_pt(), oomph::AlgebraicMesh::node_pt(), oomph::Mesh::node_pt(), oomph::SolidMesh::node_pt(), oomph::SpineMesh::node_pt(), oomph::FiniteElement::node_update(), oomph::AlgebraicMesh::node_update(), oomph::MacroElementNodeUpdateMesh::node_update(), oomph::Mesh::node_update(), oomph::RefineableQSpectralElement< 3 >::nodes_built(), oomph::PRefineableElement::nodes_built(), oomph::RefineableQSpectralElement< 1 >::nodes_built(), oomph::RefineableQSpectralElement< 2 >::nodes_built(), noncopyable(), oomph::DoubleVector::norm(), oomph::DoubleMultiVector::norm(), BiharmonicTestFunctions2::normal_E(), BiharmonicTestFunctions2::normal_N(), BiharmonicTestFunctions2::normal_S(), BiharmonicTestFunctions2::normal_W(), Eigen::MatrixBase< Derived >::normalized(), oomph::VorticityRecoveryHelpers::RecoveryHelper::npartial_derivative(), oomph::VorticitySmootherElement< ELEMENT >::npartial_derivative(), Eigen::internal::nr_etdfs(), oomph::TetMeshBase::nregion_element(), nrm2(), nullary_overflow(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::oc_hang_helper(), OneDimMesh< ELEMENT >::OneDimMesh(), Eigen::type2index< n >::operator Index(), Eigen::internal::static_val< n >::operator uint64_t(), Eigen::COLAMDOrdering< StorageIndex >::operator()(), Eigen::internal::scalar_polygamma_op< Scalar >::operator()(), DenseLM< Scalar >::operator()(), sparseGaussianTest< Scalar >::operator()(), hybrj_functor::operator()(), hybrd_functor::operator()(), oomph::NonLinearElasticitySmoothMesh< ELEMENT >::operator()(), NumericalVector< T >::operator()(), SmallVector< numberOfRows >::operator()(), SmallMatrix< numberOfRows, numberOfColumns >::operator()(), operator<<(), Eigen::internal::operator<<(), oomph::DenseMatrix< T >::operator=(), Eigen::AngleAxis< Scalar_ >::operator=(), oomph::RankFiveTensor< T >::operator=(), oomph::RankFourTensor< T >::operator=(), oomph::RankThreeTensor< T >::operator=(), SmallMatrix< numberOfRows, numberOfColumns >::operator[](), NumericalVector< T >::operator[](), SmallVector< numberOfRows >::operator[](), GelfandBratuElement< NNODE_1D >::output(), PredatorPreyElement::output(), ABCElement::output(), TwoNodePoissonElement::output(), oomph::LineVisualiser::output(), oomph::TetMeshFacet::output(), oomph::TetMeshFacetedSurface::output(), DistanceWrapper< ELEMENT >::output(), oomph::SurfactantTransportInterfaceElement::output(), oomph::GeneralisedAdvectionDiffusionEquations< DIM >::output(), oomph::DiskLikeGeomObjectWithBoundaries::output_boundaries_and_triads(), oomph::FiniteElement::output_paraview(), oomph::NavierStokesEquations< DIM >::output_pressure_advection_diffusion_robin_elements(), oomph::SpaceTimeNavierStokesEquations< DIM >::output_pressure_advection_diffusion_robin_elements(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::output_pressure_advection_diffusion_robin_elements(), Global_Physical_Variables::outside_solid_boundary_traction(), QOrrSommerfeldElement< 1, NNODE_1D >::p(), oomph::TreeBasedRefineableMeshBase::p_adapt_mesh(), oomph::PolarCrouzeixRaviartElement::p_local_eqn(), oomph::PolarTaylorHoodElement::p_local_eqn(), oomph::AxisymmetricQCrouzeixRaviartElement::p_local_eqn(), oomph::AxisymmetricQTaylorHoodElement::p_local_eqn(), oomph::AxisymmetricTCrouzeixRaviartElement::p_local_eqn(), oomph::AxisymmetricTTaylorHoodElement::p_local_eqn(), oomph::TRaviartThomasDarcyElement< ORDER >::p_local_eqn(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::p_local_eqn(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::p_local_eqn(), oomph::GeneralisedNewtonianAxisymmetricTCrouzeixRaviartElement::p_local_eqn(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::p_local_eqn(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::p_local_eqn(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::p_local_eqn(), oomph::GeneralisedNewtonianTCrouzeixRaviartElement< DIM >::p_local_eqn(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::p_local_eqn(), oomph::QCrouzeixRaviartElement< DIM >::p_local_eqn(), oomph::QTaylorHoodElement< DIM >::p_local_eqn(), oomph::TCrouzeixRaviartElement< DIM >::p_local_eqn(), oomph::TTaylorHoodElement< DIM >::p_local_eqn(), oomph::TPoroelasticityElement< ORDER >::p_local_eqn(), oomph::QTaylorHoodSpaceTimeElement< DIM >::p_local_eqn(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::p_local_eqn(), oomph::QSphericalCrouzeixRaviartElement::p_local_eqn(), oomph::QSphericalTaylorHoodElement::p_local_eqn(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::p_local_eqn(), oomph::LinearisedAxisymmetricQTaylorHoodElement::p_local_eqn(), oomph::LinearisedQCrouzeixRaviartElement::p_local_eqn(), oomph::LinearisedQTaylorHoodElement::p_local_eqn(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::p_refine(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::p_refine(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::p_refine(), oomph::Tree::p_refine_if_required(), oomph::TRaviartThomasDarcyElement< ORDER >::p_value(), oomph::TPoroelasticityElement< ORDER >::p_value(), Eigen::internal::scalar_polygamma_op< Scalar >::packetOp(), ParticleBeam::ParticleBeam(), BaseCluster::particleInsertionSuccessful(), pblueNorm(), oomph::CircularPenetrator::penetration(), oomph::SurfaceContactElementBase< ELEMENT >::penetration(), HeatedCircularPenetratorElement::penetration(), CircularPenetratorElement::penetration(), Eigen::BDCSVD< MatrixType_, Options_ >::perturbCol0(), PerturbedStateProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::PerturbedStateProblem(), Eigen::internal::peven_mask(), Eigen::internal::pgather_common(), Eigen::internal::pgather_complex_size2(), Eigen::internal::pgather_partial(), Eigen::internal::pgather_partial< bfloat16, Packet8bf >(), Eigen::internal::pgather_partial< float, Packet4f >(), Eigen::internal::pgather_partial< int, Packet4i >(), Eigen::internal::pgather_partial< short int, Packet8s >(), Eigen::internal::pgather_partial< signed char, Packet16c >(), Eigen::internal::pgather_partial< std::complex< float >, Packet2cf >(), Eigen::internal::pgather_partial< unsigned char, Packet16uc >(), Eigen::internal::pgather_partial< unsigned short int, Packet8us >(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::pin_all(), FlowAroundCylinderProblem< ELEMENT >::pin_all_base_flow_dofs(), oomph::AxisymmetricTTaylorHoodElement::pin_all_nodal_pressure_dofs(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::pin_all_nodal_pressure_dofs(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::pin_all_nodal_pressure_dofs(), oomph::TTaylorHoodElement< DIM >::pin_all_nodal_pressure_dofs(), oomph::StreamfunctionProblem::pin_boundaries(), MortaringValidationProblem< ELEMENT, NON_MORTAR_ELEMENT >::pin_dofs(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::pin_dofs_of_coordinate(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableAxisymmetricQTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableGeneralisedNewtonianAxisymmetricQTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableLinearisedQTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableQTaylorHoodElement< DIM >::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineablePolarTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableQTaylorHoodSpaceTimeElement< DIM >::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableQTaylorHoodMixedOrderSpaceTimeElement< DIM >::pin_elemental_redundant_nodal_pressure_dofs(), oomph::RefineableQSphericalTaylorHoodElement::pin_elemental_redundant_nodal_pressure_dofs(), oomph::ElementWithMortaringStatusAtNodes< ELEMENT >::pin_mortared_status_of_all_nodes(), oomph::TRaviartThomasDarcyElement< ORDER >::pin_p_value(), oomph::TPoroelasticityElement< ORDER >::pin_p_value(), oomph::TPoroelasticityElement< ORDER >::pin_q_internal_value(), oomph::LinearisedQCrouzeixRaviartElement::pin_real_or_imag(), SolidProblem< ELEMENT_TYPE >::pinBoundaries(), SolidProblem< ELEMENT_TYPE >::pinBoundary(), oomph::PitchForkHandler::PitchForkHandler(), oomph::Legendre_functions_helper::plgndr1(), Eigen::internal::pload_partial(), Eigen::internal::pload_partial< Packet16c >(), Eigen::internal::pload_partial< Packet16uc >(), Eigen::internal::pload_partial< Packet2cf >(), Eigen::internal::pload_partial< Packet4f >(), Eigen::internal::pload_partial< Packet4i >(), Eigen::internal::pload_partial< Packet8bf >(), Eigen::internal::pload_partial< Packet8s >(), Eigen::internal::pload_partial< Packet8us >(), Eigen::internal::pload_partial_common(), Eigen::internal::ploadt_partial(), Eigen::internal::ploadu_partial(), Eigen::internal::ploadu_partial< Packet16c >(), Eigen::internal::ploadu_partial< Packet16uc >(), Eigen::internal::ploadu_partial< Packet2cf >(), Eigen::internal::ploadu_partial< Packet4f >(), Eigen::internal::ploadu_partial< Packet4i >(), Eigen::internal::ploadu_partial< Packet8bf >(), Eigen::internal::ploadu_partial< Packet8s >(), Eigen::internal::ploadu_partial< Packet8us >(), Eigen::internal::ploadu_partial_common(), oomph::PMLCornerQuadMesh< ELEMENT >::PMLCornerQuadMesh(), oomph::PMLQuadMesh< ELEMENT >::PMLQuadMesh(), oomph::FiniteElement::point_output(), PoissonProblem< ELEMENT >::PoissonProblem(), Eigen::polygamma(), Eigen::RunQueue< Work, kSize >::PopBackHalf(), oomph::SolidFiniteElement::position_local_eqn(), rapidjson::internal::Pow10(), Eigen::internal::ppolygamma(), oomph::StorableShapeElementBase::pre_compute_d2shape_local_at_knots(), oomph::StorableShapeElementBase::pre_compute_dshape_local_at_knots(), oomph::InterpolateFromIntegralPointsBase::pre_compute_ipt_to_node_mapping(), oomph::StorableShapeElementBase::pre_compute_shape_at_knots(), Eigen::internal::predux_helper(), PRefineableOneDPoissonProblem< ELEMENT >::PRefineableOneDPoissonProblem(), SolidProblem< ELEMENT_TYPE >::prepareForSolve(), ExactSolution::prescribed_flux_for_unsteady_heat_validation(), ExactSolnForUnsteadyHeat::prescribed_flux_on_fixed_y_boundary(), TanhSolnForLinearWave::prescribed_flux_on_fixed_y_boundary(), Global_Parameters::pressure_load(), PressureWaveFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::PressureWaveFSIProblem(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::processDataLineBluestein(), product_sweep(), Eigen::internal::OP< MatrixSolver, MatrixType, Scalar, true >::project(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::project(), Eigen::SparseVector< Scalar_, Options_, StorageIndex_ >::prune(), oomph::Mesh::prune_dead_nodes(), Eigen::internal::pscatter_common(), Eigen::internal::pscatter_complex_size2(), Eigen::internal::pscatter_partial(), Eigen::internal::pscatter_partial< bfloat16, Packet8bf >(), Eigen::internal::pscatter_partial< float, Packet4f >(), Eigen::internal::pscatter_partial< int, Packet4i >(), Eigen::internal::pscatter_partial< short int, Packet8s >(), Eigen::internal::pscatter_partial< signed char, Packet16c >(), Eigen::internal::pscatter_partial< std::complex< float >, Packet2cf >(), Eigen::internal::pscatter_partial< unsigned char, Packet16uc >(), Eigen::internal::pscatter_partial< unsigned short int, Packet8us >(), Eigen::EigenSolver< MatrixType_ >::pseudoEigenvalueMatrix(), PseudoSolidCapProblem< ELEMENT >::PseudoSolidCapProblem(), Eigen::internal::pstore_partial(), Eigen::internal::pstore_partial< bfloat16 >(), Eigen::internal::pstore_partial< float >(), Eigen::internal::pstore_partial< int >(), Eigen::internal::pstore_partial< short int >(), Eigen::internal::pstore_partial< signed char >(), Eigen::internal::pstore_partial< std::complex< float > >(), Eigen::internal::pstore_partial< unsigned char >(), Eigen::internal::pstore_partial< unsigned short int >(), Eigen::internal::pstore_partial_common(), Eigen::internal::pstoret_partial(), Eigen::internal::pstoreu_partial(), Eigen::internal::pstoreu_partial< bfloat16 >(), Eigen::internal::pstoreu_partial< float >(), Eigen::internal::pstoreu_partial< int >(), Eigen::internal::pstoreu_partial< short int >(), Eigen::internal::pstoreu_partial< signed char >(), Eigen::internal::pstoreu_partial< std::complex< float > >(), Eigen::internal::pstoreu_partial< unsigned char >(), Eigen::internal::pstoreu_partial< unsigned short int >(), Eigen::internal::pstoreu_partial_common(), Eigen::internal::ptranspose(), Eigen::internal::detail::ptranspose_impl(), rapidjson::GenericWriteStream::PutN(), rapidjson::PutN(), oomph::TRaviartThomasDarcyElement< ORDER >::q_edge(), oomph::TPoroelasticityElement< ORDER >::q_edge(), oomph::TRaviartThomasDarcyElement< ORDER >::q_edge_index(), oomph::TPoroelasticityElement< ORDER >::q_edge_index(), oomph::TRaviartThomasDarcyElement< ORDER >::q_edge_local_eqn(), oomph::TPoroelasticityElement< ORDER >::q_edge_local_eqn(), oomph::TRaviartThomasDarcyElement< ORDER >::q_edge_node_number(), oomph::TPoroelasticityElement< ORDER >::q_edge_node_number(), oomph::TPoroelasticityElement< ORDER >::q_internal(), oomph::TRaviartThomasDarcyElement< ORDER >::q_internal_local_eqn(), oomph::TPoroelasticityElement< ORDER >::q_internal_local_eqn(), QFaceTestProblem< ELEMENT >::QFaceTestProblem(), Eigen::internal::qrsolv(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::quad_hang_helper(), Eigen::internal::QuickSplit(), Eigen::internal::r1mpyq(), Eigen::internal::r1updt(), Eigen::randomPermutationVector(), oomph::RankFiveTensor< T >::RankFiveTensor(), oomph::RankFourTensor< T >::RankFourTensor(), oomph::RankThreeTensor< T >::RankThreeTensor(), oomph::FiniteElement::raw_dnodal_position_dt(), oomph::FiniteElement::raw_dnodal_position_gen_dt(), oomph::SolidFiniteElement::raw_lagrangian_position(), oomph::SolidFiniteElement::raw_lagrangian_position_gen(), oomph::FiniteElement::raw_nodal_position(), oomph::FiniteElement::raw_nodal_position_gen(), oomph::FiniteElement::raw_nodal_value(), Eigen::internal::rcond_invmatrix_L1_norm_estimate(), oomph::Mesh::read(), ConstantMassFlowMaserBoundary::read(), DropletBoundary::read(), InsertionBoundary::read(), SubcriticalMaserBoundary::read(), HorizontalScrew::read(), IntersectionOfWalls::read(), Membrane::read(), helpers::readArrayFromFile(), WallHandler::readTriangleWall(), oomph::PRefineableQElement< 1, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::PRefineableQElement< 2, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::rebuild_from_sons(), oomph::RefineableQSpectralElement< 1 >::rebuild_from_sons(), oomph::RectangleWithHoleAndAnnularRegionMesh< ELEMENT >::RectangleWithHoleAndAnnularRegionMesh(), RectangleWithHoleMesh< ELEMENT >::RectangleWithHoleMesh(), oomph::RectangleWithHoleMesh< ELEMENT >::RectangleWithHoleMesh(), RefineableFishPoissonProblem< ELEMENT >::RefineableFishPoissonProblem(), RefineableOneDAdvectionDiffusionReactionProblem< ELEMENT >::RefineableOneDAdvectionDiffusionReactionProblem(), RefineableOneDPoissonProblem< ELEMENT >::RefineableOneDPoissonProblem(), RefineablePeriodicLoadProblem< ELEMENT >::RefineablePeriodicLoadProblem(), oomph::RefineableTetgenMesh< ELEMENT >::RefineableTetgenMesh(), RefineableTwoMeshFluxPoissonProblem< ELEMENT >::RefineableTwoMeshFluxPoissonProblem(), RefineableUnsteadyHeatProblem< ELEMENT >::RefineableUnsteadyHeatProblem(), RefineableYoungLaplaceProblem< ELEMENT >::RefineableYoungLaplaceProblem(), oomph::TetMeshBase::region_element_pt(), Eigen::internal::SparseLUImpl< Scalar, StorageIndex >::relax_snode(), oomph::Mesh::remove_boundary_nodes(), oomph::LinearisedAxisymmetricQCrouzeixRaviartElement::required_nvalue(), oomph::LinearisedAxisymmetricQTaylorHoodElement::required_nvalue(), SSPorousChannelElement::required_nvalue(), QOrrSommerfeldElement< 1, NNODE_1D >::required_nvalue(), oomph::TLinearHeatAndElasticityElement< DIM, NNODE_1D >::required_nvalue(), QHarmonicElement< NNODE_1D >::required_nvalue(), RefineableBuoyantQCrouzeixRaviartElement< DIM >::required_nvalue(), RefineableQCrouzeixRaviartElementWithExternalElement< DIM >::required_nvalue(), RefineableQAdvectionDiffusionElementWithExternalElement< DIM >::required_nvalue(), oomph::RefineableBuoyantQAxisymCrouzeixRaviartElement::required_nvalue(), oomph::AxisymmetricQAdvectionCrouzeixRaviartElement::required_nvalue(), oomph::RefineableBuoyantQSphericalCrouzeixRaviartElement::required_nvalue(), NonIsothermalAxisymmetricQCrouzeixRaviartElement::required_nvalue(), QThermalPVDElement< DIM >::required_nvalue(), oomph::AxisymmetricQCrouzeixRaviartElement::required_nvalue(), oomph::AxisymmetricQTaylorHoodElement::required_nvalue(), oomph::AxisymmetricTTaylorHoodElement::required_nvalue(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::required_nvalue(), oomph::ProjectableDarcyElement< DARCY_ELEMENT >::required_nvalue(), oomph::TRaviartThomasDarcyElement< ORDER >::required_nvalue(), oomph::GeneralisedNewtonianAxisymmetricQCrouzeixRaviartElement::required_nvalue(), oomph::GeneralisedNewtonianAxisymmetricQTaylorHoodElement::required_nvalue(), oomph::GeneralisedNewtonianAxisymmetricTTaylorHoodElement::required_nvalue(), oomph::GeneralisedNewtonianQCrouzeixRaviartElement< DIM >::required_nvalue(), oomph::GeneralisedNewtonianQTaylorHoodElement< DIM >::required_nvalue(), oomph::GeneralisedNewtonianTTaylorHoodElement< DIM >::required_nvalue(), oomph::PseudoSolidNodeUpdateElement< BASIC, SOLID >::required_nvalue(), oomph::RefineablePseudoSolidNodeUpdateElement< BASIC, SOLID >::required_nvalue(), oomph::QLinearWaveElement< DIM, NNODE_1D >::required_nvalue(), oomph::LinearisedQCrouzeixRaviartElement::required_nvalue(), oomph::LinearisedQTaylorHoodElement::required_nvalue(), oomph::BuoyantQCrouzeixRaviartElement< DIM >::required_nvalue(), oomph::RefineableBuoyantQCrouzeixRaviartElement< DIM >::required_nvalue(), oomph::QCrouzeixRaviartElement< DIM >::required_nvalue(), oomph::QTaylorHoodElement< DIM >::required_nvalue(), oomph::TTaylorHoodElement< DIM >::required_nvalue(), oomph::PolarCrouzeixRaviartElement::required_nvalue(), oomph::PolarTaylorHoodElement::required_nvalue(), oomph::TPoroelasticityElement< ORDER >::required_nvalue(), oomph::QPVDElementWithContinuousPressure< DIM >::required_nvalue(), oomph::TPVDElementWithContinuousPressure< DIM >::required_nvalue(), oomph::QTaylorHoodSpaceTimeElement< DIM >::required_nvalue(), oomph::QTaylorHoodMixedOrderSpaceTimeElement< DIM >::required_nvalue(), oomph::QSphericalTaylorHoodElement::required_nvalue(), oomph::QYoungLaplaceElement< NNODE_1D >::required_nvalue(), oomph::ElementWithMortaringStatusAtNodes< ELEMENT >::required_nvalue(), CylinderMesh< ELEMENT >::rescale_length(), VTKData::reserveCells(), VTKData::reservePoints(), oomph::CumulativeTimings::reset(), oomph::Timer::reset(), GlobalFct::reset(), oomph::SolidICProblem::reset_original_state(), oomph::VectorMatrix< VALUE_TYPE >::resize(), oomph::DenseMatrix< T >::resize(), oomph::RankThreeTensor< T >::resize(), oomph::RankFourTensor< T >::resize(), oomph::RankFiveTensor< T >::resize(), Eigen::MaxSizeVector< T >::resize(), oomph::AugmentedBlockFoldLinearSolver::resolve(), oomph::BlockPitchForkLinearSolver::resolve(), oomph::AugmentedBlockPitchForkLinearSolver::resolve(), oomph::Problem::restore_dof_values(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::restore_positions(), oomph::BlockPreconditioner< MATRIX >::return_block_vector(), oomph::CircularPenetrator::rigid_body_displacement(), HeatedCircularPenetratorElement::rigid_body_displacement(), Eigen::TensorEvaluator< const TensorRollOp< RollDimensions, ArgType >, Device >::roll(), rot(), oomph::Rotateable< ELEMENT >::rotate(), Rotateable< ELEMENT >::rotate(), RotatingCylinderProblem< ELEMENT, TIMESTEPPER >::RotatingCylinderProblem(), RotatingProblem< ELEMENT >::RotatingProblem(), Round(), helpers::round(), casting_test< SrcScalar, TgtScalar >::run(), Eigen::internal::pardiso_run_selector< IndexType >::run(), Eigen::internal::pardiso_run_selector< long long int >::run(), Eigen::internal::tensor_index_linearization_helper< Index, NumIndices, n, RowMajor >::run(), Eigen::internal::fixed_size_tensor_index_linearization_helper< Index, NumIndices, n, RowMajor >::run(), Eigen::internal::tensor_vsize_index_linearization_helper< Index, NumIndices, n, RowMajor >::run(), Eigen::internal::fixed_size_tensor_index_extraction_helper< Index, n >::run(), Eigen::internal::sparse_time_dense_product_impl< SparseLhsType, DenseRhsType, DenseResType, typename DenseResType::Scalar, RowMajor, true >::run(), Eigen::internal::sparse_time_dense_product_impl< SparseLhsType, DenseRhsType, DenseResType, typename DenseResType::Scalar, RowMajor, false >::run(), evaluate_defaults_action_t::run(), Eigen::internal::permutation_matrix_product< ExpressionType, Side, Transposed, DenseShape >::run(), Eigen::internal::lapacke_helpers::lapacke_hqr< MatrixQR, HCoeffs >::run(), loadColData_impl< RhsMapper, linear >::run(), Eigen::internal::svd_precondition_2x2_block_to_be_real< MatrixType, Options, true >::run(), run_and_compare_to_gpu(), run_matrix_tests(), run_on_cpu(), run_on_gpu(), run_on_gpu_meta_kernel(), run_prescribed_flux(), run_prescribed_pressure_gradient(), run_vector_tests(), rvalue_copyassign(), Eigen::internal::rwupdt(), oomph::PolarStreamfunctionTractionElement< ELEMENT >::s_local_eqn(), Eigen::internal::arpack_wrapper< double, double >::saupd(), Eigen::internal::arpack_wrapper< float, float >::saupd(), saveAsBitmap(), SolidProblem< ELEMENT_TYPE >::saveSolidMesh(), oomph::YoungLaplaceEquations::scalar_product(), oomph::YoungLaplaceEquations::scalar_times_vector(), Eigen::TensorEvaluator< const TensorFFTOp< FFT, ArgType, FFTResultType, FFTDir >, Device >::scramble_FFT(), Screw::Screw(), sdot(), oomph::SecondInvariantHelper::second_invariant(), oomph::AlgebraicMesh::self_test(), Eigen::type2index< n >::set(), BaseStateProblem< BASE_ELEMENT >::set_boundary_conditions(), PerturbedStateProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::set_boundary_conditions(), RotatingProblem< ELEMENT >::set_boundary_conditions(), RotatingCylinderProblem< ELEMENT, TIMESTEPPER >::set_boundary_conditions(), InterfaceProblem< ELEMENT, TIMESTEPPER >::set_boundary_conditions(), FlowAroundCylinderProblem< ELEMENT >::set_boundary_conditions(), RefineableRotatingCylinderProblem< ELEMENT >::set_boundary_conditions(), TorusProblem< ELEMENT >::set_boundary_conditions(), UnstructuredTorusProblem< ELEMENT >::set_boundary_conditions(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::set_boundary_conditions(), AxiPoroProblem< ELEMENT, TIMESTEPPER >::set_boundary_values(), oomph::Mesh::set_consistent_pinned_values_for_continuation(), oomph::BiharmonicProblem< DIM >::set_dirichlet_boundary_condition(), FSIRingProblem::set_fluid_initial_condition(), oomph::Node::set_hanging_pt(), RefineableAdvectionDiffusionPipeProblem< ELEMENT >::set_initial_condition(), BaseStateProblem< BASE_ELEMENT >::set_initial_condition(), PerturbedStateProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::set_initial_condition(), InterfaceProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), RotatingCylinderProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), TorusProblem< ELEMENT >::set_initial_condition(), UnstructuredTorusProblem< ELEMENT >::set_initial_condition(), AxiPoroProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), UnsteadyHeatProblem< ELEMENT >::set_initial_condition(), FSICollapsibleChannelProblem< ELEMENT >::set_initial_condition(), FSIDrivenCavityProblem< ELEMENT >::set_initial_condition(), CollapsibleChannelProblem< ELEMENT >::set_initial_condition(), RayleighProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), RayleighTractionProblem< ELEMENT, TIMESTEPPER >::set_initial_condition(), TwoLayerInterfaceProblem< ELEMENT >::set_initial_condition(), RefineableOneDAdvectionDiffusionReactionProblem< ELEMENT >::set_initial_condition(), RefineableActivatorInhibitorProblem< ELEMENT >::set_initial_condition(), RefineableSphericalSpinUpProblem< ELEMENT >::set_initial_condition(), AdvectionProblem::set_initial_conditions(), EulerProblem::set_initial_conditions(), RefineableAdvectionDiffusionPipeProblem< ELEMENT >::set_inlet_concentration(), oomph::SolidMesh::set_lagrangian_nodal_coordinates(), oomph::ElementWithMortaringStatusAtNodes< ELEMENT >::set_mortared(), oomph::FiniteElement::set_n_node(), oomph::SolidICProblem::set_newmark_initial_condition_consistently(), oomph::SolidICProblem::set_newmark_initial_condition_directly(), oomph::BlockPreconditioner< MATRIX >::set_nmesh(), oomph::Mesh::set_nodal_time_stepper(), oomph::ElementWithMortaringStatusAtNodes< ELEMENT >::set_not_mortared(), oomph::TRaviartThomasDarcyElement< ORDER >::set_p_value(), oomph::SurfaceContactElementBase< ELEMENT >::set_penetrator_pt(), oomph::Problem::set_pinned_values_to_zero(), SolidFreeSurfaceRotationProblem< ELEMENT >::set_positions_from_lagrangian_coordinates(), oomph::PeriodicOrbitAssemblyHandler< NNODE_1D >::set_previous_dofs_to_current_dofs(), oomph::TRaviartThomasDarcyElement< ORDER >::set_q_edge(), StabilityProblem< BASE_ELEMENT, PERTURBED_ELEMENT >::set_up_periodic_base_flow(), oomph::VolumeConstraintBoundingElement::set_volume_constraint_element(), DPMBase::setFixedParticles(), Eigen::PermutationBase< Derived >::setIdentity(), Eigen::internal::MappedSuperNodalMatrix< Scalar_, StorageIndex_ >::setInfos(), StatisticsVector< T >::setN(), BaseCG::setN(), VolumeCoupling::setNodalWeightByDistance(), VolumeCoupling::setNodalWeightOnCubicMesh(), PacketBlockSet< Scalar, StorageOrder, n >::setPacketBlock(), IntersectionOfWalls::setPointsAndLines(), Calibration::setPSD(), Material::setPSD(), setrand_eigen_sumeq(), LevelSetWall::setShapeFourSided(), oomph::AlgebraicRefineableQuarterTubeMesh< ELEMENT >::setup_algebraic_node_update(), SimpleShearProblem< ELEMENT >::setup_boundary_conditions(), oomph::TetMeshBase::setup_boundary_coordinates(), oomph::XdaTetMesh< ELEMENT >::setup_boundary_coordinates(), oomph::BrickMeshBase::setup_boundary_element_info(), oomph::LineMeshBase::setup_boundary_element_info(), oomph::Problem::setup_element_count_per_dof(), oomph::FluidInterfaceAdditionalValues< SolubleSurfactantTransportInterfaceElement >::setup_equation_indices(), oomph::FluidInterfaceAdditionalValues< SurfactantTransportInterfaceElement >::setup_equation_indices(), oomph::RefineableQElement< 3 >::setup_father_bounds(), oomph::RefineableQElement< 1 >::setup_father_bounds(), oomph::RefineableQElement< 2 >::setup_father_bounds(), oomph::LineVisualiser::setup_from_file(), oomph::DGFaceElement::setup_neighbour_info(), oomph::RefineableBrickMesh< ELEMENT >::setup_octree_forest(), oomph::VorticitySmoother< ELEMENT >::setup_patches(), oomph::Z2ErrorEstimator::setup_patches(), oomph::SolidICProblem::setup_problem(), oomph::RefineableQuadMesh< ELEMENT >::setup_quadtree_forest(), ClosedCSCWalls::setupInitialConditions(), CSCInit::setupInitialConditions(), CSCWalls::setupInitialConditions(), CFDDEMCoupleTest::setupInitialConditions(), Chain::setupInitialConditions(), ParticleCreation::setupInitialConditions(), TriangulatedScrewSelfTest::setupInitialConditions(), Packing::setupInitialConditions(), ScaleCoupledBeam::setupMercury(), CoupledProblem::setupOomph(), Eigen::internal::arpack_wrapper< double, double >::seupd(), Eigen::internal::arpack_wrapper< float, float >::seupd(), oomph::ClampedHermiteShellBoundaryConditionElement::shape(), SheetGlueProblem< ELEMENT >::SheetGlueProblem(), ShellMesh< ELEMENT >::ShellMesh(), oomph::Mesh::shift_time_values(), Eigen::internal::shuffle(), Eigen::internal::shuffle2(), Eigen::internal::shuffle2< true >(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::sign_edge(), oomph::TRaviartThomasDarcyElement< ORDER >::sign_edge(), oomph::TPoroelasticityElement< ORDER >::sign_edge(), SimpleRefineableRectangularQuadMesh< ELEMENT >::SimpleRefineableRectangularQuadMesh(), size_triple_t::size_triple_t(), oomph::SlopingQuadMesh< ELEMENT >::SlopingQuadMesh(), oomph::RefineableTetgenMesh< ELEMENT >::snap_nodes_onto_boundary(), oomph::TetMeshBase::snap_nodes_onto_geometric_objects(), oomph::UnstructuredTwoDMeshGeometryBase::snap_nodes_onto_geometric_objects(), FallingBlockProblem< ELEMENT >::snap_onto_sphere(), RisingBubbleProblem< ELEMENT >::snap_onto_sphere(), oomph::AxisymmetricPoroelasticityEquations::solid_body_force(), SolidBag::SolidBag(), SolidFreeSurfaceRotationProblem< ELEMENT >::SolidFreeSurfaceRotationProblem(), oomph::SolidMesh::SolidMesh(), ABCProblem< ELEMENT, TIMESTEPPERT >::solve(), RefineableRotatingCylinderProblem< ELEMENT >::solve(), oomph::AugmentedBlockFoldLinearSolver::solve(), oomph::BlockPitchForkLinearSolver::solve(), oomph::AugmentedBlockPitchForkLinearSolver::solve(), oomph::BlockHopfLinearSolver::solve(), SmallMatrix< numberOfRows, numberOfColumns >::solve(), oomph::HopfHandler::solve_complex_system(), oomph::ARPACK::solve_eigenproblem(), oomph::LAPACK_QZ::solve_eigenproblem(), oomph::ANASAZI::solve_eigenproblem(), oomph::BlockHopfLinearSolver::solve_for_two_rhs(), oomph::FoldHandler::solve_full_system(), oomph::PitchForkHandler::solve_full_system(), oomph::HopfHandler::solve_full_system(), InclinedPlaneProblem< ELEMENT, INTERFACE_ELEMENT >::solve_steady(), TorusProblem< ELEMENT >::solve_system(), Eigen::HybridNonLinearSolver< FunctorType, Scalar >::solveInit(), Eigen::internal::MappedSuperNodalMatrix< Scalar_, StorageIndex_ >::solveInPlace(), BaseCoupling< M, O >::solveMercury(), Eigen::HybridNonLinearSolver< FunctorType, Scalar >::solveNumericalDiffInit(), Eigen::HybridNonLinearSolver< FunctorType, Scalar >::solveNumericalDiffOneStep(), Eigen::HybridNonLinearSolver< FunctorType, Scalar >::solveOneStep(), Eigen::internal::MappedSuperNodalMatrix< Scalar_, StorageIndex_ >::solveTransposedInPlace(), Eigen::ComplexEigenSolver< MatrixType_ >::sortEigenvalues(), oomph::DarcyEquations< DIM >::source(), CGCoordinates::spaceEvenly(), sparse_block(), oomph::CRDoubleMatrix::sparse_indexed_output_with_offset(), sparse_product(), special_numbers(), sphericalHarmonics::sphericalHarmonics(), SphericalSpinUpProblem< ELEMENT >::SphericalSpinUpProblem(), oomph::SpineElement< ELEMENT >::spine_local_eqn(), oomph::PerturbedSpineElement< ELEMENT >::spine_local_eqn(), SpineGravityTractionElement< ELEMENT >::SpineGravityTractionElement(), oomph::Tree::split_if_required(), DPMBase::splitDomain(), Eigen::internal::stable_norm_impl(), Eigen::internal::stable_norm_impl_inner_step(), Eigen::MatrixBase< Derived >::stableNormalized(), Eigen::internal::static_val< n >::static_val(), StefanBoltzmannProblem< ELEMENT >::StefanBoltzmannProblem(), Eigen::internal::stem_function_cos(), Eigen::internal::stem_function_cosh(), Eigen::internal::stem_function_sin(), Eigen::internal::stem_function_sinh(), oomph::Problem::store_current_dof_values(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::store_positions(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::storePacketBlock(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::storePacketBlock(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType >::storePacketPartial(), Eigen::internal::BlasLinearMapper< Scalar, Index, AlignmentType, Incr >::storePacketPartial(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, 1 >::storePacketPartial(), Eigen::internal::blas_data_mapper< Scalar, Index, StorageOrder, AlignmentType, Incr >::storePacketPartial(), oomph::Refineable_r_mesh< ELEMENT >::stretch_mesh(), Eigen::BDCSVD< MatrixType_, Options_ >::structured_update(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::SurfactantProblem(), svd_check_max_size_matrix(), svd_fill_random(), RefineablePorousChannelProblem< ELEMENT >::symmetrise_eigenfunction_for_adaptive_pitchfork_tracking(), Packing::test(), test_argmax_dim(), test_argmin_dim(), test_compute_block_size(), test_fft_non_power_of_2_round_trip(), test_index_pairs_dim(), test_linear_but_not_vectorizable(), test_mixing_types(), test_nnls_returns_NoConvergence_when_maxIterations_is_too_low(), test_nnls_special_case_solves_in_n_iterations(), test_nnls_special_case_solves_in_zero_iterations(), test_notification_multiple(), test_notification_single(), test_parallelize_gemm(), test_simple_index_pairs(), test_sycl_argmax_dim(), test_sycl_argmin_dim(), test_tensor_randacc(), testChkder(), testHybrd(), testHybrd1(), testHybrj(), testHybrj1(), testLmder(), testLmder1(), testLmdif(), testLmdif1(), testLmstr(), testLmstr1(), testNistBennett5(), testNistBoxBOD(), testNistChwirut2(), testNistEckerle4(), testNistHahn1(), testNistLanczos1(), testNistMGH09(), testNistMGH10(), testNistMGH17(), testNistMisra1a(), testNistMisra1d(), testNistRat42(), testNistRat43(), testNistThurber(), testVectorType(), oomph::TetgenMesh< ELEMENT >::TetgenMesh(), TetmeshPoissonProblem< ELEMENT >::TetmeshPoissonProblem(), TFaceTestProblem< ELEMENT >::TFaceTestProblem(), ThermalProblem< ELEMENT >::ThermalProblem(), oomph::ThinLayerBrickOnTetMesh< ELEMENT >::ThinLayerBrickOnTetMesh(), ThreeDimBethertonProblem< ELEMENT >::ThreeDimBethertonProblem(), ActivatorInhibitorProblem< ELEMENT >::timestep(), SSP_RungeKutta< ORDER >::timestep(), oomph::LowStorageRungeKutta< ORDER >::timestep(), TorusProblem< ELEMENT >::TorusProblem(), helpers::toString(), oomph::TemplateFreeContactElementBase::traction_fct(), LocalExpansion::translateLocalExpansion(), Multipole::TranslateMultipoleExpansionTo(), Eigen::internal::treePostorder(), TriangleFaceTestProblem< ELEMENT >::TriangleFaceTestProblem(), Eigen::internal::tridiagonal_qr_step(), Eigen::internal::tridiagonalization_inplace(), oomph::YoungLaplaceEquations::two_norm(), TwoDDGMesh< ELEMENT >::TwoDDGMesh(), TwoDDGProblem< ELEMENT >::TwoDDGProblem(), TwoMeshFluxAdvectionDiffusionProblem< ELEMENT >::TwoMeshFluxAdvectionDiffusionProblem(), TwoMeshFluxPoissonProblem< ELEMENT >::TwoMeshFluxPoissonProblem(), TwoNodePoissonElement::u(), ComplexHarmonicEquations::u(), HarmonicEquations::u(), ModalPRefineableQPoissonElement< DIM >::u(), oomph::YoungLaplaceEquations::u(), oomph::LinearisedAxisymmetricFluidInterfaceElement::u(), QOrrSommerfeldElement< 1, NNODE_1D >::u(), oomph::TPoroelasticityElement< ORDER >::u_index(), HarmonicEquations::u_local_eqn(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::u_local_eqn(), oomph::YoungLaplaceEquations::u_local_eqn(), ComplexHarmonicEquations::u_local_eqn(), oomph::NavierStokesTractionElement< ELEMENT >::u_local_eqn(), oomph::PolarNavierStokesTractionElement< ELEMENT >::u_local_eqn(), oomph::PolarStressIntegralElement< ELEMENT >::u_local_eqn(), oomph::NavierStokesSpaceTimeTractionElement< ELEMENT >::u_local_eqn(), oomph::NavierStokesMixedOrderSpaceTimeTractionElement< ELEMENT >::u_local_eqn(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::u_local_eqn(), oomph::GeneralisedNewtonianNavierStokesEquations< DIM >::u_nst(), oomph::NavierStokesEquations< DIM >::u_nst(), oomph::SpaceTimeNavierStokesEquations< DIM >::u_nst(), oomph::SpaceTimeNavierStokesMixedOrderEquations< DIM >::u_nst(), oomph::PolarCrouzeixRaviartElement::u_pnst(), oomph::PolarTaylorHoodElement::u_pnst(), oomph::SphericalNavierStokesEquations::u_spherical_nst(), Eigen::umeyama(), unaligned_objects(), oomph::RefineableElement::unbuild(), NurbsSurface::unclampKnots(), UnitCubePoissonMGProblem< ELEMENT, MESH >::UnitCubePoissonMGProblem(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::unpin_all(), FlowAroundCylinderProblem< ELEMENT >::unpin_all_base_flow_dofs(), UnsteadyHeatProblem< ELEMENT >::unpin_all_dofs(), oomph::ProjectionProblem< PROJECTABLE_ELEMENT >::unpin_dofs_of_coordinate(), oomph::RefineableLinearisedAxisymmetricQTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::RefineableAxisymmetricQTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::RefineableGeneralisedNewtonianAxisymmetricQTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::RefineableGeneralisedNewtonianQTaylorHoodElement< DIM >::unpin_elemental_pressure_dofs(), oomph::RefineableLinearisedQTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::RefineableQTaylorHoodElement< DIM >::unpin_elemental_pressure_dofs(), oomph::RefineablePolarTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::RefineableQTaylorHoodSpaceTimeElement< DIM >::unpin_elemental_pressure_dofs(), oomph::RefineableQTaylorHoodMixedOrderSpaceTimeElement< DIM >::unpin_elemental_pressure_dofs(), oomph::RefineableQSphericalTaylorHoodElement::unpin_elemental_pressure_dofs(), oomph::RefineableQPVDElementWithContinuousPressure< DIM >::unpin_elemental_solid_pressure_dofs(), oomph::QPVDElementWithContinuousPressure< DIM >::unpin_elemental_solid_pressure_dofs(), oomph::TPVDElementWithContinuousPressure< DIM >::unpin_elemental_solid_pressure_dofs(), oomph::LinearisedQCrouzeixRaviartElement::unpin_real_or_imag(), ConvectionProblem< NST_ELEMENT, AD_ELEMENT >::unpin_surface(), SurfactantProblem< ELEMENT, INTERFACE_ELEMENT >::unpin_surface(), ElasticInterfaceProblem< ELEMENT, TIMESTEPPER >::unsteady_run(), UnsteadyHeatProblem< ELEMENT >::UnsteadyHeatProblem(), UnstructuredFSIProblem< FLUID_ELEMENT, SOLID_ELEMENT >::UnstructuredFSIProblem(), UnstructuredTorusProblem< ELEMENT >::UnstructuredTorusProblem(), oomph::RefineableTetgenMesh< ELEMENT >::update_faceted_surface_using_face_mesh(), ScaleCoupling< M, O >::updateCoupledElements(), SCoupling< M, O >::updateDPMWallsFromFiniteElems(), Eigen::internal::useSpecificBlockingSizes(), uuatoi(), Global_Physical_Variables::validation_solid_fsi_boundary_traction(), oomph::YoungLaplaceEquations::vector_sum(), verify_is_approx_upto_permutation(), oomph::OcTree::vertex_node_to_vector(), VibratingShellProblem< ELEMENT >::VibratingShellProblem(), ComplexHarmonicEquations::w(), WallMesh< ELEMENT >::WallMesh(), oomph::TwoDAnnularMesh< ELEMENT >::wrap_into_annular_shape(), HorizontalScrew::write(), oomph::GmshTetScaffoldMesh::write_geo_file(), CFile::writeP4C(), CFile::writeP4W(), DataFiles::writeTimeStep(), LevelSetWall::writeToFile(), SolidProblem< ELEMENT_TYPE >::writeToVTK(), YoungLaplaceProblem< ELEMENT >::YoungLaplaceProblem(), oomph::UnsteadyHeatBaseFaceElement< ELEMENT >::zeta_nodal(), oomph::SurfaceMeltElement< ELEMENT >::zeta_nodal(), oomph::HeatedLinearSurfaceContactElement< ELEMENT >::zeta_nodal(), oomph::HeatedPenetratorFluxElement< ELEMENT >::zeta_nodal(), StefanBoltzmannMeltElement< ELEMENT >::zeta_nodal(), oomph::StefanBoltzmannUnsteadyHeatFluxElement< ELEMENT >::zeta_nodal(), oomph::UnsteadyHeatFluxPseudoMeltElement< ELEMENT >::zeta_nodal(), oomph::AdvectionDiffusionFluxElement< ELEMENT >::zeta_nodal(), oomph::AxisymmetricLinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::AxisymmetricNavierStokesTractionElement< ELEMENT >::zeta_nodal(), oomph::AxisymmetricPoroelasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::BiharmonicFluxElement< DIM >::zeta_nodal(), oomph::DarcyFaceElement< ELEMENT >::zeta_nodal(), oomph::ElasticLineVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::SpineLineVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::ElasticAxisymmetricVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::SpineAxisymmetricVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::ElasticSurfaceVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::SpineSurfaceVolumeConstraintBoundingElement< ELEMENT >::zeta_nodal(), oomph::ElasticUpdateFluidInterfaceElement< EQUATION_CLASS, DERIVATIVE_CLASS, ELEMENT >::zeta_nodal(), oomph::ElasticPointFluidInterfaceBoundingElement< ELEMENT >::zeta_nodal(), oomph::ElasticLineFluidInterfaceBoundingElement< ELEMENT >::zeta_nodal(), oomph::DGEulerFaceElement< ELEMENT >::zeta_nodal(), oomph::DGEulerFaceReflectionElement< ELEMENT >::zeta_nodal(), oomph::FourierDecomposedHelmholtzBCElementBase< ELEMENT >::zeta_nodal(), oomph::FiniteElement::zeta_nodal(), oomph::SolidFiniteElement::zeta_nodal(), oomph::SolidFaceElement::zeta_nodal(), oomph::DummyFaceElement< ELEMENT >::zeta_nodal(), oomph::FreeStandingFaceElement< ELEMENT >::zeta_nodal(), oomph::FaceElementAsGeomObject< ELEMENT >::zeta_nodal(), oomph::ProjectableElement< ELEMENT >::zeta_nodal(), oomph::HelmholtzBCElementBase< ELEMENT >::zeta_nodal(), oomph::HelmholtzFluxElement< ELEMENT >::zeta_nodal(), oomph::LinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::LinearWaveFluxElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesTractionElement< ELEMENT >::zeta_nodal(), oomph::ImposeImpenetrabilityElement< ELEMENT >::zeta_nodal(), oomph::ImposeParallelOutflowElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesSurfaceDragTorqueElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesSurfacePowerElement< ELEMENT >::zeta_nodal(), oomph::PMLFourierDecomposedHelmholtzPowerMonitorElement< ELEMENT >::zeta_nodal(), oomph::PMLHelmholtzPowerElement< ELEMENT >::zeta_nodal(), oomph::PMLHelmholtzFluxElement< ELEMENT >::zeta_nodal(), oomph::PMLTimeHarmonicLinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::PoissonFluxElement< ELEMENT >::zeta_nodal(), oomph::PoroelasticityFaceElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesSpaceTimeTractionElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesMixedOrderSpaceTimeTractionElement< ELEMENT >::zeta_nodal(), oomph::SphericalAdvectionDiffusionFluxElement< ELEMENT >::zeta_nodal(), oomph::SteadyAxisymAdvectionDiffusionFluxElement< ELEMENT >::zeta_nodal(), oomph::TimeHarmonicFourierDecomposedLinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::TimeHarmonicLinearElasticityTractionElement< ELEMENT >::zeta_nodal(), oomph::UnsteadyHeatFluxElement< ELEMENT >::zeta_nodal(), oomph::NavierStokesImpedanceTractionElement< BULK_NAVIER_STOKES_ELEMENT, WOMERSLEY_ELEMENT, DIM >::zeta_nodal(), oomph::YoungLaplaceContactAngleElement< ELEMENT >::zeta_nodal(), AxisymmetricVibratingShellProblem< ELEMENT >::~AxisymmetricVibratingShellProblem(), BubbleInChannelProblem< ELEMENT >::~BubbleInChannelProblem(), DropInChannelProblem< ELEMENT >::~DropInChannelProblem(), HomogenisationProblem< ELEMENT >::~HomogenisationProblem(), RefineableBin::~RefineableBin(), RefineableBinArray::~RefineableBinArray(), TwoLayerInterfaceProblem< ELEMENT >::~TwoLayerInterfaceProblem(), UnstructuredFluidProblem< ELEMENT >::~UnstructuredFluidProblem(), UnstructuredImmersedEllipseProblem< ELEMENT >::~UnstructuredImmersedEllipseProblem(), VibratingShellProblem< ELEMENT >::~VibratingShellProblem(), and oomph::WarpedCircularDisk::~WarpedCircularDisk().