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#include <projection.h>
Public Member Functions | |
ProjectableElement () | |
virtual void | residual_for_projection (Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag) |
double | zeta_nodal (const unsigned &n, const unsigned &k, const unsigned &i) const |
void | enable_projection () |
void | disable_projection () |
void | set_project_coordinates () |
Project (history values of) coordintes. More... | |
void | set_project_values () |
Project (history values of) values. More... | |
void | set_project_lagrangian () |
Project (current and only values of) lagrangian coordinates. More... | |
unsigned & | projected_field () |
Field that is currently being projected. More... | |
unsigned & | time_level_for_projection () |
Which history value are we projecting? More... | |
unsigned & | projected_coordinate () |
unsigned & | projected_lagrangian_coordinate () |
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ProjectableElementBase () | |
virtual | ~ProjectableElementBase () |
Virtual destructor. More... | |
virtual Vector< std::pair< Data *, unsigned > > | data_values_of_field (const unsigned &fld)=0 |
virtual unsigned | nfields_for_projection ()=0 |
virtual unsigned | nhistory_values_for_projection (const unsigned &fld)=0 |
virtual unsigned | nhistory_values_for_coordinate_projection ()=0 |
virtual unsigned | nvalue_of_field (const unsigned &fld)=0 |
virtual int | local_equation (const unsigned &fld, const unsigned &ivalue)=0 |
virtual double | jacobian_and_shape_of_field (const unsigned &fld, const Vector< double > &s, Shape &psi)=0 |
virtual double | get_field (const unsigned &time, const unsigned &fld, const Vector< double > &s)=0 |
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ElementWithExternalElement () | |
virtual | ~ElementWithExternalElement () |
The destructor, clean up any allocated memory. More... | |
ElementWithExternalElement (const ElementWithExternalElement &)=delete | |
Broken copy constructor. More... | |
void | operator= (const ElementWithExternalElement &)=delete |
Broken assignment operator. More... | |
bool | storage_has_been_allocated () const |
Helper function to check if storage has actually been allocated. More... | |
FiniteElement *& | external_element_pt (const unsigned &interaction_index, const unsigned &ipt) |
FiniteElement *const & | external_element_pt (const unsigned &interaction_index, const unsigned &ipt) const |
Access function to source element, const version. More... | |
Vector< double > & | external_element_local_coord (const unsigned &interaction_index, const unsigned &ipt) |
Vector< double > const & | external_element_local_coord (const unsigned &interaction_index, const unsigned &ipt) const |
Access function to get source element's coords, const version. More... | |
void | output_external_elements (std::ostream &outfile, const unsigned &interaction_index) |
void | initialise_external_element_storage () |
void | flush_all_external_element_storage () |
Flush the storage for external elements. More... | |
void | set_ninteraction (const unsigned &n_interaction) |
unsigned | ninteraction () const |
Return the number of interactions in the element. More... | |
virtual void | identify_all_field_data_for_external_interaction (Vector< std::set< FiniteElement * >> const &external_elements_pt, std::set< std::pair< Data *, unsigned >> &paired_interaction_data) |
virtual void | identify_all_geometric_data_for_external_interaction (Vector< std::set< FiniteElement * >> const &external_elements_pt, std::set< Data * > &external_geometric_data_pt) |
unsigned | nexternal_interaction_field_data () const |
Vector< Data * > | external_interaction_field_data_pt () const |
unsigned | nexternal_interaction_geometric_data () const |
bool | add_external_geometric_data () |
Are we including external geometric data in the element's Jacobian. More... | |
bool | add_external_interaction_data () |
Are we including external data in the element's Jacobian. More... | |
Vector< Data * > | external_interaction_geometric_data_pt () const |
void | ignore_external_geometric_data () |
void | ignore_external_interaction_data () |
void | include_external_geometric_data () |
void | include_external_interaction_data () |
bool | external_geometric_data_is_included () const |
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void | set_dimension (const unsigned &dim) |
void | set_nodal_dimension (const unsigned &nodal_dim) |
void | set_nnodal_position_type (const unsigned &nposition_type) |
Set the number of types required to interpolate the coordinate. More... | |
void | set_n_node (const unsigned &n) |
int | nodal_local_eqn (const unsigned &n, const unsigned &i) const |
double | dJ_eulerian_at_knot (const unsigned &ipt, Shape &psi, DenseMatrix< double > &djacobian_dX) const |
FiniteElement () | |
Constructor. More... | |
virtual | ~FiniteElement () |
FiniteElement (const FiniteElement &)=delete | |
Broken copy constructor. More... | |
virtual bool | local_coord_is_valid (const Vector< double > &s) |
Broken assignment operator. More... | |
virtual void | move_local_coord_back_into_element (Vector< double > &s) const |
void | get_centre_of_gravity_and_max_radius_in_terms_of_zeta (Vector< double > &cog, double &max_radius) const |
virtual void | local_coordinate_of_node (const unsigned &j, Vector< double > &s) const |
virtual void | local_fraction_of_node (const unsigned &j, Vector< double > &s_fraction) |
virtual double | local_one_d_fraction_of_node (const unsigned &n1d, const unsigned &i) |
virtual void | set_macro_elem_pt (MacroElement *macro_elem_pt) |
MacroElement * | macro_elem_pt () |
Access function to pointer to macro element. More... | |
void | get_x (const Vector< double > &s, Vector< double > &x) const |
void | get_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) |
virtual void | get_x_from_macro_element (const Vector< double > &s, Vector< double > &x) const |
virtual void | get_x_from_macro_element (const unsigned &t, const Vector< double > &s, Vector< double > &x) |
virtual void | set_integration_scheme (Integral *const &integral_pt) |
Set the spatial integration scheme. More... | |
Integral *const & | integral_pt () const |
Return the pointer to the integration scheme (const version) More... | |
virtual void | shape (const Vector< double > &s, Shape &psi) const =0 |
virtual void | shape_at_knot (const unsigned &ipt, Shape &psi) const |
virtual void | dshape_local (const Vector< double > &s, Shape &psi, DShape &dpsids) const |
virtual void | dshape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids) const |
virtual void | d2shape_local (const Vector< double > &s, Shape &psi, DShape &dpsids, DShape &d2psids) const |
virtual void | d2shape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids, DShape &d2psids) const |
virtual double | J_eulerian (const Vector< double > &s) const |
virtual double | J_eulerian_at_knot (const unsigned &ipt) const |
void | check_J_eulerian_at_knots (bool &passed) const |
void | check_jacobian (const double &jacobian) const |
double | dshape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx) const |
virtual double | dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx) const |
virtual double | dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsi, DenseMatrix< double > &djacobian_dX, RankFourTensor< double > &d_dpsidx_dX) const |
double | d2shape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx, DShape &d2psidx) const |
virtual double | d2shape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, DShape &d2psidx) const |
virtual void | assign_nodal_local_eqn_numbers (const bool &store_local_dof_pt) |
virtual void | describe_nodal_local_dofs (std::ostream &out, const std::string ¤t_string) const |
virtual void | assign_all_generic_local_eqn_numbers (const bool &store_local_dof_pt) |
Node *& | node_pt (const unsigned &n) |
Return a pointer to the local node n. More... | |
Node *const & | node_pt (const unsigned &n) const |
Return a pointer to the local node n (const version) More... | |
unsigned | nnode () const |
Return the number of nodes. More... | |
virtual unsigned | nnode_1d () const |
double | raw_nodal_position (const unsigned &n, const unsigned &i) const |
double | raw_nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const |
double | raw_dnodal_position_dt (const unsigned &n, const unsigned &i) const |
double | raw_dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const |
double | raw_nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const |
double | raw_nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const |
double | raw_dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const |
double | raw_dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const |
double | nodal_position (const unsigned &n, const unsigned &i) const |
double | nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const |
double | dnodal_position_dt (const unsigned &n, const unsigned &i) const |
Return the i-th component of nodal velocity: dx/dt at local node n. More... | |
double | dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const |
double | nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const |
double | nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const |
double | dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const |
double | dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const |
virtual void | get_dresidual_dnodal_coordinates (RankThreeTensor< double > &dresidual_dnodal_coordinates) |
virtual void | disable_ALE () |
virtual void | enable_ALE () |
virtual unsigned | required_nvalue (const unsigned &n) const |
unsigned | nnodal_position_type () const |
bool | has_hanging_nodes () const |
unsigned | nodal_dimension () const |
Return the required Eulerian dimension of the nodes in this element. More... | |
virtual unsigned | nvertex_node () const |
virtual Node * | vertex_node_pt (const unsigned &j) const |
virtual Node * | construct_node (const unsigned &n) |
virtual Node * | construct_node (const unsigned &n, TimeStepper *const &time_stepper_pt) |
virtual Node * | construct_boundary_node (const unsigned &n) |
virtual Node * | construct_boundary_node (const unsigned &n, TimeStepper *const &time_stepper_pt) |
int | get_node_number (Node *const &node_pt) const |
virtual Node * | get_node_at_local_coordinate (const Vector< double > &s) const |
double | raw_nodal_value (const unsigned &n, const unsigned &i) const |
double | raw_nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const |
double | nodal_value (const unsigned &n, const unsigned &i) const |
double | nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const |
unsigned | dim () const |
virtual ElementGeometry::ElementGeometry | element_geometry () const |
Return the geometry type of the element (either Q or T usually). More... | |
virtual double | interpolated_x (const Vector< double > &s, const unsigned &i) const |
Return FE interpolated coordinate x[i] at local coordinate s. More... | |
virtual double | interpolated_x (const unsigned &t, const Vector< double > &s, const unsigned &i) const |
virtual void | interpolated_x (const Vector< double > &s, Vector< double > &x) const |
Return FE interpolated position x[] at local coordinate s as Vector. More... | |
virtual void | interpolated_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) const |
virtual double | interpolated_dxdt (const Vector< double > &s, const unsigned &i, const unsigned &t) |
virtual void | interpolated_dxdt (const Vector< double > &s, const unsigned &t, Vector< double > &dxdt) |
unsigned | ngeom_data () const |
Data * | geom_data_pt (const unsigned &j) |
void | position (const Vector< double > &zeta, Vector< double > &r) const |
void | position (const unsigned &t, const Vector< double > &zeta, Vector< double > &r) const |
void | dposition_dt (const Vector< double > &zeta, const unsigned &t, Vector< double > &drdt) |
void | interpolated_zeta (const Vector< double > &s, Vector< double > &zeta) const |
void | locate_zeta (const Vector< double > &zeta, GeomObject *&geom_object_pt, Vector< double > &s, const bool &use_coordinate_as_initial_guess=false) |
virtual void | node_update () |
virtual void | identify_field_data_for_interactions (std::set< std::pair< Data *, unsigned >> &paired_field_data) |
virtual void | identify_geometric_data (std::set< Data * > &geometric_data_pt) |
virtual double | s_min () const |
Min value of local coordinate. More... | |
virtual double | s_max () const |
Max. value of local coordinate. More... | |
double | size () const |
virtual double | compute_physical_size () const |
virtual void | point_output_data (const Vector< double > &s, Vector< double > &data) |
void | point_output (std::ostream &outfile, const Vector< double > &s) |
virtual unsigned | nplot_points_paraview (const unsigned &nplot) const |
virtual unsigned | nsub_elements_paraview (const unsigned &nplot) const |
void | output_paraview (std::ofstream &file_out, const unsigned &nplot) const |
virtual void | write_paraview_output_offset_information (std::ofstream &file_out, const unsigned &nplot, unsigned &counter) const |
virtual void | write_paraview_type (std::ofstream &file_out, const unsigned &nplot) const |
virtual void | write_paraview_offsets (std::ofstream &file_out, const unsigned &nplot, unsigned &offset_sum) const |
virtual unsigned | nscalar_paraview () const |
virtual void | scalar_value_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot) const |
virtual void | scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const |
virtual void | scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const |
virtual std::string | scalar_name_paraview (const unsigned &i) const |
virtual void | output (std::ostream &outfile) |
virtual void | output (std::ostream &outfile, const unsigned &n_plot) |
virtual void | output (const unsigned &t, std::ostream &outfile, const unsigned &n_plot) const |
virtual void | output (FILE *file_pt) |
virtual void | output (FILE *file_pt, const unsigned &n_plot) |
virtual void | output_fct (std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) |
Output an exact solution over the element. More... | |
virtual void | output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) |
Output a time-dependent exact solution over the element. More... | |
virtual void | output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, const SolutionFunctorBase &exact_soln) const |
Output a time-dependent exact solution over the element. More... | |
virtual void | get_s_plot (const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const |
virtual std::string | tecplot_zone_string (const unsigned &nplot) const |
virtual void | write_tecplot_zone_footer (std::ostream &outfile, const unsigned &nplot) const |
virtual void | write_tecplot_zone_footer (FILE *file_pt, const unsigned &nplot) const |
virtual unsigned | nplot_points (const unsigned &nplot) const |
virtual void | compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm) |
Calculate the norm of the error and that of the exact solution. More... | |
virtual void | compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm) |
Calculate the norm of the error and that of the exact solution. More... | |
virtual void | compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm) |
virtual void | compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm) |
virtual void | compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm) |
virtual void | compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm) |
virtual void | compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm) |
virtual void | compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm) |
virtual void | compute_abs_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error) |
void | integrate_fct (FiniteElement::SteadyExactSolutionFctPt integrand_fct_pt, Vector< double > &integral) |
Integrate Vector-valued function over element. More... | |
void | integrate_fct (FiniteElement::UnsteadyExactSolutionFctPt integrand_fct_pt, const double &time, Vector< double > &integral) |
Integrate Vector-valued time-dep function over element. More... | |
virtual void | build_face_element (const int &face_index, FaceElement *face_element_pt) |
virtual unsigned | self_test () |
virtual unsigned | get_bulk_node_number (const int &face_index, const unsigned &i) const |
virtual int | face_outer_unit_normal_sign (const int &face_index) const |
Get the sign of the outer unit normal on the face given by face_index. More... | |
virtual unsigned | nnode_on_face () const |
void | face_node_number_error_check (const unsigned &i) const |
Range check for face node numbers. More... | |
virtual CoordinateMappingFctPt | face_to_bulk_coordinate_fct_pt (const int &face_index) const |
virtual BulkCoordinateDerivativesFctPt | bulk_coordinate_derivatives_fct_pt (const int &face_index) const |
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GeneralisedElement () | |
Constructor: Initialise all pointers and all values to zero. More... | |
virtual | ~GeneralisedElement () |
Virtual destructor to clean up any memory allocated by the object. More... | |
GeneralisedElement (const GeneralisedElement &)=delete | |
Broken copy constructor. More... | |
void | operator= (const GeneralisedElement &)=delete |
Broken assignment operator. More... | |
Data *& | internal_data_pt (const unsigned &i) |
Return a pointer to i-th internal data object. More... | |
Data *const & | internal_data_pt (const unsigned &i) const |
Return a pointer to i-th internal data object (const version) More... | |
Data *& | external_data_pt (const unsigned &i) |
Return a pointer to i-th external data object. More... | |
Data *const & | external_data_pt (const unsigned &i) const |
Return a pointer to i-th external data object (const version) More... | |
unsigned long | eqn_number (const unsigned &ieqn_local) const |
int | local_eqn_number (const unsigned long &ieqn_global) const |
unsigned | add_external_data (Data *const &data_pt, const bool &fd=true) |
bool | external_data_fd (const unsigned &i) const |
void | exclude_external_data_fd (const unsigned &i) |
void | include_external_data_fd (const unsigned &i) |
void | flush_external_data () |
Flush all external data. More... | |
void | flush_external_data (Data *const &data_pt) |
Flush the object addressed by data_pt from the external data array. More... | |
unsigned | ninternal_data () const |
Return the number of internal data objects. More... | |
unsigned | nexternal_data () const |
Return the number of external data objects. More... | |
unsigned | ndof () const |
Return the number of equations/dofs in the element. More... | |
void | dof_vector (const unsigned &t, Vector< double > &dof) |
Return the vector of dof values at time level t. More... | |
void | dof_pt_vector (Vector< double * > &dof_pt) |
Return the vector of pointers to dof values. More... | |
void | set_internal_data_time_stepper (const unsigned &i, TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data) |
void | assign_internal_eqn_numbers (unsigned long &global_number, Vector< double * > &Dof_pt) |
void | describe_dofs (std::ostream &out, const std::string ¤t_string) const |
void | add_internal_value_pt_to_map (std::map< unsigned, double * > &map_of_value_pt) |
virtual void | assign_local_eqn_numbers (const bool &store_local_dof_pt) |
virtual void | complete_setup_of_dependencies () |
virtual void | get_residuals (Vector< double > &residuals) |
virtual void | get_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
virtual void | get_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix) |
virtual void | get_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix) |
virtual void | get_dresiduals_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam) |
virtual void | get_djacobian_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam) |
virtual void | get_djacobian_and_dmass_matrix_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam) |
virtual void | get_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product) |
virtual void | get_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product) |
virtual void | get_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector) |
virtual void | compute_norm (Vector< double > &norm) |
virtual void | compute_norm (double &norm) |
virtual unsigned | ndof_types () const |
virtual void | get_dof_numbers_for_unknowns (std::list< std::pair< unsigned long, unsigned >> &dof_lookup_list) const |
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GeomObject () | |
Default constructor. More... | |
GeomObject (const unsigned &ndim) | |
GeomObject (const unsigned &nlagrangian, const unsigned &ndim) | |
GeomObject (const unsigned &nlagrangian, const unsigned &ndim, TimeStepper *time_stepper_pt) | |
GeomObject (const GeomObject &dummy)=delete | |
Broken copy constructor. More... | |
void | operator= (const GeomObject &)=delete |
Broken assignment operator. More... | |
virtual | ~GeomObject () |
(Empty) destructor More... | |
unsigned | nlagrangian () const |
Access function to # of Lagrangian coordinates. More... | |
unsigned | ndim () const |
Access function to # of Eulerian coordinates. More... | |
void | set_nlagrangian_and_ndim (const unsigned &n_lagrangian, const unsigned &n_dim) |
Set # of Lagrangian and Eulerian coordinates. More... | |
TimeStepper *& | time_stepper_pt () |
TimeStepper * | time_stepper_pt () const |
virtual void | position (const double &t, const Vector< double > &zeta, Vector< double > &r) const |
virtual void | dposition (const Vector< double > &zeta, DenseMatrix< double > &drdzeta) const |
virtual void | d2position (const Vector< double > &zeta, RankThreeTensor< double > &ddrdzeta) const |
virtual void | d2position (const Vector< double > &zeta, Vector< double > &r, DenseMatrix< double > &drdzeta, RankThreeTensor< double > &ddrdzeta) const |
Protected Member Functions | |
void | fill_in_contribution_to_residuals (Vector< double > &residuals) |
Overloaded version of fill_in_contribution_to_residuals. More... | |
void | describe_local_dofs (std::ostream &out, const std::string ¤t_string) const |
void | fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
Overloaded version of fill_in_contribution_to_jacobian. More... | |
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void | assign_internal_and_external_local_eqn_numbers (const bool &store_local_dof_pt) |
void | assign_external_interaction_data_local_eqn_numbers (const bool &store_local_dof_pt) |
void | fill_in_jacobian_from_external_interaction_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
void | fill_in_jacobian_from_external_interaction_by_fd (DenseMatrix< double > &jacobian) |
void | fill_in_jacobian_from_external_interaction_field_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
void | fill_in_jacobian_from_external_interaction_field_by_fd (DenseMatrix< double > &jacobian) |
void | fill_in_jacobian_from_external_interaction_geometric_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
void | fill_in_jacobian_from_external_interaction_geometric_by_fd (DenseMatrix< double > &jacobian) |
virtual void | update_before_external_interaction_field_fd () |
virtual void | reset_after_external_interaction_field_fd () |
virtual void | update_in_external_interaction_field_fd (const unsigned &i) |
virtual void | reset_in_external_interaction_field_fd (const unsigned &i) |
virtual void | update_before_external_interaction_geometric_fd () |
virtual void | reset_after_external_interaction_geometric_fd () |
virtual void | update_in_external_interaction_geometric_fd (const unsigned &i) |
virtual void | reset_in_external_interaction_geometric_fd (const unsigned &i) |
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virtual void | assemble_local_to_eulerian_jacobian (const DShape &dpsids, DenseMatrix< double > &jacobian) const |
virtual void | assemble_local_to_eulerian_jacobian2 (const DShape &d2psids, DenseMatrix< double > &jacobian2) const |
virtual void | assemble_eulerian_base_vectors (const DShape &dpsids, DenseMatrix< double > &interpolated_G) const |
template<unsigned DIM> | |
double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
virtual double | invert_jacobian_mapping (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
virtual double | local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
double | local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const |
virtual double | local_to_eulerian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
virtual void | dJ_eulerian_dnodal_coordinates (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
template<unsigned DIM> | |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
virtual void | d_dshape_eulerian_dnodal_coordinates (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
template<unsigned DIM> | |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
virtual void | transform_derivatives (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const |
void | transform_derivatives_diagonal (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const |
virtual void | transform_second_derivatives (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
template<unsigned DIM> | |
void | transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
template<unsigned DIM> | |
void | transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
virtual void | fill_in_jacobian_from_nodal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
void | fill_in_jacobian_from_nodal_by_fd (DenseMatrix< double > &jacobian) |
virtual void | update_before_nodal_fd () |
virtual void | reset_after_nodal_fd () |
virtual void | update_in_nodal_fd (const unsigned &i) |
virtual void | reset_in_nodal_fd (const unsigned &i) |
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double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
Zero-d specialisation of function to calculate inverse of jacobian mapping. More... | |
template<> | |
double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
One-d specialisation of function to calculate inverse of jacobian mapping. More... | |
template<> | |
double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
Two-d specialisation of function to calculate inverse of jacobian mapping. More... | |
template<> | |
double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
template<> | |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
template<> | |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
template<> | |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
template<> | |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
template<> | |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
template<> | |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
template<> | |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
template<> | |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
template<> | |
void | transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
template<> | |
void | transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
template<> | |
void | transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
template<> | |
void | transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
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unsigned | add_internal_data (Data *const &data_pt, const bool &fd=true) |
bool | internal_data_fd (const unsigned &i) const |
void | exclude_internal_data_fd (const unsigned &i) |
void | include_internal_data_fd (const unsigned &i) |
void | clear_global_eqn_numbers () |
void | add_global_eqn_numbers (std::deque< unsigned long > const &global_eqn_numbers, std::deque< double * > const &global_dof_pt) |
virtual void | assign_additional_local_eqn_numbers () |
int | internal_local_eqn (const unsigned &i, const unsigned &j) const |
int | external_local_eqn (const unsigned &i, const unsigned &j) |
void | fill_in_jacobian_from_internal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false) |
void | fill_in_jacobian_from_internal_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false) |
void | fill_in_jacobian_from_external_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false) |
void | fill_in_jacobian_from_external_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false) |
virtual void | update_before_internal_fd () |
virtual void | reset_after_internal_fd () |
virtual void | update_in_internal_fd (const unsigned &i) |
virtual void | reset_in_internal_fd (const unsigned &i) |
virtual void | update_before_external_fd () |
virtual void | reset_after_external_fd () |
virtual void | update_in_external_fd (const unsigned &i) |
virtual void | reset_in_external_fd (const unsigned &i) |
virtual void | fill_in_contribution_to_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix) |
virtual void | fill_in_contribution_to_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix) |
virtual void | fill_in_contribution_to_dresiduals_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam) |
virtual void | fill_in_contribution_to_djacobian_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam) |
virtual void | fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam) |
virtual void | fill_in_contribution_to_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product) |
virtual void | fill_in_contribution_to_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product) |
virtual void | fill_in_contribution_to_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector) |
Wrapper class for projectable elements. Adds "projectability" to the underlying ELEMENT.
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Function to describe the local dofs of the element. The ostream specifies the output stream to which the description is written; the string stores the currently assembled output that is ultimately written to the output stream by Data::describe_dofs(...); it is typically built up incrementally as we descend through the call hierarchy of this function when called from Problem::describe_dofs(...)
Reimplemented from oomph::ElementWithExternalElement.
References oomph::ElementWithExternalElement::describe_local_dofs(), and out().
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Helper function to restore the element to the state it was in before we entered the projection mode and switch off projection mode.
References oomph::ProjectableElementBase::Backup_external_geometric_data, oomph::ProjectableElementBase::Backup_external_interaction_data, oomph::ProjectableElementBase::Backup_ninteraction, oomph::ProjectableElementBase::Do_projection, oomph::ElementWithExternalElement::ignore_external_geometric_data(), oomph::ElementWithExternalElement::ignore_external_interaction_data(), oomph::ElementWithExternalElement::include_external_geometric_data(), oomph::ElementWithExternalElement::include_external_interaction_data(), and oomph::ElementWithExternalElement::set_ninteraction().
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Backup the element's state and switch it to projection mode.
References oomph::ElementWithExternalElement::add_external_geometric_data(), oomph::ElementWithExternalElement::add_external_interaction_data(), oomph::ProjectableElementBase::Backup_external_geometric_data, oomph::ProjectableElementBase::Backup_external_interaction_data, oomph::ProjectableElementBase::Backup_ninteraction, oomph::ProjectableElementBase::Do_projection, oomph::ElementWithExternalElement::ignore_external_geometric_data(), oomph::ElementWithExternalElement::ignore_external_interaction_data(), oomph::ElementWithExternalElement::ninteraction(), and oomph::ElementWithExternalElement::set_ninteraction().
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Overloaded version of fill_in_contribution_to_jacobian.
Reimplemented from oomph::ElementWithExternalElement.
References oomph::ProjectableElementBase::Do_projection, oomph::fill_in_contribution_to_jacobian(), and oomph::ProjectableElement< ELEMENT >::residual_for_projection().
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Overloaded version of fill_in_contribution_to_residuals.
Reimplemented from oomph::GeneralisedElement.
References oomph::ProjectableElementBase::Do_projection, oomph::GeneralisedElement::Dummy_matrix, oomph::fill_in_contribution_to_residuals(), and oomph::ProjectableElement< ELEMENT >::residual_for_projection().
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When projecting the history values of the nodal coordinates, this is the coordinate we're projecting
References oomph::ProjectableElementBase::Projected_coordinate.
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Field that is currently being projected.
References oomph::ProjectableElementBase::Projected_field.
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When projecting the Lagrangian coordinates this is the coordinate that is being projected
References oomph::ProjectableElementBase::Projected_lagrangian.
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Residual for the projection step. Flag indicates if we want the Jacobian (1) or not (0). Virtual so it can be overloaded if necessary
Reimplemented in oomph::ProjectableDarcyElement< DARCY_ELEMENT >, and oomph::ProjectableAxisymmetricPoroelasticityElement< AXISYMMETRIC_POROELASTICITY_ELEMENT >.
References oomph::ProjectableElementBase::Coordinate, oomph::FiniteElement::dim(), oomph::ElementWithExternalElement::external_element_local_coord(), oomph::ElementWithExternalElement::external_element_pt(), oomph::ProjectableElementBase::get_field(), i, oomph::FiniteElement::integral_pt(), oomph::FiniteElement::interpolated_x(), J, oomph::FiniteElement::J_eulerian(), oomph::ProjectableElementBase::jacobian_and_shape_of_field(), k, oomph::Integral::knot(), oomph::ProjectableElementBase::Lagrangian, oomph::ProjectableElementBase::local_equation(), oomph::FiniteElement::nnodal_position_type(), oomph::FiniteElement::nnode(), oomph::ProjectableElementBase::nvalue_of_field(), oomph::Integral::nweight(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::SolidFiniteElement::position_local_eqn(), oomph::ProjectableElementBase::Projected_coordinate, oomph::ProjectableElementBase::Projected_field, oomph::ProjectableElementBase::Projected_lagrangian, oomph::ProjectableElementBase::Projection_type, s, oomph::FiniteElement::shape(), oomph::ProjectableElementBase::Time_level_for_projection, oomph::ProjectableElementBase::Value, w, oomph::QuadTreeNames::W, and oomph::Integral::weight().
Referenced by oomph::ProjectableElement< ELEMENT >::fill_in_contribution_to_jacobian(), and oomph::ProjectableElement< ELEMENT >::fill_in_contribution_to_residuals().
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Project (history values of) coordintes.
References oomph::ProjectableElementBase::Coordinate, and oomph::ProjectableElementBase::Projection_type.
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Project (current and only values of) lagrangian coordinates.
References oomph::ProjectableElementBase::Lagrangian, and oomph::ProjectableElementBase::Projection_type.
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Project (history values of) values.
References oomph::ProjectableElementBase::Projection_type, and oomph::ProjectableElementBase::Value.
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Which history value are we projecting?
References oomph::ProjectableElementBase::Time_level_for_projection.
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Use Eulerian coordinates for matching in locate_zeta when doing projection
Reimplemented from oomph::FiniteElement.
References oomph::ProjectableElementBase::Do_projection, i, k, n, and oomph::FiniteElement::nodal_position_gen().