Inheritance diagram for oomph::AnnularSpineMesh< ELEMENT >:

Public Member Functions
	AnnularSpineMesh (const unsigned &n_r, const unsigned &n_y, const unsigned &n_theta, const double &r_min, const double &r_max, const double &l_y, const double &theta_min, const double &theta_max, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)

virtual void	spine_node_update (SpineNode *spine_node_pt)

Public Member Functions inherited from oomph::SingleLayerCubicSpineMesh< ELEMENT >
	SingleLayerCubicSpineMesh (const unsigned &nx, const unsigned &ny, const unsigned &nz, const double &lx, const double &ly, const double &h, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)

Public Member Functions inherited from oomph::SimpleCubicMesh< ELEMENT >
	SimpleCubicMesh (const unsigned &nx, const unsigned &ny, const unsigned &nz, const double &lx, const double &ly, const double &lz, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)

	SimpleCubicMesh (const unsigned &nx, const unsigned &ny, const unsigned &nz, const double &xmin, const double &xmax, const double &ymin, const double &ymax, const double &zmin, const double &zmax, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)

const unsigned &	nx () const
	Access function for number of elements in x directions. More...

const unsigned &	ny () const
	Access function for number of elements in y directions. More...

const unsigned &	nz () const
	Access function for number of elements in y directions. More...

Public Member Functions inherited from oomph::BrickMeshBase
	BrickMeshBase ()
	Constructor (empty) More...

	BrickMeshBase (const BrickMeshBase &)=delete
	Broken copy constructor. More...

virtual	~BrickMeshBase ()
	Broken assignment operator. More...

void	setup_boundary_element_info ()

void	setup_boundary_element_info (std::ostream &outfile)

Public Member Functions inherited from oomph::Mesh
	Mesh ()
	Default constructor. More...

	Mesh (const Vector< Mesh * > &sub_mesh_pt)

void	merge_meshes (const Vector< Mesh * > &sub_mesh_pt)

virtual void	reset_boundary_element_info (Vector< unsigned > &ntmp_boundary_elements, Vector< Vector< unsigned >> &ntmp_boundary_elements_in_region, Vector< FiniteElement * > &deleted_elements)
	Virtual function to perform the reset boundary elements info rutines. More...

template<class BULK_ELEMENT >
void	doc_boundary_coordinates (const unsigned &b, std::ofstream &the_file)

virtual void	scale_mesh (const double &factor)

	Mesh (const Mesh &dummy)=delete
	Broken copy constructor. More...

void	operator= (const Mesh &)=delete
	Broken assignment operator. More...

virtual	~Mesh ()
	Virtual Destructor to clean up all memory. More...

void	flush_element_and_node_storage ()

void	flush_element_storage ()

void	flush_node_storage ()

Node *&	node_pt (const unsigned long &n)
	Return pointer to global node n. More...

Node *	node_pt (const unsigned long &n) const
	Return pointer to global node n (const version) More...

GeneralisedElement *&	element_pt (const unsigned long &e)
	Return pointer to element e. More...

GeneralisedElement *	element_pt (const unsigned long &e) const
	Return pointer to element e (const version) More...

const Vector< GeneralisedElement * > &	element_pt () const
	Return reference to the Vector of elements. More...

Vector< GeneralisedElement * > &	element_pt ()
	Return reference to the Vector of elements. More...

FiniteElement *	finite_element_pt (const unsigned &e) const

Node *&	boundary_node_pt (const unsigned &b, const unsigned &n)
	Return pointer to node n on boundary b. More...

Node *	boundary_node_pt (const unsigned &b, const unsigned &n) const
	Return pointer to node n on boundary b. More...

void	set_nboundary (const unsigned &nbound)
	Set the number of boundaries in the mesh. More...

void	remove_boundary_nodes ()
	Clear all pointers to boundary nodes. More...

void	remove_boundary_nodes (const unsigned &b)

void	remove_boundary_node (const unsigned &b, Node *const &node_pt)
	Remove a node from the boundary b. More...

void	add_boundary_node (const unsigned &b, Node *const &node_pt)
	Add a (pointer to) a node to the b-th boundary. More...

void	copy_boundary_node_data_from_nodes ()

bool	boundary_coordinate_exists (const unsigned &i) const
	Indicate whether the i-th boundary has an intrinsic coordinate. More...

unsigned long	nelement () const
	Return number of elements in the mesh. More...

unsigned long	nnode () const
	Return number of nodes in the mesh. More...

unsigned	ndof_types () const
	Return number of dof types in mesh. More...

unsigned	elemental_dimension () const
	Return number of elemental dimension in mesh. More...

unsigned	nodal_dimension () const
	Return number of nodal dimension in mesh. More...

void	add_node_pt (Node *const &node_pt)
	Add a (pointer to a) node to the mesh. More...

void	add_element_pt (GeneralisedElement *const &element_pt)
	Add a (pointer to) an element to the mesh. More...

virtual void	reorder_nodes (const bool &use_old_ordering=true)

virtual void	get_node_reordering (Vector< Node * > &reordering, const bool &use_old_ordering=true) const

template<class BULK_ELEMENT , template< class > class FACE_ELEMENT>
void	build_face_mesh (const unsigned &b, Mesh *const &face_mesh_pt)

unsigned	self_test ()
	Self-test: Check elements and nodes. Return 0 for OK. More...

void	max_and_min_element_size (double &max_size, double &min_size)

double	total_size ()

void	check_inverted_elements (bool &mesh_has_inverted_elements, std::ofstream &inverted_element_file)

void	check_inverted_elements (bool &mesh_has_inverted_elements)

unsigned	check_for_repeated_nodes (const double &epsilon=1.0e-12)

Vector< Node * >	prune_dead_nodes ()

unsigned	nboundary () const
	Return number of boundaries. More...

unsigned long	nboundary_node (const unsigned &ibound) const
	Return number of nodes on a particular boundary. More...

FiniteElement *	boundary_element_pt (const unsigned &b, const unsigned &e) const
	Return pointer to e-th finite element on boundary b. More...

Node *	get_some_non_boundary_node () const

unsigned	nboundary_element (const unsigned &b) const
	Return number of finite elements that are adjacent to boundary b. More...

int	face_index_at_boundary (const unsigned &b, const unsigned &e) const

virtual void	dump (std::ofstream &dump_file, const bool &use_old_ordering=true) const
	Dump the data in the mesh into a file for restart. More...

void	dump (const std::string &dump_file_name, const bool &use_old_ordering=true) const
	Dump the data in the mesh into a file for restart. More...

void	output_paraview (std::ofstream &file_out, const unsigned &nplot) const

void	output_fct_paraview (std::ofstream &file_out, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const

void	output_fct_paraview (std::ofstream &file_out, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const

void	output (std::ostream &outfile)
	Output for all elements. More...

void	output (std::ostream &outfile, const unsigned &n_plot)
	Output at f(n_plot) points in each element. More...

void	output (FILE *file_pt)
	Output for all elements (C-style output) More...

void	output (FILE *file_pt, const unsigned &nplot)
	Output at f(n_plot) points in each element (C-style output) More...

void	output (const std::string &output_filename)
	Output for all elements. More...

void	output (const std::string &output_filename, const unsigned &n_plot)
	Output at f(n_plot) points in each element. More...

void	output_fct (std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt)
	Output a given Vector function at f(n_plot) points in each element. More...

void	output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt)

void	output_boundaries (std::ostream &outfile)
	Output the nodes on the boundaries (into separate tecplot zones) More...

void	output_boundaries (const std::string &output_filename)

void	assign_initial_values_impulsive ()
	Assign initial values for an impulsive start. More...

void	shift_time_values ()

void	calculate_predictions ()

void	set_nodal_and_elemental_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

void	set_consistent_pinned_values_for_continuation (ContinuationStorageScheme *const &continuation_stepper_pt)
	Set consistent values for pinned data in continuation. More...

bool	does_pointer_correspond_to_mesh_data (double *const &parameter_pt)
	Does the double pointer correspond to any mesh data. More...

void	set_nodal_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)
	Set the timestepper associated with the nodal data in the mesh. More...

void	set_elemental_internal_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

virtual void	compute_norm (double &norm)

virtual void	compute_norm (Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
	Returns the norm of the error and that of the exact solution. More...

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

bool	is_mesh_distributed () const
	Boolean to indicate if Mesh has been distributed. More...

OomphCommunicator *	communicator_pt () const

void	delete_all_external_storage ()
	Wipe the storage for all externally-based elements. More...

Public Member Functions inherited from oomph::SpineMesh
virtual	~SpineMesh ()
	Destructor to clean up the memory allocated to the spines. More...

Spine *&	spine_pt (const unsigned long &i)
	Return the i-th spine in the mesh. More...

const Spine *	spine_pt (const unsigned long &i) const
	Return the i-th spine in the mesh (const version) More...

unsigned long	nspine () const
	Return the number of spines in the mesh. More...

void	add_spine_pt (Spine *const &spine_pt)
	Add a spine to the mesh. More...

SpineNode *	node_pt (const unsigned long &n)
	Return a pointer to the n-th global SpineNode. More...

SpineNode *	element_node_pt (const unsigned long &e, const unsigned &n)

unsigned long	assign_global_spine_eqn_numbers (Vector< double * > &Dof_pt)
	Assign spines to Spine_pt vector of element. More...

void	describe_spine_dofs (std::ostream &out, const std::string &current_string) const

void	set_mesh_level_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

void	set_spine_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)
	Assign time stepper to spines data. More...

void	set_consistent_pinned_spine_values_for_continuation (ContinuationStorageScheme *const &continuation_stepper_pt)

bool	does_pointer_correspond_to_spine_data (double *const &parameter_pt)

void	node_update (const bool &update_all_solid_nodes=false)

void	dump (std::ofstream &dump_file) const
	Overload the dump function so that the spine data is dumped. More...

void	read (std::ifstream &restart_file)
	Overload the read function so that the spine data is also read. More...

Additional Inherited Members
Public Types inherited from oomph::Mesh
typedef void(FiniteElement::*	SteadyExactSolutionFctPt) (const Vector< double > &x, Vector< double > &soln)

typedef void(FiniteElement::*	UnsteadyExactSolutionFctPt) (const double &time, const Vector< double > &x, Vector< double > &soln)

Static Public Attributes inherited from oomph::Mesh
static Steady< 0 >	Default_TimeStepper
	The Steady Timestepper. More...

static bool	Suppress_warning_about_empty_mesh_level_time_stepper_function
	Static boolean flag to control warning about mesh level timesteppers. More...

Protected Member Functions inherited from oomph::SingleLayerCubicSpineMesh< ELEMENT >
virtual void	build_single_layer_mesh (TimeStepper *time_stepper_pt)

Protected Member Functions inherited from oomph::SimpleCubicMesh< ELEMENT >
void	build_mesh (TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
	Generic mesh construction function: contains all the hard work. More...

Protected Member Functions inherited from oomph::Mesh
unsigned long	assign_global_eqn_numbers (Vector< double * > &Dof_pt)
	Assign (global) equation numbers to the nodes. More...

void	describe_dofs (std::ostream &out, const std::string &current_string) const

void	describe_local_dofs (std::ostream &out, const std::string &current_string) const

void	assign_local_eqn_numbers (const bool &store_local_dof_pt)
	Assign local equation numbers in all elements. More...

void	convert_to_boundary_node (Node &node_pt, const Vector< FiniteElement > &finite_element_pt)

void	convert_to_boundary_node (Node *&node_pt)

Protected Attributes inherited from oomph::SimpleCubicMesh< ELEMENT >
unsigned	Nx
	Number of elements in x direction. More...

unsigned	Ny
	Number of elements in y direction. More...

unsigned	Nz
	Number of elements in y direction. More...

double	Xmin
	Minimum value of x coordinate. More...

double	Xmax
	Maximum value of x coordinate. More...

double	Ymin
	Minimum value of y coordinate. More...

double	Ymax
	Minimum value of y coordinate. More...

double	Zmin
	Minimum value of z coordinate. More...

double	Zmax
	Maximum value of z coordinate. More...

Protected Attributes inherited from oomph::Mesh
Vector< Vector< Node * > >	Boundary_node_pt

bool	Lookup_for_elements_next_boundary_is_setup

Vector< Vector< FiniteElement * > >	Boundary_element_pt

Vector< Vector< int > >	Face_index_at_boundary

Vector< Node * >	Node_pt
	Vector of pointers to nodes. More...

Vector< GeneralisedElement * >	Element_pt
	Vector of pointers to generalised elements. More...

std::vector< bool >	Boundary_coordinate_exists

Protected Attributes inherited from oomph::SpineMesh
Vector< Spine * >	Spine_pt
	A Spine mesh contains a Vector of pointers to spines. More...

Detailed Description

template<class ELEMENT>
class oomph::AnnularSpineMesh< ELEMENT >

Deform the existing cubic spine mesh into a annular section with spines directed radially inwards from the wall

Constructor & Destructor Documentation

◆ AnnularSpineMesh()

template<class ELEMENT >

oomph::AnnularSpineMesh< ELEMENT >::AnnularSpineMesh	(	const unsigned &	n_r,
		const unsigned &	n_y,
		const unsigned &	n_theta,
		const double &	r_min,
		const double &	r_max,
		const double &	l_y,
		const double &	theta_min,
		const double &	theta_max,
		TimeStepper *	time_stepper_pt = `&Mesh::Default_TimeStepper`
	)

inline

                                                                    :
    //This will make a cubic mesh with n_r in the x-direction
    //n_y in the y-direction and n_theta in the z-direction
    //The coordinates will run from 0 to r_max, 0 to l_y and 0 to theta_max
    SingleLayerCubicSpineMesh<ELEMENT>(n_theta,n_y,n_r,r_max,l_y,theta_max,
                                       time_stepper_pt)
   {  
    
     //Find out how many nodes there are
     unsigned n_node = this->nnode();
  
     //Loop over all nodes
     for (unsigned n=0;n<n_node;n++)
       {
     //pointer to node
     Node* nod_pt=this->node_pt(n);
     SpineNode* spine_node_pt=dynamic_cast<SpineNode*>(nod_pt);
     //Get x/y/z coordinates
     double x_old=nod_pt->x(0);
     double y_old=nod_pt->x(1);
     double z_old=nod_pt->x(2);
  
     //Mapping
     
     double r = r_min + (r_max-r_min)*z_old;
         double theta = (theta_min + (theta_max-theta_min)*x_old);
     double y = y_old;
     
     
     if(spine_node_pt->spine_pt()->ngeom_parameter()==0)
       {
            spine_node_pt->h() =
             Global_Physical_Variables::Film_Thickness; 
         spine_node_pt->spine_pt()->add_geom_parameter(theta);
       }
     
     //cout << spine_node_pt->spine_pt()->ngeom_parameter()  << std::endl;
     //Set new nodal coordinates
     nod_pt->x(0)=r*cos(theta);
     nod_pt->x(2)=r*sin(theta);
     nod_pt->x(1)=y;
     //cout << "one" << theta << std::endl;  
       }
  
   }

References oomph::Spine::add_geom_parameter(), cos(), Global_Physical_Variables::Film_Thickness, oomph::SpineNode::h(), n, oomph::Spine::ngeom_parameter(), UniformPSDSelfTest::r, BiharmonicTestFunctions2::r_max, BiharmonicTestFunctions2::r_min, sin(), oomph::SpineNode::spine_pt(), BiharmonicTestFunctions2::theta, oomph::Node::x(), and y.

Member Function Documentation

◆ spine_node_update()

template<class ELEMENT >

virtual void oomph::AnnularSpineMesh< ELEMENT >::spine_node_update ( SpineNode * spine_node_pt )

inlinevirtual

General node update function implements pure virtual function defined in SpineMesh base class and performs specific node update actions: along vertical spines

Reimplemented from oomph::SingleLayerCubicSpineMesh< ELEMENT >.

   {
    //Get fraction along the spine
    double W = spine_node_pt->fraction();
    //Get theta along the spine
    double theta = spine_node_pt->spine_pt()->geom_parameter(0);
    //Get spine height
    double H = spine_node_pt->h();
    //Set the value of y
    spine_node_pt->x(0) = (1.0-W*H)*cos(theta);
    spine_node_pt->x(2) = (1.0-W*H)*sin(theta);
   }

References cos(), oomph::SpineNode::fraction(), oomph::Spine::geom_parameter(), H, oomph::SpineNode::h(), sin(), oomph::SpineNode::spine_pt(), BiharmonicTestFunctions2::theta, oomph::QuadTreeNames::W, and oomph::Node::x().

The documentation for this class was generated from the following file:

3d_rayleigh_instability_surfactant.cc

Public Member Functions