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#include <single_layer_cubic_spine_mesh.template.h>
Public Member Functions | |
SingleLayerCubicSpineMesh (const unsigned &nx, const unsigned &ny, const unsigned &nz, const double &lx, const double &ly, const double &h, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper) | |
virtual void | spine_node_update (SpineNode *spine_node_pt) |
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SimpleCubicMesh (const unsigned &nx, const unsigned &ny, const unsigned &nz, const double &lx, const double &ly, const double &lz, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper) | |
SimpleCubicMesh (const unsigned &nx, const unsigned &ny, const unsigned &nz, const double &xmin, const double &xmax, const double &ymin, const double &ymax, const double &zmin, const double &zmax, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper) | |
const unsigned & | nx () const |
Access function for number of elements in x directions. More... | |
const unsigned & | ny () const |
Access function for number of elements in y directions. More... | |
const unsigned & | nz () const |
Access function for number of elements in y directions. More... | |
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BrickMeshBase () | |
Constructor (empty) More... | |
BrickMeshBase (const BrickMeshBase &)=delete | |
Broken copy constructor. More... | |
virtual | ~BrickMeshBase () |
Broken assignment operator. More... | |
void | setup_boundary_element_info () |
void | setup_boundary_element_info (std::ostream &outfile) |
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Mesh () | |
Default constructor. More... | |
Mesh (const Vector< Mesh * > &sub_mesh_pt) | |
void | merge_meshes (const Vector< Mesh * > &sub_mesh_pt) |
virtual void | reset_boundary_element_info (Vector< unsigned > &ntmp_boundary_elements, Vector< Vector< unsigned >> &ntmp_boundary_elements_in_region, Vector< FiniteElement * > &deleted_elements) |
Virtual function to perform the reset boundary elements info rutines. More... | |
template<class BULK_ELEMENT > | |
void | doc_boundary_coordinates (const unsigned &b, std::ofstream &the_file) |
virtual void | scale_mesh (const double &factor) |
Mesh (const Mesh &dummy)=delete | |
Broken copy constructor. More... | |
void | operator= (const Mesh &)=delete |
Broken assignment operator. More... | |
virtual | ~Mesh () |
Virtual Destructor to clean up all memory. More... | |
void | flush_element_and_node_storage () |
void | flush_element_storage () |
void | flush_node_storage () |
Node *& | node_pt (const unsigned long &n) |
Return pointer to global node n. More... | |
Node * | node_pt (const unsigned long &n) const |
Return pointer to global node n (const version) More... | |
GeneralisedElement *& | element_pt (const unsigned long &e) |
Return pointer to element e. More... | |
GeneralisedElement * | element_pt (const unsigned long &e) const |
Return pointer to element e (const version) More... | |
const Vector< GeneralisedElement * > & | element_pt () const |
Return reference to the Vector of elements. More... | |
Vector< GeneralisedElement * > & | element_pt () |
Return reference to the Vector of elements. More... | |
FiniteElement * | finite_element_pt (const unsigned &e) const |
Node *& | boundary_node_pt (const unsigned &b, const unsigned &n) |
Return pointer to node n on boundary b. More... | |
Node * | boundary_node_pt (const unsigned &b, const unsigned &n) const |
Return pointer to node n on boundary b. More... | |
void | set_nboundary (const unsigned &nbound) |
Set the number of boundaries in the mesh. More... | |
void | remove_boundary_nodes () |
Clear all pointers to boundary nodes. More... | |
void | remove_boundary_nodes (const unsigned &b) |
void | remove_boundary_node (const unsigned &b, Node *const &node_pt) |
Remove a node from the boundary b. More... | |
void | add_boundary_node (const unsigned &b, Node *const &node_pt) |
Add a (pointer to) a node to the b-th boundary. More... | |
void | copy_boundary_node_data_from_nodes () |
bool | boundary_coordinate_exists (const unsigned &i) const |
Indicate whether the i-th boundary has an intrinsic coordinate. More... | |
unsigned long | nelement () const |
Return number of elements in the mesh. More... | |
unsigned long | nnode () const |
Return number of nodes in the mesh. More... | |
unsigned | ndof_types () const |
Return number of dof types in mesh. More... | |
unsigned | elemental_dimension () const |
Return number of elemental dimension in mesh. More... | |
unsigned | nodal_dimension () const |
Return number of nodal dimension in mesh. More... | |
void | add_node_pt (Node *const &node_pt) |
Add a (pointer to a) node to the mesh. More... | |
void | add_element_pt (GeneralisedElement *const &element_pt) |
Add a (pointer to) an element to the mesh. More... | |
virtual void | reorder_nodes (const bool &use_old_ordering=true) |
virtual void | get_node_reordering (Vector< Node * > &reordering, const bool &use_old_ordering=true) const |
template<class BULK_ELEMENT , template< class > class FACE_ELEMENT> | |
void | build_face_mesh (const unsigned &b, Mesh *const &face_mesh_pt) |
unsigned | self_test () |
Self-test: Check elements and nodes. Return 0 for OK. More... | |
void | max_and_min_element_size (double &max_size, double &min_size) |
double | total_size () |
void | check_inverted_elements (bool &mesh_has_inverted_elements, std::ofstream &inverted_element_file) |
void | check_inverted_elements (bool &mesh_has_inverted_elements) |
unsigned | check_for_repeated_nodes (const double &epsilon=1.0e-12) |
Vector< Node * > | prune_dead_nodes () |
unsigned | nboundary () const |
Return number of boundaries. More... | |
unsigned long | nboundary_node (const unsigned &ibound) const |
Return number of nodes on a particular boundary. More... | |
FiniteElement * | boundary_element_pt (const unsigned &b, const unsigned &e) const |
Return pointer to e-th finite element on boundary b. More... | |
Node * | get_some_non_boundary_node () const |
unsigned | nboundary_element (const unsigned &b) const |
Return number of finite elements that are adjacent to boundary b. More... | |
int | face_index_at_boundary (const unsigned &b, const unsigned &e) const |
virtual void | dump (std::ofstream &dump_file, const bool &use_old_ordering=true) const |
Dump the data in the mesh into a file for restart. More... | |
void | dump (const std::string &dump_file_name, const bool &use_old_ordering=true) const |
Dump the data in the mesh into a file for restart. More... | |
void | output_paraview (std::ofstream &file_out, const unsigned &nplot) const |
void | output_fct_paraview (std::ofstream &file_out, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const |
void | output_fct_paraview (std::ofstream &file_out, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const |
void | output (std::ostream &outfile) |
Output for all elements. More... | |
void | output (std::ostream &outfile, const unsigned &n_plot) |
Output at f(n_plot) points in each element. More... | |
void | output (FILE *file_pt) |
Output for all elements (C-style output) More... | |
void | output (FILE *file_pt, const unsigned &nplot) |
Output at f(n_plot) points in each element (C-style output) More... | |
void | output (const std::string &output_filename) |
Output for all elements. More... | |
void | output (const std::string &output_filename, const unsigned &n_plot) |
Output at f(n_plot) points in each element. More... | |
void | output_fct (std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt) |
Output a given Vector function at f(n_plot) points in each element. More... | |
void | output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt) |
void | output_boundaries (std::ostream &outfile) |
Output the nodes on the boundaries (into separate tecplot zones) More... | |
void | output_boundaries (const std::string &output_filename) |
void | assign_initial_values_impulsive () |
Assign initial values for an impulsive start. More... | |
void | shift_time_values () |
void | calculate_predictions () |
void | set_nodal_and_elemental_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data) |
void | set_consistent_pinned_values_for_continuation (ContinuationStorageScheme *const &continuation_stepper_pt) |
Set consistent values for pinned data in continuation. More... | |
bool | does_pointer_correspond_to_mesh_data (double *const ¶meter_pt) |
Does the double pointer correspond to any mesh data. More... | |
void | set_nodal_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data) |
Set the timestepper associated with the nodal data in the mesh. More... | |
void | set_elemental_internal_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data) |
virtual void | compute_norm (double &norm) |
virtual void | compute_norm (Vector< double > &norm) |
virtual void | compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm) |
virtual void | compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm) |
virtual void | compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm) |
virtual void | compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm) |
virtual void | compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm) |
virtual void | compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm) |
virtual void | compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm) |
Returns the norm of the error and that of the exact solution. More... | |
virtual void | compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm) |
bool | is_mesh_distributed () const |
Boolean to indicate if Mesh has been distributed. More... | |
OomphCommunicator * | communicator_pt () const |
void | delete_all_external_storage () |
Wipe the storage for all externally-based elements. More... | |
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virtual | ~SpineMesh () |
Destructor to clean up the memory allocated to the spines. More... | |
Spine *& | spine_pt (const unsigned long &i) |
Return the i-th spine in the mesh. More... | |
const Spine * | spine_pt (const unsigned long &i) const |
Return the i-th spine in the mesh (const version) More... | |
unsigned long | nspine () const |
Return the number of spines in the mesh. More... | |
void | add_spine_pt (Spine *const &spine_pt) |
Add a spine to the mesh. More... | |
SpineNode * | node_pt (const unsigned long &n) |
Return a pointer to the n-th global SpineNode. More... | |
SpineNode * | element_node_pt (const unsigned long &e, const unsigned &n) |
unsigned long | assign_global_spine_eqn_numbers (Vector< double * > &Dof_pt) |
Assign spines to Spine_pt vector of element. More... | |
void | describe_spine_dofs (std::ostream &out, const std::string ¤t_string) const |
void | set_mesh_level_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data) |
void | set_spine_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data) |
Assign time stepper to spines data. More... | |
void | set_consistent_pinned_spine_values_for_continuation (ContinuationStorageScheme *const &continuation_stepper_pt) |
bool | does_pointer_correspond_to_spine_data (double *const ¶meter_pt) |
void | node_update (const bool &update_all_solid_nodes=false) |
void | dump (std::ofstream &dump_file) const |
Overload the dump function so that the spine data is dumped. More... | |
void | read (std::ifstream &restart_file) |
Overload the read function so that the spine data is also read. More... | |
Protected Member Functions | |
virtual void | build_single_layer_mesh (TimeStepper *time_stepper_pt) |
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void | build_mesh (TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper) |
Generic mesh construction function: contains all the hard work. More... | |
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unsigned long | assign_global_eqn_numbers (Vector< double * > &Dof_pt) |
Assign (global) equation numbers to the nodes. More... | |
void | describe_dofs (std::ostream &out, const std::string ¤t_string) const |
void | describe_local_dofs (std::ostream &out, const std::string ¤t_string) const |
void | assign_local_eqn_numbers (const bool &store_local_dof_pt) |
Assign local equation numbers in all elements. More... | |
void | convert_to_boundary_node (Node *&node_pt, const Vector< FiniteElement * > &finite_element_pt) |
void | convert_to_boundary_node (Node *&node_pt) |
Additional Inherited Members | |
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typedef void(FiniteElement::* | SteadyExactSolutionFctPt) (const Vector< double > &x, Vector< double > &soln) |
typedef void(FiniteElement::* | UnsteadyExactSolutionFctPt) (const double &time, const Vector< double > &x, Vector< double > &soln) |
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static Steady< 0 > | Default_TimeStepper |
The Steady Timestepper. More... | |
static bool | Suppress_warning_about_empty_mesh_level_time_stepper_function |
Static boolean flag to control warning about mesh level timesteppers. More... | |
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unsigned | Nx |
Number of elements in x direction. More... | |
unsigned | Ny |
Number of elements in y direction. More... | |
unsigned | Nz |
Number of elements in y direction. More... | |
double | Xmin |
Minimum value of x coordinate. More... | |
double | Xmax |
Maximum value of x coordinate. More... | |
double | Ymin |
Minimum value of y coordinate. More... | |
double | Ymax |
Minimum value of y coordinate. More... | |
double | Zmin |
Minimum value of z coordinate. More... | |
double | Zmax |
Maximum value of z coordinate. More... | |
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Vector< Vector< Node * > > | Boundary_node_pt |
bool | Lookup_for_elements_next_boundary_is_setup |
Vector< Vector< FiniteElement * > > | Boundary_element_pt |
Vector< Vector< int > > | Face_index_at_boundary |
Vector< Node * > | Node_pt |
Vector of pointers to nodes. More... | |
Vector< GeneralisedElement * > | Element_pt |
Vector of pointers to generalised elements. More... | |
std::vector< bool > | Boundary_coordinate_exists |
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Vector< Spine * > | Spine_pt |
A Spine mesh contains a Vector of pointers to spines. More... | |
Spine mesh class derived from standard cubic 3D mesh. The mesh contains a layer of spinified fluid elements (of type ELEMENT; e.g SpineElement<QCrouzeixRaviartElement<3>) for 3D problems, in which the interface's vertical position can vary
This mesh has been carefully designed so that the numeration of the nodes on the boundaries 0 and 5 (bottom and top) coincides with the numeration of the spines
oomph::SingleLayerCubicSpineMesh< ELEMENT >::SingleLayerCubicSpineMesh | ( | const unsigned & | nx, |
const unsigned & | ny, | ||
const unsigned & | nz, | ||
const double & | lx, | ||
const double & | ly, | ||
const double & | h, | ||
TimeStepper * | time_stepper_pt = &Mesh::Default_TimeStepper |
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Constructor: Pass number of elements in x-direction, number of elements in y-direction, number of elements in z-direction, lengths in x- and y- directions, height of layer, and pointer to timestepper (defaults to Steady timestepper)
Constructor for spine 3D mesh: Pass number of elements in x-direction, number of elements in y-direction, number elements in z-direction, length, width and height of layer, and pointer to timestepper (defaults to Static timestepper).
References oomph::SingleLayerCubicSpineMesh< ELEMENT >::build_single_layer_mesh().
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protectedvirtual |
Helper function to actually build the single-layer spine mesh (called from various constructors)
Helper function that actually builds the single-layer spine mesh based on the parameters set in the various constructors
References oomph::SpineNode::fraction(), i, j, k, GlobalParameters::Nx, GlobalParameters::Ny, Global_Parameters::Nz, oomph::SpineNode::spine_mesh_pt(), and oomph::SpineNode::spine_pt().
Referenced by oomph::SingleLayerCubicSpineMesh< ELEMENT >::SingleLayerCubicSpineMesh().
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inlinevirtual |
General node update function implements pure virtual function defined in SpineMesh base class and performs specific node update actions: along vertical spines
Implements oomph::SpineMesh.
Reimplemented in oomph::AnnularSpineMesh< ELEMENT >.
References oomph::SpineNode::fraction(), H, oomph::SpineNode::h(), oomph::QuadTreeNames::W, oomph::Node::x(), and oomph::SimpleCubicMesh< ELEMENT >::Zmin.