Overload CrouzeixRaviart element to modify output. More...

Inheritance diagram for oomph::MyCrouzeixRaviartElement:

Public Member Functions
	MyCrouzeixRaviartElement ()
	Constructor initialise error. More...

void	set_error (const double &error)
	Set error value for post-processing. More...

std::string	variable_identifier ()
	Return variable identifier. More...

void	output (std::ostream &outfile, const unsigned &nplot)
	Overload output function. More...

	MyCrouzeixRaviartElement ()
	Constructor initialise error. More...

void	set_error (const double &error)
	Set error value for post-processing. More...

std::string	variable_identifier ()
	Return variable identifier. More...

void	output (std::ostream &outfile, const unsigned &nplot)
	Overload output function. More...

double	square_of_l2_norm ()
	Get square of L2 norm of velocity. More...

Public Member Functions inherited from oomph::PseudoSolidNodeUpdateElement< TCrouzeixRaviartElement< 2 >, TPVDBubbleEnrichedElement< 2, 3 > >
	PseudoSolidNodeUpdateElement ()

void	describe_local_dofs (std::ostream &out, const std::string &current_string) const

void	compute_norm (double &el_norm)

unsigned	required_nvalue (const unsigned &n) const
	The required number of values is the sum of the two. More...

int	solid_p_nodal_index () const

void	fill_in_contribution_to_residuals (Vector< double > &residuals)

void	fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_contribution_to_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)

void	evaluate_shape_derivs_by_direct_fd ()
	Evaluate shape derivatives by direct finite differencing. More...

void	evaluate_shape_derivs_by_chain_rule ()
	Evaluate shape derivatives by chain rule. More...

void	fill_in_shape_derivatives (DenseMatrix< double > &jacobian)

void	fill_in_shape_derivatives_by_fd (DenseMatrix< double > &jacobian)

void	identify_geometric_data (std::set< Data * > &geometric_data_pt)

void	output (std::ostream &outfile)
	Overload the output function: Call that of the basic element. More...

void	output (std::ostream &outfile, const unsigned &n_p)

void	output (FILE *file_pt)
	Overload the output function: Call that of the basic element. More...

void	output (FILE *file_pt, const unsigned &n_p)
	Output function is just the same as the basic equations. More...

unsigned	num_Z2_flux_terms ()

void	compute_exact_Z2_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_flux_pt, double &error, double &norm)

void	get_Z2_flux (const Vector< double > &s, Vector< double > &flux)

unsigned	nvertex_node () const
	Number of vertex nodes in the element. More...

Node *	vertex_node_pt (const unsigned &j) const
	Pointer to the j-th vertex node in the element. More...

unsigned	nrecovery_order ()

unsigned	ndof_types () const

unsigned	nbasic_dof_types () const

unsigned	nsolid_dof_types () const

void	get_dof_numbers_for_unknowns (std::list< std::pair< unsigned long, unsigned >> &dof_lookup_list) const

Public Member Functions inherited from oomph::TCrouzeixRaviartElement< DIM >
void	pshape_nst (const Vector< double > &s, Shape &psi) const
	Pressure shape functions at local coordinate s. More...

void	pshape_nst (const Vector< double > &s, Shape &psi, Shape &test) const
	Pressure shape and test functions at local coordinte s. More...

void	unpin_all_internal_pressure_dofs ()
	Unpin all internal pressure dofs. More...

int	p_local_eqn (const unsigned &n) const
	Return the local equation numbers for the pressure values. More...

	TCrouzeixRaviartElement ()
	Constructor, there are DIM+1 internal values (for the pressure) More...

	TCrouzeixRaviartElement (const TCrouzeixRaviartElement< DIM > &dummy)=delete
	Broken copy constructor. More...

double	p_nst (const unsigned &i) const

double	p_nst (const unsigned &t, const unsigned &i) const

unsigned	npres_nst () const
	Return number of pressure values. More...

void	fix_pressure (const unsigned &p_dof, const double &p_value)
	Pin p_dof-th pressure dof and set it to value specified by p_value. More...

void	build_fp_press_adv_diff_robin_bc_element (const unsigned &face_index)

void	identify_load_data (std::set< std::pair< Data *, unsigned >> &paired_load_data)

void	identify_pressure_data (std::set< std::pair< Data *, unsigned >> &paired_pressure_data)

void	full_output (std::ostream &outfile)

void	full_output (std::ostream &outfile, const unsigned &nplot)

void	pshape_nst (const Vector< double > &s, Shape &psi) const

void	pshape_nst (const Vector< double > &s, Shape &psi, Shape &test) const
	Pressure shape and test functions. More...

void	pshape_nst (const Vector< double > &s, Shape &psi) const

void	pshape_nst (const Vector< double > &s, Shape &psi, Shape &test) const
	Pressure shape and test functions. More...

Public Member Functions inherited from oomph::TBubbleEnrichedElement< DIM, 3 >
	TBubbleEnrichedElement ()
	Constructor. More...

	TBubbleEnrichedElement (const TBubbleEnrichedElement &)=delete
	Broken copy constructor. More...

	~TBubbleEnrichedElement ()
	Broken assignment operator. More...

void	shape (const Vector< double > &s, Shape &psi) const
	Calculate the geometric shape functions at local coordinate s. More...

void	dshape_local (const Vector< double > &s, Shape &psi, DShape &dpsids) const

void	d2shape_local (const Vector< double > &s, Shape &psi, DShape &dpsids, DShape &d2psids) const

void	local_coordinate_of_node (const unsigned &j, Vector< double > &s) const
	Return local coordinates of node j. More...

void	build_face_element (const int &face_index, FaceElement *face_element_pt)
	Build the lower-dimensional FaceElement. More...

Public Member Functions inherited from oomph::TElement< DIM, 3 >
const unsigned	Node_on_face [3][2]
	Assign the nodal translation schemes. More...

const unsigned	Node_on_face [3][3]

const unsigned	Node_on_face [3][4]

const unsigned	Node_on_face [4][3]
	Assign the nodal translation scheme for linear elements. More...

const unsigned	Node_on_face [4][6]
	Assign the nodal translation scheme for quadratic elements. More...

Public Member Functions inherited from oomph::NavierStokesEquations< DIM >
	NavierStokesEquations ()

const double &	re () const
	Reynolds number. More...

const double &	re_st () const
	Product of Reynolds and Strouhal number (=Womersley number) More...

double *&	re_pt ()
	Pointer to Reynolds number. More...

double *&	re_st_pt ()
	Pointer to product of Reynolds and Strouhal number (=Womersley number) More...

const double &	viscosity_ratio () const

double *&	viscosity_ratio_pt ()
	Pointer to Viscosity Ratio. More...

const double &	density_ratio () const

double *&	density_ratio_pt ()
	Pointer to Density ratio. More...

const double &	re_invfr () const
	Global inverse Froude number. More...

double *&	re_invfr_pt ()
	Pointer to global inverse Froude number. More...

const Vector< double > &	g () const
	Vector of gravitational components. More...

Vector< double > *&	g_pt ()
	Pointer to Vector of gravitational components. More...

NavierStokesBodyForceFctPt &	body_force_fct_pt ()
	Access function for the body-force pointer. More...

NavierStokesBodyForceFctPt	body_force_fct_pt () const
	Access function for the body-force pointer. Const version. More...

NavierStokesSourceFctPt &	source_fct_pt ()
	Access function for the source-function pointer. More...

NavierStokesSourceFctPt	source_fct_pt () const
	Access function for the source-function pointer. Const version. More...

NavierStokesPressureAdvDiffSourceFctPt &	source_fct_for_pressure_adv_diff ()

NavierStokesPressureAdvDiffSourceFctPt	source_fct_for_pressure_adv_diff () const

int &	pinned_fp_pressure_eqn ()

double	u_nst (const unsigned &n, const unsigned &i) const

double	u_nst (const unsigned &t, const unsigned &n, const unsigned &i) const

virtual unsigned	u_index_nst (const unsigned &i) const

unsigned	n_u_nst () const

double	du_dt_nst (const unsigned &n, const unsigned &i) const

void	disable_ALE ()

void	enable_ALE ()

virtual int	p_nodal_index_nst () const

double	pressure_integral () const
	Integral of pressure over element. More...

double	dissipation () const
	Return integral of dissipation over element. More...

double	dissipation (const Vector< double > &s) const
	Return dissipation at local coordinate s. More...

void	get_vorticity (const Vector< double > &s, Vector< double > &vorticity) const
	Compute the vorticity vector at local coordinate s. More...

void	get_vorticity (const Vector< double > &s, double &vorticity) const
	Compute the scalar vorticity at local coordinate s (2D) More...

double	kin_energy () const
	Get integral of kinetic energy over element. More...

double	d_kin_energy_dt () const
	Get integral of time derivative of kinetic energy over element. More...

void	strain_rate (const Vector< double > &s, DenseMatrix< double > &strain_rate) const
	Strain-rate tensor: 1/2 (du_i/dx_j + du_j/dx_i) More...

void	get_traction (const Vector< double > &s, const Vector< double > &N, Vector< double > &traction)

void	get_traction (const Vector< double > &s, const Vector< double > &N, Vector< double > &traction_p, Vector< double > &traction_visc_n, Vector< double > &traction_visc_t)

void	get_load (const Vector< double > &s, const Vector< double > &N, Vector< double > &load)

void	get_pressure_and_velocity_mass_matrix_diagonal (Vector< double > &press_mass_diag, Vector< double > &veloc_mass_diag, const unsigned &which_one=0)

unsigned	nscalar_paraview () const

void	scalar_value_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot) const

void	scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const

std::string	scalar_name_paraview (const unsigned &i) const

void	full_output (std::ostream &outfile)

void	full_output (std::ostream &outfile, const unsigned &nplot)

void	output_veloc (std::ostream &outfile, const unsigned &nplot, const unsigned &t)

void	output_vorticity (std::ostream &outfile, const unsigned &nplot)

void	output_fct (std::ostream &outfile, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt)

void	output_fct (std::ostream &outfile, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt)

void	compute_norm (Vector< double > &norm)
	Compute the vector norm of the FEM solution. More...

void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)

void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)

void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)

void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)

void	fill_in_contribution_to_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)
	Compute the element's residual Vector. More...

void	fill_in_contribution_to_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)

void	fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)

void	fill_in_pressure_advection_diffusion_residuals (Vector< double > &residuals)

void	fill_in_pressure_advection_diffusion_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	pin_all_non_pressure_dofs (std::map< Data *, std::vector< int >> &eqn_number_backup)
	Pin all non-pressure dofs and backup eqn numbers. More...

void	output_pressure_advection_diffusion_robin_elements (std::ostream &outfile)

void	delete_pressure_advection_diffusion_robin_elements ()

virtual void	get_dresidual_dnodal_coordinates (RankThreeTensor< double > &dresidual_dnodal_coordinates)

void	interpolated_u_nst (const Vector< double > &s, Vector< double > &veloc) const
	Compute vector of FE interpolated velocity u at local coordinate s. More...

double	interpolated_u_nst (const Vector< double > &s, const unsigned &i) const
	Return FE interpolated velocity u[i] at local coordinate s. More...

double	interpolated_u_nst (const unsigned &t, const Vector< double > &s, const unsigned &i) const

virtual void	dinterpolated_u_nst_ddata (const Vector< double > &s, const unsigned &i, Vector< double > &du_ddata, Vector< unsigned > &global_eqn_number)

virtual double	interpolated_p_nst (const Vector< double > &s) const
	Return FE interpolated pressure at local coordinate s. More...

double	interpolated_p_nst (const unsigned &t, const Vector< double > &s) const
	Return FE interpolated pressure at local coordinate s at time level t. More...

double	interpolated_dudx_nst (const Vector< double > &s, const unsigned &i, const unsigned &j) const

void	point_output_data (const Vector< double > &s, Vector< double > &data)

void	get_vorticity (const Vector< double > &s, Vector< double > &vorticity) const

void	get_vorticity (const Vector< double > &s, double &vorticity) const

void	get_vorticity (const Vector< double > &s, Vector< double > &vorticity) const
	Compute 3D vorticity vector at local coordinate s. More...

Public Member Functions inherited from oomph::FSIFluidElement
	FSIFluidElement ()
	Constructor. More...

	FSIFluidElement (const FSIFluidElement &)=delete
	Broken copy constructor. More...

void	operator= (const FSIFluidElement &)=delete
	Broken assignment operator. More...

Public Member Functions inherited from oomph::FiniteElement
void	set_dimension (const unsigned &dim)

void	set_nodal_dimension (const unsigned &nodal_dim)

void	set_nnodal_position_type (const unsigned &nposition_type)
	Set the number of types required to interpolate the coordinate. More...

void	set_n_node (const unsigned &n)

int	nodal_local_eqn (const unsigned &n, const unsigned &i) const

double	dJ_eulerian_at_knot (const unsigned &ipt, Shape &psi, DenseMatrix< double > &djacobian_dX) const

	FiniteElement ()
	Constructor. More...

virtual	~FiniteElement ()

	FiniteElement (const FiniteElement &)=delete
	Broken copy constructor. More...

virtual bool	local_coord_is_valid (const Vector< double > &s)
	Broken assignment operator. More...

virtual void	move_local_coord_back_into_element (Vector< double > &s) const

void	get_centre_of_gravity_and_max_radius_in_terms_of_zeta (Vector< double > &cog, double &max_radius) const

virtual void	local_coordinate_of_node (const unsigned &j, Vector< double > &s) const

virtual void	local_fraction_of_node (const unsigned &j, Vector< double > &s_fraction)

virtual double	local_one_d_fraction_of_node (const unsigned &n1d, const unsigned &i)

MacroElement *	macro_elem_pt ()
	Access function to pointer to macro element. More...

void	get_x (const Vector< double > &s, Vector< double > &x) const

void	get_x (const unsigned &t, const Vector< double > &s, Vector< double > &x)

virtual void	get_x_from_macro_element (const Vector< double > &s, Vector< double > &x) const

virtual void	get_x_from_macro_element (const unsigned &t, const Vector< double > &s, Vector< double > &x)

virtual void	set_integration_scheme (Integral *const &integral_pt)
	Set the spatial integration scheme. More...

Integral *const &	integral_pt () const
	Return the pointer to the integration scheme (const version) More...

virtual void	shape (const Vector< double > &s, Shape &psi) const =0

virtual void	shape_at_knot (const unsigned &ipt, Shape &psi) const

virtual void	dshape_local (const Vector< double > &s, Shape &psi, DShape &dpsids) const

virtual void	dshape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids) const

virtual void	d2shape_local (const Vector< double > &s, Shape &psi, DShape &dpsids, DShape &d2psids) const

virtual void	d2shape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids, DShape &d2psids) const

virtual double	J_eulerian (const Vector< double > &s) const

virtual double	J_eulerian_at_knot (const unsigned &ipt) const

void	check_J_eulerian_at_knots (bool &passed) const

void	check_jacobian (const double &jacobian) const

double	dshape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx) const

virtual double	dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx) const

virtual double	dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsi, DenseMatrix< double > &djacobian_dX, RankFourTensor< double > &d_dpsidx_dX) const

double	d2shape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx, DShape &d2psidx) const

virtual double	d2shape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, DShape &d2psidx) const

virtual void	assign_nodal_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	describe_nodal_local_dofs (std::ostream &out, const std::string &current_string) const

Node *&	node_pt (const unsigned &n)
	Return a pointer to the local node n. More...

Node *const &	node_pt (const unsigned &n) const
	Return a pointer to the local node n (const version) More...

unsigned	nnode () const
	Return the number of nodes. More...

virtual unsigned	nnode_1d () const

double	raw_nodal_position (const unsigned &n, const unsigned &i) const

double	raw_nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const

double	raw_dnodal_position_dt (const unsigned &n, const unsigned &i) const

double	raw_dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const

double	raw_nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const

double	nodal_position (const unsigned &n, const unsigned &i) const

double	nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const

double	dnodal_position_dt (const unsigned &n, const unsigned &i) const
	Return the i-th component of nodal velocity: dx/dt at local node n. More...

double	dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const

double	nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const

double	dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const

double	dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const

unsigned	nnodal_position_type () const

bool	has_hanging_nodes () const

unsigned	nodal_dimension () const
	Return the required Eulerian dimension of the nodes in this element. More...

int	get_node_number (Node *const &node_pt) const

virtual Node *	get_node_at_local_coordinate (const Vector< double > &s) const

double	raw_nodal_value (const unsigned &n, const unsigned &i) const

double	raw_nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const

double	nodal_value (const unsigned &n, const unsigned &i) const

double	nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const

unsigned	dim () const

virtual ElementGeometry::ElementGeometry	element_geometry () const
	Return the geometry type of the element (either Q or T usually). More...

virtual double	interpolated_x (const Vector< double > &s, const unsigned &i) const
	Return FE interpolated coordinate x[i] at local coordinate s. More...

virtual double	interpolated_x (const unsigned &t, const Vector< double > &s, const unsigned &i) const

virtual void	interpolated_x (const Vector< double > &s, Vector< double > &x) const
	Return FE interpolated position x[] at local coordinate s as Vector. More...

virtual void	interpolated_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) const

virtual double	interpolated_dxdt (const Vector< double > &s, const unsigned &i, const unsigned &t)

virtual void	interpolated_dxdt (const Vector< double > &s, const unsigned &t, Vector< double > &dxdt)

void	position (const Vector< double > &zeta, Vector< double > &r) const

void	position (const unsigned &t, const Vector< double > &zeta, Vector< double > &r) const

void	dposition_dt (const Vector< double > &zeta, const unsigned &t, Vector< double > &drdt)

void	interpolated_zeta (const Vector< double > &s, Vector< double > &zeta) const

void	locate_zeta (const Vector< double > &zeta, GeomObject *&geom_object_pt, Vector< double > &s, const bool &use_coordinate_as_initial_guess=false)

virtual void	node_update ()

virtual void	identify_field_data_for_interactions (std::set< std::pair< Data *, unsigned >> &paired_field_data)

virtual double	s_min () const
	Min value of local coordinate. More...

virtual double	s_max () const
	Max. value of local coordinate. More...

double	size () const

virtual double	compute_physical_size () const

void	point_output (std::ostream &outfile, const Vector< double > &s)

virtual unsigned	nplot_points_paraview (const unsigned &nplot) const

virtual unsigned	nsub_elements_paraview (const unsigned &nplot) const

void	output_paraview (std::ofstream &file_out, const unsigned &nplot) const

virtual void	write_paraview_output_offset_information (std::ofstream &file_out, const unsigned &nplot, unsigned &counter) const

virtual void	write_paraview_type (std::ofstream &file_out, const unsigned &nplot) const

virtual void	write_paraview_offsets (std::ofstream &file_out, const unsigned &nplot, unsigned &offset_sum) const

virtual void	scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const

virtual void	output (const unsigned &t, std::ostream &outfile, const unsigned &n_plot) const

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, const SolutionFunctorBase &exact_soln) const
	Output a time-dependent exact solution over the element. More...

virtual void	get_s_plot (const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const

virtual std::string	tecplot_zone_string (const unsigned &nplot) const

virtual void	write_tecplot_zone_footer (std::ostream &outfile, const unsigned &nplot) const

virtual void	write_tecplot_zone_footer (FILE *file_pt, const unsigned &nplot) const

virtual unsigned	nplot_points (const unsigned &nplot) const

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_abs_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error)

void	integrate_fct (FiniteElement::SteadyExactSolutionFctPt integrand_fct_pt, Vector< double > &integral)
	Integrate Vector-valued function over element. More...

void	integrate_fct (FiniteElement::UnsteadyExactSolutionFctPt integrand_fct_pt, const double &time, Vector< double > &integral)
	Integrate Vector-valued time-dep function over element. More...

virtual void	build_face_element (const int &face_index, FaceElement *face_element_pt)

virtual unsigned	self_test ()

virtual unsigned	get_bulk_node_number (const int &face_index, const unsigned &i) const

virtual int	face_outer_unit_normal_sign (const int &face_index) const
	Get the sign of the outer unit normal on the face given by face_index. More...

virtual unsigned	nnode_on_face () const

void	face_node_number_error_check (const unsigned &i) const
	Range check for face node numbers. More...

virtual CoordinateMappingFctPt	face_to_bulk_coordinate_fct_pt (const int &face_index) const

virtual BulkCoordinateDerivativesFctPt	bulk_coordinate_derivatives_fct_pt (const int &face_index) const

Public Member Functions inherited from oomph::GeneralisedElement
	GeneralisedElement ()
	Constructor: Initialise all pointers and all values to zero. More...

virtual	~GeneralisedElement ()
	Virtual destructor to clean up any memory allocated by the object. More...

	GeneralisedElement (const GeneralisedElement &)=delete
	Broken copy constructor. More...

void	operator= (const GeneralisedElement &)=delete
	Broken assignment operator. More...

Data *&	internal_data_pt (const unsigned &i)
	Return a pointer to i-th internal data object. More...

Data *const &	internal_data_pt (const unsigned &i) const
	Return a pointer to i-th internal data object (const version) More...

Data *&	external_data_pt (const unsigned &i)
	Return a pointer to i-th external data object. More...

Data *const &	external_data_pt (const unsigned &i) const
	Return a pointer to i-th external data object (const version) More...

unsigned long	eqn_number (const unsigned &ieqn_local) const

int	local_eqn_number (const unsigned long &ieqn_global) const

unsigned	add_external_data (Data *const &data_pt, const bool &fd=true)

bool	external_data_fd (const unsigned &i) const

void	exclude_external_data_fd (const unsigned &i)

void	include_external_data_fd (const unsigned &i)

void	flush_external_data ()
	Flush all external data. More...

void	flush_external_data (Data *const &data_pt)
	Flush the object addressed by data_pt from the external data array. More...

unsigned	ninternal_data () const
	Return the number of internal data objects. More...

unsigned	nexternal_data () const
	Return the number of external data objects. More...

unsigned	ndof () const
	Return the number of equations/dofs in the element. More...

void	dof_vector (const unsigned &t, Vector< double > &dof)
	Return the vector of dof values at time level t. More...

void	dof_pt_vector (Vector< double * > &dof_pt)
	Return the vector of pointers to dof values. More...

void	set_internal_data_time_stepper (const unsigned &i, TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

void	assign_internal_eqn_numbers (unsigned long &global_number, Vector< double * > &Dof_pt)

void	describe_dofs (std::ostream &out, const std::string &current_string) const

void	add_internal_value_pt_to_map (std::map< unsigned, double * > &map_of_value_pt)

virtual void	assign_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	complete_setup_of_dependencies ()

virtual void	get_residuals (Vector< double > &residuals)

virtual void	get_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)

virtual void	get_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)

virtual void	get_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)

virtual void	get_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)

virtual void	get_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)

virtual void	get_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)

virtual void	get_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)

virtual void	get_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)

virtual void	get_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)

Public Member Functions inherited from oomph::GeomObject
	GeomObject ()
	Default constructor. More...

	GeomObject (const unsigned &ndim)

	GeomObject (const unsigned &nlagrangian, const unsigned &ndim)

	GeomObject (const unsigned &nlagrangian, const unsigned &ndim, TimeStepper *time_stepper_pt)

	GeomObject (const GeomObject &dummy)=delete
	Broken copy constructor. More...

void	operator= (const GeomObject &)=delete
	Broken assignment operator. More...

virtual	~GeomObject ()
	(Empty) destructor More...

unsigned	nlagrangian () const
	Access function to # of Lagrangian coordinates. More...

unsigned	ndim () const
	Access function to # of Eulerian coordinates. More...

void	set_nlagrangian_and_ndim (const unsigned &n_lagrangian, const unsigned &n_dim)
	Set # of Lagrangian and Eulerian coordinates. More...

TimeStepper *&	time_stepper_pt ()

TimeStepper *	time_stepper_pt () const

virtual void	position (const double &t, const Vector< double > &zeta, Vector< double > &r) const

virtual void	dposition (const Vector< double > &zeta, DenseMatrix< double > &drdzeta) const

virtual void	d2position (const Vector< double > &zeta, RankThreeTensor< double > &ddrdzeta) const

virtual void	d2position (const Vector< double > &zeta, Vector< double > &r, DenseMatrix< double > &drdzeta, RankThreeTensor< double > &ddrdzeta) const

Public Member Functions inherited from oomph::TemplateFreeNavierStokesEquationsBase
	TemplateFreeNavierStokesEquationsBase ()
	Constructor (empty) More...

virtual	~TemplateFreeNavierStokesEquationsBase ()
	Virtual destructor (empty) More...

Public Member Functions inherited from oomph::NavierStokesElementWithDiagonalMassMatrices
	NavierStokesElementWithDiagonalMassMatrices ()
	Empty constructor. More...

virtual	~NavierStokesElementWithDiagonalMassMatrices ()
	Virtual destructor. More...

	NavierStokesElementWithDiagonalMassMatrices (const NavierStokesElementWithDiagonalMassMatrices &)=delete
	Broken copy constructor. More...

void	operator= (const NavierStokesElementWithDiagonalMassMatrices &)=delete
	Broken assignment operator. More...

Public Member Functions inherited from oomph::ElementWithZ2ErrorEstimator
	ElementWithZ2ErrorEstimator ()
	Default empty constructor. More...

	ElementWithZ2ErrorEstimator (const ElementWithZ2ErrorEstimator &)=delete
	Broken copy constructor. More...

void	operator= (const ElementWithZ2ErrorEstimator &)=delete
	Broken assignment operator. More...

virtual unsigned	ncompound_fluxes ()

virtual void	get_Z2_compound_flux_indices (Vector< unsigned > &flux_index)

virtual double	geometric_jacobian (const Vector< double > &x)

Public Member Functions inherited from oomph::TPVDBubbleEnrichedElement< DIM, NNODE_1D >
	TPVDBubbleEnrichedElement ()
	Constructor, there are no internal data points. More...

Public Member Functions inherited from oomph::SolidTBubbleEnrichedElement< DIM, NNODE_1D >
void	build_face_element (const int &face_index, FaceElement *face_element_pt)

void	build_face_element (const int &face_index, FaceElement *face_element_pt)

Public Member Functions inherited from oomph::PVDEquations< DIM >
	PVDEquations ()
	Constructor. More...

void	get_stress (const Vector< double > &s, DenseMatrix< double > &sigma)

void	extended_output (std::ostream &outfile, const unsigned &n_plot)
	Output: x,y,[z],xi0,xi1,[xi2],gamma strain and stress components. More...

Public Member Functions inherited from oomph::PVDEquationsBase< DIM >
	PVDEquationsBase ()

ConstitutiveLaw *&	constitutive_law_pt ()
	Return the constitutive law pointer. More...

const double &	lambda_sq () const
	Access function for timescale ratio (nondim density) More...

double *&	lambda_sq_pt ()
	Access function for pointer to timescale ratio (nondim density) More...

IsotropicGrowthFctPt &	isotropic_growth_fct_pt ()
	Access function: Pointer to isotropic growth function. More...

PrestressFctPt &	prestress_fct_pt ()
	Access function: Pointer to pre-stress function. More...

IsotropicGrowthFctPt	isotropic_growth_fct_pt () const
	Access function: Pointer to isotropic growth function (const version) More...

BodyForceFctPt &	body_force_fct_pt ()
	Access function: Pointer to body force function. More...

BodyForceFctPt	body_force_fct_pt () const
	Access function: Pointer to body force function (const version) More...

void	enable_inertia ()
	Switch on solid inertia. More...

void	disable_inertia ()
	Switch off solid inertia. More...

bool	is_inertia_enabled () const
	Access function to flag that switches inertia on/off (const version) More...

virtual unsigned	npres_solid () const

virtual int	solid_p_local_eqn (const unsigned &i) const

virtual void	pin_elemental_redundant_nodal_solid_pressures ()
	Pin the element's redundant solid pressures (needed for refinement) More...

void	get_strain (const Vector< double > &s, DenseMatrix< double > &strain) const
	Return the strain tensor. More...

void	get_energy (double &pot_en, double &kin_en)
	Get potential (strain) and kinetic energy. More...

void	get_deformed_covariant_basis_vectors (const Vector< double > &s, DenseMatrix< double > &def_covariant_basis)

void	get_principal_stress (const Vector< double > &s, DenseMatrix< double > &principal_stress_vector, Vector< double > &principal_stress)

virtual void	get_isotropic_growth (const unsigned &ipt, const Vector< double > &s, const Vector< double > &xi, double &gamma) const

void	body_force (const Vector< double > &xi, Vector< double > &b) const

void	enable_evaluate_jacobian_by_fd ()
	Set Jacobian to be evaluated by FD? Else: Analytically. More...

void	disable_evaluate_jacobian_by_fd ()
	Set Jacobian to be evaluated analytically Else: by FD. More...

bool	is_jacobian_evaluated_by_fd () const
	Return the flag indicating whether the jacobian is evaluated by fd. More...

double	prestress (const unsigned &i, const unsigned &j, const Vector< double > xi)

Public Member Functions inherited from oomph::SolidFiniteElement
void	set_lagrangian_dimension (const unsigned &lagrangian_dimension)

virtual bool	has_internal_solid_data ()

	SolidFiniteElement ()
	Constructor: Set defaults. More...

virtual	~SolidFiniteElement ()
	Destructor to clean up any allocated memory. More...

	SolidFiniteElement (const SolidFiniteElement &)=delete
	Broken copy constructor. More...

unsigned	ngeom_data () const
	Broken assignment operator. More...

Data *	geom_data_pt (const unsigned &j)

double	zeta_nodal (const unsigned &n, const unsigned &k, const unsigned &i) const

virtual void	get_x_and_xi (const Vector< double > &s, Vector< double > &x_fe, Vector< double > &x, Vector< double > &xi_fe, Vector< double > &xi) const

virtual void	set_macro_elem_pt (MacroElement *macro_elem_pt)

virtual void	set_macro_elem_pt (MacroElement macro_elem_pt, MacroElement undeformed_macro_elem_pt)

void	set_undeformed_macro_elem_pt (MacroElement *undeformed_macro_elem_pt)

MacroElement *	undeformed_macro_elem_pt ()
	Access function to pointer to "undeformed" macro element. More...

double	dshape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi) const

virtual double	dshape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi) const

double	d2shape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const

virtual double	d2shape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const

unsigned	lagrangian_dimension () const

unsigned	nnodal_lagrangian_type () const

Node *	construct_node (const unsigned &n)
	Construct the local node n and return a pointer to it. More...

Node *	construct_node (const unsigned &n, TimeStepper *const &time_stepper_pt)

Node *	construct_boundary_node (const unsigned &n)

Node *	construct_boundary_node (const unsigned &n, TimeStepper *const &time_stepper_pt)

virtual void	assign_all_generic_local_eqn_numbers (const bool &store_local_dof_pt)

double	raw_lagrangian_position (const unsigned &n, const unsigned &i) const

double	raw_lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	lagrangian_position (const unsigned &n, const unsigned &i) const
	Return i-th Lagrangian coordinate at local node n. More...

double	lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

virtual double	interpolated_xi (const Vector< double > &s, const unsigned &i) const

virtual void	interpolated_xi (const Vector< double > &s, Vector< double > &xi) const

virtual void	interpolated_dxids (const Vector< double > &s, DenseMatrix< double > &dxids) const

virtual void	J_lagrangian (const Vector< double > &s) const

virtual double	J_lagrangian_at_knot (const unsigned &ipt) const

SolidInitialCondition *&	solid_ic_pt ()
	Pointer to object that describes the initial condition. More...

void	enable_solve_for_consistent_newmark_accel ()

void	disable_solve_for_consistent_newmark_accel ()
	Set to reset the problem being solved to be the standard problem. More...

MultiplierFctPt &	multiplier_fct_pt ()

MultiplierFctPt	multiplier_fct_pt () const

virtual void	get_residuals_for_solid_ic (Vector< double > &residuals)

void	fill_in_residuals_for_solid_ic (Vector< double > &residuals)

void	fill_in_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_jacobian_for_newmark_accel (DenseMatrix< double > &jacobian)

int	position_local_eqn (const unsigned &n, const unsigned &k, const unsigned &j) const

Private Attributes
double	Error
	Storage for elemental error estimate – used for post-processing. More...

Additional Inherited Members
Public Types inherited from oomph::NavierStokesEquations< DIM >
typedef void(*	NavierStokesBodyForceFctPt) (const double &time, const Vector< double > &x, Vector< double > &body_force)

typedef double(*	NavierStokesSourceFctPt) (const double &time, const Vector< double > &x)

typedef double(*	NavierStokesPressureAdvDiffSourceFctPt) (const Vector< double > &x)

Public Types inherited from oomph::FiniteElement
typedef void(*	SteadyExactSolutionFctPt) (const Vector< double > &, Vector< double > &)

typedef void(*	UnsteadyExactSolutionFctPt) (const double &, const Vector< double > &, Vector< double > &)

Public Types inherited from oomph::PVDEquationsBase< DIM >
typedef void(*	IsotropicGrowthFctPt) (const Vector< double > &xi, double &gamma)

typedef double(*	PrestressFctPt) (const unsigned &i, const unsigned &j, const Vector< double > &xi)

typedef void(*	BodyForceFctPt) (const double &t, const Vector< double > &xi, Vector< double > &b)

Public Types inherited from oomph::SolidFiniteElement
typedef double(*	MultiplierFctPt) (const Vector< double > &xi)

Static Public Member Functions inherited from oomph::PVDEquationsBase< DIM >
static void	pin_redundant_nodal_solid_pressures (const Vector< GeneralisedElement * > &element_pt)

static void	unpin_all_solid_pressure_dofs (const Vector< GeneralisedElement * > &element_pt)
	Unpin all pressure dofs in elements listed in vector. More...

Static Public Attributes inherited from oomph::NavierStokesEquations< DIM >
static Vector< double >	Gamma
	Vector to decide whether the stress-divergence form is used or not. More...

Static Public Attributes inherited from oomph::FiniteElement
static double	Tolerance_for_singular_jacobian = 1.0e-16
	Tolerance below which the jacobian is considered singular. More...

static bool	Accept_negative_jacobian = false

static bool	Suppress_output_while_checking_for_inverted_elements

Static Public Attributes inherited from oomph::GeneralisedElement
static bool	Suppress_warning_about_repeated_internal_data

static bool	Suppress_warning_about_repeated_external_data = true

static double	Default_fd_jacobian_step = 1.0e-8

Protected Member Functions inherited from oomph::TCrouzeixRaviartElement< DIM >
double	dshape_and_dtest_eulerian_nst (const Vector< double > &s, Shape &psi, DShape &dpsidx, Shape &test, DShape &dtestdx) const

double	dshape_and_dtest_eulerian_at_knot_nst (const unsigned &ipt, Shape &psi, DShape &dpsidx, Shape &test, DShape &dtestdx) const

double	dshape_and_dtest_eulerian_at_knot_nst (const unsigned &ipt, Shape &psi, DShape &dpsidx, RankFourTensor< double > &d_dpsidx_dX, Shape &test, DShape &dtestdx, RankFourTensor< double > &d_dtestdx_dX, DenseMatrix< double > &djacobian_dX) const

double	dpshape_and_dptest_eulerian_nst (const Vector< double > &s, Shape &ppsi, DShape &dppsidx, Shape &ptest, DShape &dptestdx) const

double	dpshape_and_dptest_eulerian_nst (const Vector< double > &s, Shape &ppsi, DShape &dppsidx, Shape &ptest, DShape &dptestdx) const

double	dpshape_and_dptest_eulerian_nst (const Vector< double > &s, Shape &ppsi, DShape &dppsidx, Shape &ptest, DShape &dptestdx) const

Protected Member Functions inherited from oomph::NavierStokesEquations< DIM >
virtual void	get_body_force_nst (const double &time, const unsigned &ipt, const Vector< double > &s, const Vector< double > &x, Vector< double > &result)

virtual void	get_body_force_gradient_nst (const double &time, const unsigned &ipt, const Vector< double > &s, const Vector< double > &x, DenseMatrix< double > &d_body_force_dx)

virtual double	get_source_nst (const double &time, const unsigned &ipt, const Vector< double > &x)

virtual void	get_source_gradient_nst (const double &time, const unsigned &ipt, const Vector< double > &x, Vector< double > &gradient)

virtual void	fill_in_generic_residual_contribution_nst (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix, unsigned flag)

virtual void	fill_in_generic_pressure_advection_diffusion_contribution_nst (Vector< double > &residuals, DenseMatrix< double > &jacobian, unsigned flag)

virtual void	fill_in_generic_dresidual_contribution_nst (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam, unsigned flag)

void	fill_in_contribution_to_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)

Protected Member Functions inherited from oomph::FiniteElement
virtual void	assemble_local_to_eulerian_jacobian (const DShape &dpsids, DenseMatrix< double > &jacobian) const

virtual void	assemble_local_to_eulerian_jacobian2 (const DShape &d2psids, DenseMatrix< double > &jacobian2) const

virtual void	assemble_eulerian_base_vectors (const DShape &dpsids, DenseMatrix< double > &interpolated_G) const

template<unsigned DIM>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual double	invert_jacobian_mapping (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual double	local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

double	local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const

virtual double	local_to_eulerian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual void	dJ_eulerian_dnodal_coordinates (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<unsigned DIM>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

virtual void	d_dshape_eulerian_dnodal_coordinates (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<unsigned DIM>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

virtual void	transform_derivatives (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const

void	transform_derivatives_diagonal (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const

virtual void	transform_second_derivatives (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<unsigned DIM>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<unsigned DIM>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

virtual void	fill_in_jacobian_from_nodal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_jacobian_from_nodal_by_fd (DenseMatrix< double > &jacobian)

virtual void	update_before_nodal_fd ()

virtual void	reset_after_nodal_fd ()

virtual void	update_in_nodal_fd (const unsigned &i)

virtual void	reset_in_nodal_fd (const unsigned &i)

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	Zero-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	One-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	Two-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

Protected Member Functions inherited from oomph::GeneralisedElement
unsigned	add_internal_data (Data *const &data_pt, const bool &fd=true)

bool	internal_data_fd (const unsigned &i) const

void	exclude_internal_data_fd (const unsigned &i)

void	include_internal_data_fd (const unsigned &i)

void	clear_global_eqn_numbers ()

void	add_global_eqn_numbers (std::deque< unsigned long > const &global_eqn_numbers, std::deque< double * > const &global_dof_pt)

virtual void	assign_internal_and_external_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	assign_additional_local_eqn_numbers ()

int	internal_local_eqn (const unsigned &i, const unsigned &j) const

int	external_local_eqn (const unsigned &i, const unsigned &j)

void	fill_in_jacobian_from_internal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_internal_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_external_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_external_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

virtual void	update_before_internal_fd ()

virtual void	reset_after_internal_fd ()

virtual void	update_in_internal_fd (const unsigned &i)

virtual void	reset_in_internal_fd (const unsigned &i)

virtual void	update_before_external_fd ()

virtual void	reset_after_external_fd ()

virtual void	update_in_external_fd (const unsigned &i)

virtual void	reset_in_external_fd (const unsigned &i)

virtual void	fill_in_contribution_to_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)

virtual void	fill_in_contribution_to_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)

virtual void	fill_in_contribution_to_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)

Protected Member Functions inherited from oomph::PVDEquations< DIM >
virtual void	fill_in_generic_contribution_to_residuals_pvd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)

void	get_stress (const DenseMatrix< double > &g, const DenseMatrix< double > &G, DenseMatrix< double > &sigma)

void	get_d_stress_dG_upper (const DenseMatrix< double > &g, const DenseMatrix< double > &G, const DenseMatrix< double > &sigma, RankFourTensor< double > &d_sigma_dG)

Protected Member Functions inherited from oomph::SolidFiniteElement
void	fill_in_generic_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)

void	set_nnodal_lagrangian_type (const unsigned &nlagrangian_type)

virtual double	local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

double	local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const

virtual double	local_to_lagrangian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual void	assign_solid_local_eqn_numbers (const bool &store_local_dof)
	Assign local equation numbers for the solid equations in the element. More...

void	describe_solid_local_dofs (std::ostream &out, const std::string &current_string) const
	Classifies dofs locally for solid specific aspects. More...

virtual void	fill_in_jacobian_from_solid_position_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_jacobian_from_solid_position_by_fd (DenseMatrix< double > &jacobian)

virtual void	update_before_solid_position_fd ()

virtual void	reset_after_solid_position_fd ()

virtual void	update_in_solid_position_fd (const unsigned &i)

virtual void	reset_in_solid_position_fd (const unsigned &i)

Protected Attributes inherited from oomph::TCrouzeixRaviartElement< DIM >
unsigned	P_nst_internal_index

Protected Attributes inherited from oomph::NavierStokesEquations< DIM >
double *	Viscosity_Ratio_pt

double *	Density_Ratio_pt

double *	Re_pt
	Pointer to global Reynolds number. More...

double *	ReSt_pt
	Pointer to global Reynolds number x Strouhal number (=Womersley) More...

double *	ReInvFr_pt

Vector< double > *	G_pt
	Pointer to global gravity Vector. More...

NavierStokesBodyForceFctPt	Body_force_fct_pt
	Pointer to body force function. More...

NavierStokesSourceFctPt	Source_fct_pt
	Pointer to volumetric source function. More...

NavierStokesPressureAdvDiffSourceFctPt	Press_adv_diff_source_fct_pt

bool	ALE_is_disabled

Vector< FpPressureAdvDiffRobinBCElementBase * >	Pressure_advection_diffusion_robin_element_pt

int	Pinned_fp_pressure_eqn

Protected Attributes inherited from oomph::FiniteElement
MacroElement *	Macro_elem_pt
	Pointer to the element's macro element (NULL by default) More...

Protected Attributes inherited from oomph::GeomObject
unsigned	NLagrangian
	Number of Lagrangian (intrinsic) coordinates. More...

unsigned	Ndim
	Number of Eulerian coordinates. More...

TimeStepper *	Geom_object_time_stepper_pt

Protected Attributes inherited from oomph::PVDEquationsBase< DIM >
IsotropicGrowthFctPt	Isotropic_growth_fct_pt
	Pointer to isotropic growth function. More...

PrestressFctPt	Prestress_fct_pt
	Pointer to prestress function. More...

ConstitutiveLaw *	Constitutive_law_pt
	Pointer to the constitutive law. More...

double *	Lambda_sq_pt
	Timescale ratio (non-dim. density) More...

bool	Unsteady
	Flag that switches inertia on/off. More...

BodyForceFctPt	Body_force_fct_pt
	Pointer to body force function. More...

bool	Evaluate_jacobian_by_fd
	Use FD to evaluate Jacobian. More...

Protected Attributes inherited from oomph::SolidFiniteElement
MacroElement *	Undeformed_macro_elem_pt
	Pointer to the element's "undeformed" macro element (NULL by default) More...

SolidInitialCondition *	Solid_ic_pt
	Pointer to object that specifies the initial condition. More...

bool	Solve_for_consistent_newmark_accel_flag

Static Protected Attributes inherited from oomph::FiniteElement
static const unsigned	Default_Initial_Nvalue = 0
	Default value for the number of values at a node. More...

static const double	Node_location_tolerance = 1.0e-14

static const unsigned	N2deriv [] = {0, 1, 3, 6}

Static Protected Attributes inherited from oomph::GeneralisedElement
static DenseMatrix< double >	Dummy_matrix

static std::deque< double * >	Dof_pt_deque

Static Protected Attributes inherited from oomph::PVDEquationsBase< DIM >
static double	Default_lambda_sq_value = 1.0
	Static default value for timescale ratio (1.0 – for natural scaling) More...

Detailed Description

Overload CrouzeixRaviart element to modify output.

Constructor & Destructor Documentation

◆ MyCrouzeixRaviartElement() [1/2]

oomph::MyCrouzeixRaviartElement::MyCrouzeixRaviartElement ( )

inline

Constructor initialise error.

                              : PseudoSolidNodeUpdateElement<TCrouzeixRaviartElement<2>, 
                                                             TPVDBubbleEnrichedElement<2,3> >()
    {
     Error=0.0;
    }

References Error.

◆ MyCrouzeixRaviartElement() [2/2]

oomph::MyCrouzeixRaviartElement::MyCrouzeixRaviartElement ( )

inline

Constructor initialise error.

                              : PseudoSolidNodeUpdateElement<TCrouzeixRaviartElement<2>, 
                                                             TPVDBubbleEnrichedElement<2,3> >()
    {
     Error=0.0;
    }

References Error.

Member Function Documentation

◆ output() [1/2]

void oomph::MyCrouzeixRaviartElement::output	(	std::ostream &	outfile,
		const unsigned &	nplot
	)

inlinevirtual

Overload output function.

Reimplemented from oomph::FiniteElement.

    {
     
     // Assign dimension 
     unsigned el_dim=2;
     
     // Vector of local coordinates
     Vector<double> s(el_dim);
     
     // Acceleration
     Vector<double> dudt(el_dim);
     
     // Mesh elocity
     Vector<double> mesh_veloc(el_dim,0.0);
    
     // Tecplot header info
     outfile << tecplot_zone_string(nplot);
    
     // Find out how many nodes there are
     unsigned n_node = nnode();
    
     //Set up memory for the shape functions
     Shape psif(n_node);
     DShape dpsifdx(n_node,el_dim);
    
     // Loop over plot points
     unsigned num_plot_points=nplot_points(nplot);
     for (unsigned iplot=0;iplot<num_plot_points;iplot++)
      {
      
       // Get local coordinates of plot point
       get_s_plot(iplot,nplot,s);
      
       //Call the derivatives of the shape and test functions
       dshape_eulerian(s,psif,dpsifdx);
      
       //Allocate storage
       Vector<double> mesh_veloc(el_dim);
       Vector<double> dudt(el_dim);
       Vector<double> dudt_ALE(el_dim);
       DenseMatrix<double> interpolated_dudx(el_dim,el_dim);
      
       //Initialise everything to zero
       for(unsigned i=0;i<el_dim;i++)
        {
         mesh_veloc[i]=0.0;
         dudt[i]=0.0;
         dudt_ALE[i]=0.0;
         for(unsigned j=0;j<el_dim;j++)
          {
           interpolated_dudx(i,j) = 0.0;
          }
        }
      
       //Calculate velocities and derivatives
  
       //Loop over directions
       for(unsigned i=0;i<el_dim;i++)
        {
         //Get the index at which velocity i is stored
         unsigned u_nodal_index = u_index_nst(i);
         // Loop over nodes
         for(unsigned l=0;l<n_node;l++) 
          {
           dudt[i]+=du_dt_nst(l,u_nodal_index)*psif[l];
           mesh_veloc[i]+=dnodal_position_dt(l,i)*psif[l];
           
           //Loop over derivative directions for velocity gradients
           for(unsigned j=0;j<el_dim;j++)
            {                               
             interpolated_dudx(i,j) += nodal_value(l,u_nodal_index)*
              dpsifdx(l,j);
            }
          }
        }
      
      
       // Get dudt in ALE form (incl mesh veloc)
       for(unsigned i=0;i<el_dim;i++)
        {
         dudt_ALE[i]=dudt[i];
         for (unsigned k=0;k<el_dim;k++)
          {
           dudt_ALE[i]-=mesh_veloc[k]*interpolated_dudx(i,k);
          }
        }
      
      
       // Coordinates
       for(unsigned i=0;i<el_dim;i++) 
        {
         outfile << interpolated_x(s,i) << " ";
        }
      
       // Velocities
       for(unsigned i=0;i<el_dim;i++) 
        {
         outfile << interpolated_u_nst(s,i) << " ";
        }
      
       // Pressure
       outfile << interpolated_p_nst(s)  << " ";
      
       // Accelerations
       for(unsigned i=0;i<el_dim;i++) 
        {
         outfile << dudt_ALE[i] << " ";
        }
      
       // Mesh velocity
       for(unsigned i=0;i<el_dim;i++) 
        {
         outfile << mesh_veloc[i] << " ";
        }
      
       // History values of coordinates
       unsigned n_prev=node_pt(0)->position_time_stepper_pt()->ntstorage();
       for (unsigned t=1;t<n_prev;t++)
        {
         for(unsigned i=0;i<el_dim;i++) 
          {
           outfile << interpolated_x(t,s,i) << " ";
          }
        }
      
       // History values of velocities
       n_prev=node_pt(0)->time_stepper_pt()->ntstorage();
       for (unsigned t=1;t<n_prev;t++)
        {
         for(unsigned i=0;i<el_dim;i++) 
          {
           outfile << interpolated_u_nst(t,s,i) << " ";
          }
        }
  
       outfile << Error << " " 
               << size() << std::endl;        
      }
     
     // Write tecplot footer (e.g. FE connectivity lists)
     write_tecplot_zone_footer(outfile,nplot); 
     }

References el_dim, Error, i, j, k, s, size, and plotPSD::t.

◆ output() [2/2]

void oomph::MyCrouzeixRaviartElement::output	(	std::ostream &	outfile,
		const unsigned &	nplot
	)

inlinevirtual

Overload output function.

Reimplemented from oomph::FiniteElement.

    {
     
     // Assign dimension 
     unsigned el_dim=2;
     
     // Vector of local coordinates
     Vector<double> s(el_dim);
     
     // Acceleration
     Vector<double> dudt(el_dim);
     
     // Mesh elocity
     Vector<double> mesh_veloc(el_dim,0.0);
    
     // Tecplot header info
     outfile << tecplot_zone_string(nplot);
    
     // Find out how many nodes there are
     unsigned n_node = nnode();
    
     //Set up memory for the shape functions
     Shape psif(n_node);
     DShape dpsifdx(n_node,el_dim);
    
     // Loop over plot points
     unsigned num_plot_points=nplot_points(nplot);
     for (unsigned iplot=0;iplot<num_plot_points;iplot++)
      {
      
       // Get local coordinates of plot point
       get_s_plot(iplot,nplot,s);
      
       //Call the derivatives of the shape and test functions
       dshape_eulerian(s,psif,dpsifdx);
      
       //Allocate storage
       Vector<double> mesh_veloc(el_dim);
       Vector<double> dudt(el_dim);
       Vector<double> dudt_ALE(el_dim);
       DenseMatrix<double> interpolated_dudx(el_dim,el_dim);
      
       //Initialise everything to zero
       for(unsigned i=0;i<el_dim;i++)
        {
         mesh_veloc[i]=0.0;
         dudt[i]=0.0;
         dudt_ALE[i]=0.0;
         for(unsigned j=0;j<el_dim;j++)
          {
           interpolated_dudx(i,j) = 0.0;
          }
        }
      
       //Calculate velocities and derivatives
  
       //Loop over directions
       for(unsigned i=0;i<el_dim;i++)
        {
         //Get the index at which velocity i is stored
         unsigned u_nodal_index = u_index_nst(i);
         // Loop over nodes
         for(unsigned l=0;l<n_node;l++) 
          {
           dudt[i]+=du_dt_nst(l,u_nodal_index)*psif[l];
           mesh_veloc[i]+=dnodal_position_dt(l,i)*psif[l];
           
           //Loop over derivative directions for velocity gradients
           for(unsigned j=0;j<el_dim;j++)
            {                               
             interpolated_dudx(i,j) += nodal_value(l,u_nodal_index)*
              dpsifdx(l,j);
            }
          }
        }
      
      
       // Get dudt in ALE form (incl mesh veloc)
       for(unsigned i=0;i<el_dim;i++)
        {
         dudt_ALE[i]=dudt[i];
         for (unsigned k=0;k<el_dim;k++)
          {
           dudt_ALE[i]-=mesh_veloc[k]*interpolated_dudx(i,k);
          }
        }
      
      
       // Coordinates
       for(unsigned i=0;i<el_dim;i++) 
        {
         outfile << interpolated_x(s,i) << " ";
        }
      
       // Velocities
       for(unsigned i=0;i<el_dim;i++) 
        {
         outfile << interpolated_u_nst(s,i) << " ";
        }
      
       // Pressure
       outfile << interpolated_p_nst(s)  << " ";
      
       // Accelerations
       for(unsigned i=0;i<el_dim;i++) 
        {
         outfile << dudt_ALE[i] << " ";
        }
      
       // Mesh velocity
       for(unsigned i=0;i<el_dim;i++) 
        {
         outfile << mesh_veloc[i] << " ";
        }
      
       // History values of coordinates
       unsigned n_prev=node_pt(0)->position_time_stepper_pt()->ntstorage();
       for (unsigned t=1;t<n_prev;t++)
        {
         for(unsigned i=0;i<el_dim;i++) 
          {
           outfile << interpolated_x(t,s,i) << " ";
          }
        }
      
       // History values of velocities
       n_prev=node_pt(0)->time_stepper_pt()->ntstorage();
       for (unsigned t=1;t<n_prev;t++)
        {
         for(unsigned i=0;i<el_dim;i++) 
          {
           outfile << interpolated_u_nst(t,s,i) << " ";
          }
        }
  
       outfile << Error << " " 
               << size() << std::endl;        
      }
     
     // Write tecplot footer (e.g. FE connectivity lists)
     write_tecplot_zone_footer(outfile,nplot); 
     }

References el_dim, Error, i, j, k, s, size, and plotPSD::t.

◆ set_error() [1/2]

void oomph::MyCrouzeixRaviartElement::set_error ( const double & error )

inline

Set error value for post-processing.

71 {Error=error;}

calibrate.error

int error

Definition: calibrate.py:297

References calibrate::error, and Error.

◆ set_error() [2/2]

void oomph::MyCrouzeixRaviartElement::set_error ( const double & error )

inline

Set error value for post-processing.

71 {Error=error;}

References calibrate::error, and Error.

◆ square_of_l2_norm()

double oomph::MyCrouzeixRaviartElement::square_of_l2_norm ( )

inline

Get square of L2 norm of velocity.

    {
  
     // Assign dimension 
     unsigned el_dim=2; 
     // Initalise
     double sum=0.0;
     
     //Find out how many nodes there are
     unsigned n_node = nnode();
     
     //Find the indices at which the local velocities are stored
     unsigned u_nodal_index[el_dim];
     for(unsigned i=0;i<el_dim;i++) {u_nodal_index[i] = u_index_nst(i);}
     
     //Set up memory for the velocity shape fcts
     Shape psif(n_node);
     DShape dpsidx(n_node,el_dim);
     
     //Number of integration points
     unsigned n_intpt = integral_pt()->nweight();
     
     //Set the Vector to hold local coordinates
     Vector<double> s(el_dim);
     
     //Loop over the integration points
     for(unsigned ipt=0;ipt<n_intpt;ipt++)
      {
       //Assign values of s
       for(unsigned i=0;i<el_dim;i++) s[i] = integral_pt()->knot(ipt,i);
       
       //Get the integral weight
       double w = integral_pt()->weight(ipt);
       
       // Call the derivatives of the veloc shape functions
       // (Derivs not needed but they are free)
       double J = this->dshape_eulerian_at_knot(ipt,psif,dpsidx);
       
       //Premultiply the weights and the Jacobian
       double W = w*J;
       
       //Calculate velocities 
       Vector<double> interpolated_u(el_dim,0.0);      
       
       // Loop over nodes
       for(unsigned l=0;l<n_node;l++) 
        {
         //Loop over directions
         for(unsigned i=0;i<el_dim;i++)
          {
           //Get the nodal value
           double u_value = raw_nodal_value(l,u_nodal_index[i]);
           interpolated_u[i] += u_value*psif[l];
          }
        }
  
       //Assemble square of L2 norm
       for(unsigned i=0;i<el_dim;i++)
        {
         sum+=interpolated_u[i]*interpolated_u[i]*W;
        }           
      }
  
     return sum;
  
    }

References el_dim, i, J, s, w, and oomph::QuadTreeNames::W.

◆ variable_identifier() [1/2]

std::string oomph::MyCrouzeixRaviartElement::variable_identifier ( )

inline

Return variable identifier.

    {
     std::string txt="VARIABLES=";
     txt+="\"x\",";
     txt+="\"y\",";
     txt+="\"u\",";
     txt+="\"v\",";
     txt+="\"p\",";   
     txt+="\"du/dt\",";
     txt+="\"dv/dt\",";
     txt+="\"u_m\",";   
     txt+="\"v_m\",";
     txt+="\"x_h1\",";
     txt+="\"y_h1\",";   
     txt+="\"x_h2\",";
     txt+="\"y_h2\",";   
     txt+="\"u_h1\",";
     txt+="\"v_h1\",";   
     txt+="\"u_h2\",";
     txt+="\"v_h2\",";   
     txt+="\"error\",";   
     txt+="\"size\",";   
     txt+="\n";
     return txt;
    }

References oomph::Global_string_for_annotation::string().

◆ variable_identifier() [2/2]

std::string oomph::MyCrouzeixRaviartElement::variable_identifier ( )

inline

Return variable identifier.

    {
     std::string txt="VARIABLES=";
     txt+="\"x\",";
     txt+="\"y\",";
     txt+="\"u\",";
     txt+="\"v\",";
     txt+="\"p\",";   
     txt+="\"du/dt\",";
     txt+="\"dv/dt\",";
     txt+="\"u_m\",";   
     txt+="\"v_m\",";
     txt+="\"x_h1\",";
     txt+="\"y_h1\",";   
     txt+="\"x_h2\",";
     txt+="\"y_h2\",";   
     txt+="\"u_h1\",";
     txt+="\"v_h1\",";   
     txt+="\"u_h2\",";
     txt+="\"v_h2\",";   
     txt+="\"error\",";   
     txt+="\"size\",";   
     txt+="\n";
     return txt;
    }

References oomph::Global_string_for_annotation::string().

Member Data Documentation

◆ Error

double oomph::MyCrouzeixRaviartElement::Error

private

Storage for elemental error estimate – used for post-processing.

The documentation for this class was generated from the following files:

Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ MyCrouzeixRaviartElement() [1/2]

◆ MyCrouzeixRaviartElement() [2/2]

Member Function Documentation

◆ output() [1/2]

◆ output() [2/2]

◆ set_error() [1/2]

◆ set_error() [2/2]

◆ square_of_l2_norm()

◆ variable_identifier() [1/2]

◆ variable_identifier() [2/2]

Member Data Documentation

◆ Error