#include <spines.h>

Inheritance diagram for oomph::SpineMesh:

Public Member Functions
virtual	~SpineMesh ()
	Destructor to clean up the memory allocated to the spines. More...

Spine *&	spine_pt (const unsigned long &i)
	Return the i-th spine in the mesh. More...

const Spine *	spine_pt (const unsigned long &i) const
	Return the i-th spine in the mesh (const version) More...

unsigned long	nspine () const
	Return the number of spines in the mesh. More...

void	add_spine_pt (Spine *const &spine_pt)
	Add a spine to the mesh. More...

SpineNode *	node_pt (const unsigned long &n)
	Return a pointer to the n-th global SpineNode. More...

SpineNode *	element_node_pt (const unsigned long &e, const unsigned &n)

unsigned long	assign_global_spine_eqn_numbers (Vector< double * > &Dof_pt)
	Assign spines to Spine_pt vector of element. More...

void	describe_spine_dofs (std::ostream &out, const std::string &current_string) const

void	set_mesh_level_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

void	set_spine_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)
	Assign time stepper to spines data. More...

void	set_consistent_pinned_spine_values_for_continuation (ContinuationStorageScheme *const &continuation_stepper_pt)

bool	does_pointer_correspond_to_spine_data (double *const &parameter_pt)

void	node_update (const bool &update_all_solid_nodes=false)

virtual void	spine_node_update (SpineNode *spine_node_pt)=0

void	dump (std::ofstream &dump_file) const
	Overload the dump function so that the spine data is dumped. More...

void	read (std::ifstream &restart_file)
	Overload the read function so that the spine data is also read. More...

Public Member Functions inherited from oomph::Mesh
	Mesh ()
	Default constructor. More...

	Mesh (const Vector< Mesh * > &sub_mesh_pt)

void	merge_meshes (const Vector< Mesh * > &sub_mesh_pt)

virtual void	setup_boundary_element_info ()

virtual void	setup_boundary_element_info (std::ostream &outfile)

virtual void	reset_boundary_element_info (Vector< unsigned > &ntmp_boundary_elements, Vector< Vector< unsigned >> &ntmp_boundary_elements_in_region, Vector< FiniteElement * > &deleted_elements)
	Virtual function to perform the reset boundary elements info rutines. More...

template<class BULK_ELEMENT >
void	doc_boundary_coordinates (const unsigned &b, std::ofstream &the_file)

virtual void	scale_mesh (const double &factor)

	Mesh (const Mesh &dummy)=delete
	Broken copy constructor. More...

void	operator= (const Mesh &)=delete
	Broken assignment operator. More...

virtual	~Mesh ()
	Virtual Destructor to clean up all memory. More...

void	flush_element_and_node_storage ()

void	flush_element_storage ()

void	flush_node_storage ()

Node *&	node_pt (const unsigned long &n)
	Return pointer to global node n. More...

Node *	node_pt (const unsigned long &n) const
	Return pointer to global node n (const version) More...

GeneralisedElement *&	element_pt (const unsigned long &e)
	Return pointer to element e. More...

GeneralisedElement *	element_pt (const unsigned long &e) const
	Return pointer to element e (const version) More...

const Vector< GeneralisedElement * > &	element_pt () const
	Return reference to the Vector of elements. More...

Vector< GeneralisedElement * > &	element_pt ()
	Return reference to the Vector of elements. More...

FiniteElement *	finite_element_pt (const unsigned &e) const

Node *&	boundary_node_pt (const unsigned &b, const unsigned &n)
	Return pointer to node n on boundary b. More...

Node *	boundary_node_pt (const unsigned &b, const unsigned &n) const
	Return pointer to node n on boundary b. More...

void	set_nboundary (const unsigned &nbound)
	Set the number of boundaries in the mesh. More...

void	remove_boundary_nodes ()
	Clear all pointers to boundary nodes. More...

void	remove_boundary_nodes (const unsigned &b)

void	remove_boundary_node (const unsigned &b, Node *const &node_pt)
	Remove a node from the boundary b. More...

void	add_boundary_node (const unsigned &b, Node *const &node_pt)
	Add a (pointer to) a node to the b-th boundary. More...

void	copy_boundary_node_data_from_nodes ()

bool	boundary_coordinate_exists (const unsigned &i) const
	Indicate whether the i-th boundary has an intrinsic coordinate. More...

unsigned long	nelement () const
	Return number of elements in the mesh. More...

unsigned long	nnode () const
	Return number of nodes in the mesh. More...

unsigned	ndof_types () const
	Return number of dof types in mesh. More...

unsigned	elemental_dimension () const
	Return number of elemental dimension in mesh. More...

unsigned	nodal_dimension () const
	Return number of nodal dimension in mesh. More...

void	add_node_pt (Node *const &node_pt)
	Add a (pointer to a) node to the mesh. More...

void	add_element_pt (GeneralisedElement *const &element_pt)
	Add a (pointer to) an element to the mesh. More...

virtual void	reorder_nodes (const bool &use_old_ordering=true)

virtual void	get_node_reordering (Vector< Node * > &reordering, const bool &use_old_ordering=true) const

template<class BULK_ELEMENT , template< class > class FACE_ELEMENT>
void	build_face_mesh (const unsigned &b, Mesh *const &face_mesh_pt)

unsigned	self_test ()
	Self-test: Check elements and nodes. Return 0 for OK. More...

void	max_and_min_element_size (double &max_size, double &min_size)

double	total_size ()

void	check_inverted_elements (bool &mesh_has_inverted_elements, std::ofstream &inverted_element_file)

void	check_inverted_elements (bool &mesh_has_inverted_elements)

unsigned	check_for_repeated_nodes (const double &epsilon=1.0e-12)

Vector< Node * >	prune_dead_nodes ()

unsigned	nboundary () const
	Return number of boundaries. More...

unsigned long	nboundary_node (const unsigned &ibound) const
	Return number of nodes on a particular boundary. More...

FiniteElement *	boundary_element_pt (const unsigned &b, const unsigned &e) const
	Return pointer to e-th finite element on boundary b. More...

Node *	get_some_non_boundary_node () const

unsigned	nboundary_element (const unsigned &b) const
	Return number of finite elements that are adjacent to boundary b. More...

int	face_index_at_boundary (const unsigned &b, const unsigned &e) const

virtual void	dump (std::ofstream &dump_file, const bool &use_old_ordering=true) const
	Dump the data in the mesh into a file for restart. More...

void	dump (const std::string &dump_file_name, const bool &use_old_ordering=true) const
	Dump the data in the mesh into a file for restart. More...

void	output_paraview (std::ofstream &file_out, const unsigned &nplot) const

void	output_fct_paraview (std::ofstream &file_out, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const

void	output_fct_paraview (std::ofstream &file_out, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const

void	output (std::ostream &outfile)
	Output for all elements. More...

void	output (std::ostream &outfile, const unsigned &n_plot)
	Output at f(n_plot) points in each element. More...

void	output (FILE *file_pt)
	Output for all elements (C-style output) More...

void	output (FILE *file_pt, const unsigned &nplot)
	Output at f(n_plot) points in each element (C-style output) More...

void	output (const std::string &output_filename)
	Output for all elements. More...

void	output (const std::string &output_filename, const unsigned &n_plot)
	Output at f(n_plot) points in each element. More...

void	output_fct (std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt)
	Output a given Vector function at f(n_plot) points in each element. More...

void	output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt)

void	output_boundaries (std::ostream &outfile)
	Output the nodes on the boundaries (into separate tecplot zones) More...

void	output_boundaries (const std::string &output_filename)

void	assign_initial_values_impulsive ()
	Assign initial values for an impulsive start. More...

void	shift_time_values ()

void	calculate_predictions ()

void	set_nodal_and_elemental_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

void	set_consistent_pinned_values_for_continuation (ContinuationStorageScheme *const &continuation_stepper_pt)
	Set consistent values for pinned data in continuation. More...

bool	does_pointer_correspond_to_mesh_data (double *const &parameter_pt)
	Does the double pointer correspond to any mesh data. More...

void	set_nodal_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)
	Set the timestepper associated with the nodal data in the mesh. More...

void	set_elemental_internal_time_stepper (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

virtual void	compute_norm (double &norm)

virtual void	compute_norm (Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
	Returns the norm of the error and that of the exact solution. More...

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

bool	is_mesh_distributed () const
	Boolean to indicate if Mesh has been distributed. More...

OomphCommunicator *	communicator_pt () const

void	delete_all_external_storage ()
	Wipe the storage for all externally-based elements. More...

Protected Attributes
Vector< Spine * >	Spine_pt
	A Spine mesh contains a Vector of pointers to spines. More...

Protected Attributes inherited from oomph::Mesh
Vector< Vector< Node * > >	Boundary_node_pt

bool	Lookup_for_elements_next_boundary_is_setup

Vector< Vector< FiniteElement * > >	Boundary_element_pt

Vector< Vector< int > >	Face_index_at_boundary

Vector< Node * >	Node_pt
	Vector of pointers to nodes. More...

Vector< GeneralisedElement * >	Element_pt
	Vector of pointers to generalised elements. More...

std::vector< bool >	Boundary_coordinate_exists

Additional Inherited Members
Public Types inherited from oomph::Mesh
typedef void(FiniteElement::*	SteadyExactSolutionFctPt) (const Vector< double > &x, Vector< double > &soln)

typedef void(FiniteElement::*	UnsteadyExactSolutionFctPt) (const double &time, const Vector< double > &x, Vector< double > &soln)

Static Public Attributes inherited from oomph::Mesh
static Steady< 0 >	Default_TimeStepper
	The Steady Timestepper. More...

static bool	Suppress_warning_about_empty_mesh_level_time_stepper_function
	Static boolean flag to control warning about mesh level timesteppers. More...

Protected Member Functions inherited from oomph::Mesh
unsigned long	assign_global_eqn_numbers (Vector< double * > &Dof_pt)
	Assign (global) equation numbers to the nodes. More...

void	describe_dofs (std::ostream &out, const std::string &current_string) const

void	describe_local_dofs (std::ostream &out, const std::string &current_string) const

void	assign_local_eqn_numbers (const bool &store_local_dof_pt)
	Assign local equation numbers in all elements. More...

void	convert_to_boundary_node (Node &node_pt, const Vector< FiniteElement > &finite_element_pt)

void	convert_to_boundary_node (Node *&node_pt)

Detailed Description

/////////////////////////////////////////////////////////////////////// /////////////////////////////////////////////////////////////////////// /////////////////////////////////////////////////////////////////////// General SpineMesh class.

Derived from Mesh with virtual so that spine meshes can be derived from general meshes, without multiple copies of Mesh objects.

Constructor & Destructor Documentation

◆ ~SpineMesh()

SpineMesh::~SpineMesh ( )

virtual

Destructor to clean up the memory allocated to the spines.

//////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////

   {
     // Set the range of Spine_pt
     unsigned long Spine_pt_range = Spine_pt.size();
     // Loop over the entries in reverse and free memory
     for (unsigned long i = Spine_pt_range; i > 0; i--)
     {
       delete Spine_pt[i - 1];
       Spine_pt[i - 1] = 0;
     }
   }

References i, and Spine_pt.

Member Function Documentation

◆ add_spine_pt()

void oomph::SpineMesh::add_spine_pt ( Spine *const & spine_pt )

inline

Add a spine to the mesh.

     {
       Spine_pt.push_back(spine_pt);
     }

References Spine_pt, and spine_pt().

◆ assign_global_spine_eqn_numbers()

unsigned long SpineMesh::assign_global_spine_eqn_numbers ( Vector< double * > & Dof_pt )

Assign spines to Spine_pt vector of element.

Assign (global) equation numbers to spines, nodes and elements.

Assign equation numbers for spines

   {
     // Find the current number of dofs
     unsigned long equation_number = Dof_pt.size();
  
     // Loop over spines and set global equation numbers for the spine heights
     // (they are the only Data items whose global eqn numbers are assigned
     // here)
     unsigned long Spine_pt_range = Spine_pt.size();
     for (unsigned long i = 0; i < Spine_pt_range; i++)
     {
       Spine_pt[i]->spine_height_pt()->assign_eqn_numbers(equation_number,
                                                          Dof_pt);
     }
  
     // Return the total number of equations
     return (equation_number);
   }

References i, and Spine_pt.

◆ describe_spine_dofs()

void SpineMesh::describe_spine_dofs	(	std::ostream &	out,
		const std::string &	current_string
	)		const

Function to describe the dofs of the Spine. The ostream specifies the output stream to which the description is written; the string stores the currently assembled output that is ultimately written to the output stream by Data::describe_dofs(...); it is typically built up incrementally as we descend through the call hierarchy of this function when called from Problem::describe_dofs(...)

   {
     // Describe spine heights.
     unsigned long Spine_pt_range = Spine_pt.size();
     for (unsigned long i = 0; i < Spine_pt_range; i++)
     {
       std::stringstream conversion;
       conversion << " of Spine Height " << i << current_string;
       std::string in(conversion.str());
       Spine_pt[i]->spine_height_pt()->describe_dofs(out, in);
     }
   }

References i, out(), Spine_pt, and oomph::Global_string_for_annotation::string().

◆ does_pointer_correspond_to_spine_data()

bool SpineMesh::does_pointer_correspond_to_spine_data ( double *const & parameter_pt )

Check whether the pointer parameter_pt addresses data stored in the spines

Return true if the pointer addresses data stored within the spines, false if not.

   {
     // Loop over spines and check their data
     const unsigned long n_spine = this->nspine();
     for (unsigned long i = 0; i < n_spine; i++)
     {
       if (this->Spine_pt[i]
             ->spine_height_pt()
             ->does_pointer_correspond_to_value(parameter_pt))
       {
         return true;
       }
     }
  
     // If we haven't found it yet, then it's not present in the spine data
     return false;
   }

References i, nspine(), and Spine_pt.

◆ dump()

void SpineMesh::dump ( std::ofstream & dump_file ) const

Overload the dump function so that the spine data is dumped.

Overload the dump function so that the spine data is also dumped.

   {
     // Call the standard mesh dump function
     Mesh::dump(dump_file);
  
     // Now loop over the spine data and dump the spine height data
     // The ASSUMPTION is that the geometric data is stored elsewhere and will
     // be dumped elsewhere
  
     // Find the number of spines
     unsigned long n_spine = nspine();
     // Doc number of spines
     dump_file << n_spine << " # number of spines " << std::endl;
  
     // Loop over the spines
     for (unsigned long s = 0; s < n_spine; s++)
     {
       spine_pt(s)->spine_height_pt()->dump(dump_file);
     }
   }

References oomph::Mesh::dump(), oomph::Data::dump(), nspine(), s, oomph::Spine::spine_height_pt(), and spine_pt().

◆ element_node_pt()

SpineNode* oomph::SpineMesh::element_node_pt	(	const unsigned long &	e,
		const unsigned &	n
	)

inline

Return the n-th local SpineNode in element e. This is required to cast the nodes in a spine mesh to be SpineNodes and therefore allow access to the extra SpineNode data

     {
 #ifdef PARANOID
       // Try to cast to FiniteElement
       FiniteElement* el_pt = dynamic_cast<FiniteElement*>(Element_pt[e]);
       if (el_pt == 0)
       {
         throw OomphLibError(
           "Can't execute element_node_pt(...) for non FiniteElements",
           OOMPH_CURRENT_FUNCTION,
           OOMPH_EXCEPTION_LOCATION);
       }
       if (!dynamic_cast<SpineNode*>(el_pt->node_pt(n)))
       {
         std::ostringstream error_message;
         error_message << "Node " << n << "is a "
                       << typeid(el_pt->node_pt(n)).name() << ", not a SpineNode"
                       << std::endl;
  
         throw OomphLibError(error_message.str(),
                             OOMPH_CURRENT_FUNCTION,
                             OOMPH_EXCEPTION_LOCATION);
       }
 #endif
       // Return a cast to the node pointer
       return (dynamic_cast<SpineNode*>(
         dynamic_cast<FiniteElement*>(Element_pt[e])->node_pt(n)));
     }

References e(), oomph::Mesh::Element_pt, n, plotDoE::name, oomph::FiniteElement::node_pt(), node_pt(), OOMPH_CURRENT_FUNCTION, and OOMPH_EXCEPTION_LOCATION.

Referenced by SimpleSpineMesh< ELEMENT >::SimpleSpineMesh().

◆ node_pt()

SpineNode* oomph::SpineMesh::node_pt ( const unsigned long & n )

inline

Return a pointer to the n-th global SpineNode.

     {
 #ifdef PARANOID
       if (!dynamic_cast<SpineNode*>(Node_pt[n]))
       {
         std::ostringstream error_message;
         error_message << "Node " << n << "is a " << typeid(Node_pt[n]).name()
                       << ", not a SpineNode" << std::endl;
  
         throw OomphLibError(error_message.str(),
                             OOMPH_CURRENT_FUNCTION,
                             OOMPH_EXCEPTION_LOCATION);
       }
 #endif
       // Return a cast to the pointer to the node
       return (dynamic_cast<SpineNode*>(Node_pt[n]));
     }

References n, plotDoE::name, oomph::Mesh::Node_pt, OOMPH_CURRENT_FUNCTION, and OOMPH_EXCEPTION_LOCATION.

Referenced by CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), doc_sparse_node_update(), element_node_pt(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_xeq0(), and CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_yeq0().

◆ node_update()

void SpineMesh::node_update ( const bool & update_all_solid_nodes = false )

virtual

Update function to update all nodes of mesh [Doesn't make sense to use this mesh with SolidElements anyway, so we buffer the case if update_all_solid_nodes is set to true.]

Update function to update all nodes of mesh. [Doesn't make sense to use this mesh with SolidElements anyway, so we buffer the case if update_all_solid_nodes (which defaults to false) is set to true.]

Reimplemented from oomph::Mesh.

   {
 #ifdef PARANOID
     if (update_all_solid_nodes)
     {
       std::string error_message =
         "Doesn't make sense to use an SpineMesh with\n";
       error_message +=
         "SolidElements so specifying update_all_solid_nodes=true\n";
       error_message += "doesn't make sense either\n";
  
       throw OomphLibError(
         error_message, OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
     }
 #endif
  
     // Loop over all the nodes
     unsigned long Node_pt_range = Node_pt.size();
     for (unsigned long l = 0; l < Node_pt_range; l++)
     {
 #ifdef PARANOID
       if (!dynamic_cast<SpineNode*>(Node_pt[l]))
       {
         std::ostringstream error_stream;
         error_stream << "Error: Node " << l << "is a "
                      << typeid(Node_pt[l]).name() << ", not a SpineNode"
                      << std::endl;
         throw OomphLibError(
           error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
       }
 #endif
  
       // Need to cast to spine node to get to update function
       dynamic_cast<SpineNode*>(Node_pt[l])->node_update();
     }
   }

References plotDoE::name, oomph::Mesh::Node_pt, OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, and oomph::Global_string_for_annotation::string().

Referenced by InterfaceProblem< ELEMENT, TIMESTEPPER >::actions_before_newton_convergence_check(), CapProblem< ELEMENT >::actions_before_newton_convergence_check(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), MeltSpinningProblem< ELEMENT >::deform_free_surface(), AxisymFreeSurfaceNozzleAdvDiffRobinProblem< ELEMENT >::deform_free_surface(), InterfaceProblem< ELEMENT, TIMESTEPPER >::deform_free_surface(), doc_sparse_node_update(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_xeq0(), and CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_yeq0().

◆ nspine()

unsigned long oomph::SpineMesh::nspine ( ) const

inline

Return the number of spines in the mesh.

     {
       return Spine_pt.size();
     }

References Spine_pt.

Referenced by CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), MeltSpinningProblem< ELEMENT >::deform_free_surface(), AxisymFreeSurfaceNozzleAdvDiffRobinProblem< ELEMENT >::deform_free_surface(), InterfaceProblem< ELEMENT, TIMESTEPPER >::deform_free_surface(), does_pointer_correspond_to_spine_data(), dump(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::pin_all_spines(), read(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_xeq0(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_yeq0(), set_consistent_pinned_spine_values_for_continuation(), set_spine_time_stepper(), and SimpleSpineMesh< ELEMENT >::SimpleSpineMesh().

◆ read()

void SpineMesh::read ( std::ifstream & restart_file )

virtual

Overload the read function so that the spine data is also read.

Overload the read function so that the spine data is read from the restart file

Reimplemented from oomph::Mesh.

   {
     // Call the standard mesh read function
     Mesh::read(restart_file);
  
     // Now loop over the spine data and dump the spine height data
     // The ASSUMPTION is that the geometric data is stored elsewhere and will
     // be dumped elsewhere
  
     // Get the number of spines
     unsigned long n_spine = nspine();
  
     std::string input_string;
     // Read line up to termination sign
     getline(restart_file, input_string, '#');
     // Ignore the restr of the line
     restart_file.ignore(80, '\n');
  
     // check the number of spines
     unsigned long check_n_spine = atoi(input_string.c_str());
  
     if (check_n_spine != n_spine)
     {
       std::ostringstream error_stream;
       error_stream << "Number of spines in the restart file, " << check_n_spine
                    << std::endl
                    << "does not equal the number of spines in the mesh "
                    << n_spine << std::endl;
  
       throw OomphLibError(
         error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
     }
  
     // Loop over the spines and read the data
     for (unsigned long s = 0; s < n_spine; s++)
     {
       spine_pt(s)->spine_height_pt()->read(restart_file);
     }
   }

References nspine(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::Mesh::read(), oomph::Data::read(), s, oomph::Spine::spine_height_pt(), spine_pt(), and oomph::Global_string_for_annotation::string().

◆ set_consistent_pinned_spine_values_for_continuation()

void SpineMesh::set_consistent_pinned_spine_values_for_continuation ( ContinuationStorageScheme *const & continuation_stepper_pt )

Set any pinned spine "history" values to be consistent for continuation problems

Set the data associated with pinned spine values to be consistent for continuation when using the continuation storage scheme

   {
     // Loop over spines and set consistent values by using the function
     // provided by the continuation storage scheme
     const unsigned long n_spine = this->nspine();
     for (unsigned long i = 0; i < n_spine; i++)
     {
       continuation_stepper_pt->set_consistent_pinned_values(
         this->Spine_pt[i]->spine_height_pt());
     }
   }

References i, nspine(), oomph::ContinuationStorageScheme::set_consistent_pinned_values(), and Spine_pt.

◆ set_mesh_level_time_stepper()

void oomph::SpineMesh::set_mesh_level_time_stepper	(	TimeStepper *const &	time_stepper_pt,
		const bool &	preserve_existing_data
	)

inlinevirtual

Overload the mesh_level timestepper function to set the timestepper data for the spines

Reimplemented from oomph::Mesh.

     {
       this->set_spine_time_stepper(time_stepper_pt, preserve_existing_data);
     }

References set_spine_time_stepper().

◆ set_spine_time_stepper()

void SpineMesh::set_spine_time_stepper	(	TimeStepper *const &	time_stepper_pt,
		const bool &	preserve_existing_data
	)

Assign time stepper to spines data.

Set the time stepper forthe spine data that is stored in the mesh.

   {
     // Loop over spines and set the time stepper for the spine heights
     // (they are the only Data that are additional to the standard nodal and
     // elemental)
     const unsigned long n_spine = this->nspine();
     for (unsigned long i = 0; i < n_spine; i++)
     {
       this->Spine_pt[i]->spine_height_pt()->set_time_stepper(
         time_stepper_pt, preserve_existing_data);
     }
   }

References i, nspine(), and Spine_pt.

Referenced by set_mesh_level_time_stepper().

◆ spine_node_update()

virtual void oomph::SpineMesh::spine_node_update ( SpineNode * spine_node_pt )

pure virtual

Update function for given spine node – this must be implemented by all specific SpineMeshes.

Referenced by oomph::SpineNode::node_update().

◆ spine_pt() [1/2]

Spine*& oomph::SpineMesh::spine_pt ( const unsigned long & i )

inline

Return the i-th spine in the mesh.

     {
       return Spine_pt[i];
     }

References i, and Spine_pt.

Referenced by add_spine_pt(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), STSpineMesh< ELEMENT, INTERFACE_ELEMENT >::build_single_layer_mesh(), MeltSpinningProblem< ELEMENT >::deform_free_surface(), AxisymFreeSurfaceNozzleAdvDiffRobinProblem< ELEMENT >::deform_free_surface(), InterfaceProblem< ELEMENT, TIMESTEPPER >::deform_free_surface(), dump(), oomph::BrethertonSpineMesh< ELEMENT, INTERFACE_ELEMENT >::pin_all_spines(), read(), CombCanSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90(), CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_xeq0(), and CombTipSpineMesh< ELEMENT, INTERFACE_ELEMENT >::rotate_90_zeq1_yeq0().

◆ spine_pt() [2/2]

const Spine* oomph::SpineMesh::spine_pt ( const unsigned long & i ) const

inline

Return the i-th spine in the mesh (const version)

     {
       return Spine_pt[i];
     }

References i, and Spine_pt.

Member Data Documentation

◆ Spine_pt

Vector<Spine*> oomph::SpineMesh::Spine_pt

protected

A Spine mesh contains a Vector of pointers to spines.

Referenced by add_spine_pt(), assign_global_spine_eqn_numbers(), oomph::ChannelSpineMesh< ELEMENT >::centre_spine_pt(), describe_spine_dofs(), does_pointer_correspond_to_spine_data(), oomph::ChannelSpineMesh< ELEMENT >::left_spine_pt(), nspine(), oomph::ChannelSpineMesh< ELEMENT >::right_spine_pt(), set_consistent_pinned_spine_values_for_continuation(), set_spine_time_stepper(), SimpleSpineMesh< ELEMENT >::SimpleSpineMesh(), spine_pt(), and ~SpineMesh().

The documentation for this class was generated from the following files:

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ ~SpineMesh()

Member Function Documentation

◆ add_spine_pt()

◆ assign_global_spine_eqn_numbers()

◆ describe_spine_dofs()

◆ does_pointer_correspond_to_spine_data()

◆ dump()

◆ element_node_pt()

◆ node_pt()

◆ node_update()

◆ nspine()

◆ read()

◆ set_consistent_pinned_spine_values_for_continuation()

◆ set_mesh_level_time_stepper()

◆ set_spine_time_stepper()

◆ spine_node_update()

◆ spine_pt() [1/2]

◆ spine_pt() [2/2]

Member Data Documentation

◆ Spine_pt