Refineable version of Solid brick elements. More...

#include <refineable_brick_element.h>

Inheritance diagram for oomph::RefineableSolidQElement< 3 >:

Public Member Functions
	RefineableSolidQElement ()
	Constructor, just call the constructor of the RefineableQElement<2> More...

	RefineableSolidQElement (const RefineableSolidQElement< 3 > &dummy)=delete
	Broken copy constructor. More...

virtual	~RefineableSolidQElement ()
	Broken assignment operator. More...

void	set_macro_elem_pt (MacroElement *macro_elem_pt)
	Final over-ride: Use version in QSolidElementBase. More...

void	set_macro_elem_pt (MacroElement macro_elem_pt, MacroElement undeformed_macro_elem_pt)
	Final over-ride: Use version in QSolidElementBase. More...

void	get_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	get_face_solid_bcs (const int &edge, Vector< int > &solid_bound_cons) const

void	get_solid_bcs (int bound, Vector< int > &solid_bound_cons) const

void	build (Mesh &mesh_pt, Vector< Node > &new_node_pt, bool &was_already_built, std::ofstream &new_nodes_file)

Public Member Functions inherited from oomph::RefineableQElement< 3 >
	RefineableQElement ()
	Constructor: Pass refinement level (default 0 = root) More...

	RefineableQElement (const RefineableQElement< 3 > &dummy)=delete
	Broken copy constructor. More...

virtual	~RefineableQElement ()
	Broken assignment operator. More...

unsigned	required_nsons () const
	A refineable brick element has eight sons. More...

virtual Node *	node_created_by_neighbour (const Vector< double > &s_fraction, bool &is_periodic)

virtual Node *	node_created_by_son_of_neighbour (const Vector< double > &s_fraction, bool &is_periodic)

void	check_integrity (double &max_error)

void	output_corners (std::ostream &outfile, const std::string &colour) const
	Print corner nodes, use colour. More...

OcTree *	octree_pt ()
	Pointer to octree representation of this element. More...

OcTree *	octree_pt () const
	Pointer to octree representation of this element. More...

void	setup_hanging_nodes (Vector< std::ofstream * > &output_stream)

virtual void	further_setup_hanging_nodes ()=0

Public Member Functions inherited from oomph::RefineableElement
	RefineableElement ()

virtual	~RefineableElement ()
	Destructor, delete the allocated storage for the hanging equations. More...

	RefineableElement (const RefineableElement &)=delete
	Broken copy constructor. More...

void	operator= (const RefineableElement &)=delete
	Broken assignment operator. More...

Tree *	tree_pt ()
	Access function: Pointer to quadtree representation of this element. More...

void	set_tree_pt (Tree *my_tree_pt)
	Set pointer to quadtree representation of this element. More...

bool	refinement_is_enabled ()
	Flag to indicate suppression of any refinement. More...

void	disable_refinement ()
	Suppress of any refinement for this element. More...

void	enable_refinement ()
	Emnable refinement for this element. More...

template<class ELEMENT >
void	split (Vector< ELEMENT * > &son_pt) const

int	local_hang_eqn (Node *const &node_pt, const unsigned &i)

void	set_refinement_level (const int &refine_level)
	Set the refinement level. More...

unsigned	refinement_level () const
	Return the Refinement level. More...

void	select_for_refinement ()
	Select the element for refinement. More...

void	deselect_for_refinement ()
	Deselect the element for refinement. More...

void	select_sons_for_unrefinement ()
	Unrefinement will be performed by merging the four sons of this element. More...

void	deselect_sons_for_unrefinement ()

bool	to_be_refined ()
	Has the element been selected for refinement? More...

bool	sons_to_be_unrefined ()
	Has the element been selected for unrefinement? More...

virtual void	rebuild_from_sons (Mesh *&mesh_pt)=0

virtual void	unbuild ()

virtual void	deactivate_element ()

virtual bool	nodes_built ()
	Return true if all the nodes have been built, false if not. More...

long	number () const
	Element number (for debugging/plotting) More...

void	set_number (const long &mynumber)
	Set element number (for debugging/plotting) More...

virtual unsigned	ncont_interpolated_values () const =0

virtual void	get_interpolated_values (const Vector< double > &s, Vector< double > &values)

virtual void	get_interpolated_values (const unsigned &t, const Vector< double > &s, Vector< double > &values)=0

virtual Node *	interpolating_node_pt (const unsigned &n, const int &value_id)

virtual double	local_one_d_fraction_of_interpolating_node (const unsigned &n1d, const unsigned &i, const int &value_id)

virtual Node *	get_interpolating_node_at_local_coordinate (const Vector< double > &s, const int &value_id)

virtual unsigned	ninterpolating_node (const int &value_id)

virtual unsigned	ninterpolating_node_1d (const int &value_id)

virtual void	interpolating_basis (const Vector< double > &s, Shape &psi, const int &value_id) const

void	identify_field_data_for_interactions (std::set< std::pair< Data *, unsigned >> &paired_field_data)

void	assign_nodal_local_eqn_numbers (const bool &store_local_dof_pt)

virtual RefineableElement *	root_element_pt ()

virtual RefineableElement *	father_element_pt () const
	Return a pointer to the father element. More...

void	get_father_at_refinement_level (unsigned &refinement_level, RefineableElement *&father_at_reflevel_pt)

virtual void	initial_setup (Tree *const &adopted_father_pt=0, const unsigned &initial_p_order=0)

virtual void	pre_build (Mesh &mesh_pt, Vector< Node > &new_node_pt)
	Pre-build the element. More...

void	get_dresidual_dnodal_coordinates (RankThreeTensor< double > &dresidual_dnodal_coordinates)

unsigned	nshape_controlling_nodes ()

std::map< Node *, unsigned >	shape_controlling_node_lookup ()

Public Member Functions inherited from oomph::FiniteElement
void	set_dimension (const unsigned &dim)

void	set_nodal_dimension (const unsigned &nodal_dim)

void	set_nnodal_position_type (const unsigned &nposition_type)
	Set the number of types required to interpolate the coordinate. More...

void	set_n_node (const unsigned &n)

int	nodal_local_eqn (const unsigned &n, const unsigned &i) const

double	dJ_eulerian_at_knot (const unsigned &ipt, Shape &psi, DenseMatrix< double > &djacobian_dX) const

	FiniteElement ()
	Constructor. More...

virtual	~FiniteElement ()

	FiniteElement (const FiniteElement &)=delete
	Broken copy constructor. More...

void	get_centre_of_gravity_and_max_radius_in_terms_of_zeta (Vector< double > &cog, double &max_radius) const

virtual void	local_coordinate_of_node (const unsigned &j, Vector< double > &s) const

virtual void	local_fraction_of_node (const unsigned &j, Vector< double > &s_fraction)

virtual double	local_one_d_fraction_of_node (const unsigned &n1d, const unsigned &i)

MacroElement *	macro_elem_pt ()
	Access function to pointer to macro element. More...

void	get_x (const Vector< double > &s, Vector< double > &x) const

void	get_x (const unsigned &t, const Vector< double > &s, Vector< double > &x)

virtual void	set_integration_scheme (Integral *const &integral_pt)
	Set the spatial integration scheme. More...

Integral *const &	integral_pt () const
	Return the pointer to the integration scheme (const version) More...

virtual void	shape (const Vector< double > &s, Shape &psi) const =0

virtual void	shape_at_knot (const unsigned &ipt, Shape &psi) const

virtual void	dshape_local (const Vector< double > &s, Shape &psi, DShape &dpsids) const

virtual void	dshape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids) const

virtual void	d2shape_local (const Vector< double > &s, Shape &psi, DShape &dpsids, DShape &d2psids) const

virtual void	d2shape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids, DShape &d2psids) const

virtual double	J_eulerian (const Vector< double > &s) const

virtual double	J_eulerian_at_knot (const unsigned &ipt) const

void	check_J_eulerian_at_knots (bool &passed) const

void	check_jacobian (const double &jacobian) const

double	dshape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx) const

virtual double	dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx) const

virtual double	dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsi, DenseMatrix< double > &djacobian_dX, RankFourTensor< double > &d_dpsidx_dX) const

double	d2shape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx, DShape &d2psidx) const

virtual double	d2shape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, DShape &d2psidx) const

virtual void	describe_nodal_local_dofs (std::ostream &out, const std::string &current_string) const

Node *&	node_pt (const unsigned &n)
	Return a pointer to the local node n. More...

Node *const &	node_pt (const unsigned &n) const
	Return a pointer to the local node n (const version) More...

unsigned	nnode () const
	Return the number of nodes. More...

virtual unsigned	nnode_1d () const

double	raw_nodal_position (const unsigned &n, const unsigned &i) const

double	raw_nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const

double	raw_dnodal_position_dt (const unsigned &n, const unsigned &i) const

double	raw_dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const

double	raw_nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const

double	raw_dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const

double	nodal_position (const unsigned &n, const unsigned &i) const

double	nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const

double	dnodal_position_dt (const unsigned &n, const unsigned &i) const
	Return the i-th component of nodal velocity: dx/dt at local node n. More...

double	dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const

double	nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const

double	dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const

double	dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const

virtual void	disable_ALE ()

virtual void	enable_ALE ()

virtual unsigned	required_nvalue (const unsigned &n) const

unsigned	nnodal_position_type () const

bool	has_hanging_nodes () const

unsigned	nodal_dimension () const
	Return the required Eulerian dimension of the nodes in this element. More...

int	get_node_number (Node *const &node_pt) const

virtual Node *	get_node_at_local_coordinate (const Vector< double > &s) const

double	raw_nodal_value (const unsigned &n, const unsigned &i) const

double	raw_nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const

double	nodal_value (const unsigned &n, const unsigned &i) const

double	nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const

unsigned	dim () const

virtual double	interpolated_x (const Vector< double > &s, const unsigned &i) const
	Return FE interpolated coordinate x[i] at local coordinate s. More...

virtual double	interpolated_x (const unsigned &t, const Vector< double > &s, const unsigned &i) const

virtual void	interpolated_x (const Vector< double > &s, Vector< double > &x) const
	Return FE interpolated position x[] at local coordinate s as Vector. More...

virtual void	interpolated_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) const

virtual double	interpolated_dxdt (const Vector< double > &s, const unsigned &i, const unsigned &t)

virtual void	interpolated_dxdt (const Vector< double > &s, const unsigned &t, Vector< double > &dxdt)

void	position (const Vector< double > &zeta, Vector< double > &r) const

void	position (const unsigned &t, const Vector< double > &zeta, Vector< double > &r) const

void	dposition_dt (const Vector< double > &zeta, const unsigned &t, Vector< double > &drdt)

void	interpolated_zeta (const Vector< double > &s, Vector< double > &zeta) const

void	locate_zeta (const Vector< double > &zeta, GeomObject *&geom_object_pt, Vector< double > &s, const bool &use_coordinate_as_initial_guess=false)

virtual void	node_update ()

virtual double	s_min () const
	Min value of local coordinate. More...

virtual double	s_max () const
	Max. value of local coordinate. More...

double	size () const

virtual double	compute_physical_size () const

virtual void	point_output_data (const Vector< double > &s, Vector< double > &data)

void	point_output (std::ostream &outfile, const Vector< double > &s)

virtual unsigned	nplot_points_paraview (const unsigned &nplot) const

virtual unsigned	nsub_elements_paraview (const unsigned &nplot) const

void	output_paraview (std::ofstream &file_out, const unsigned &nplot) const

virtual void	write_paraview_output_offset_information (std::ofstream &file_out, const unsigned &nplot, unsigned &counter) const

virtual void	write_paraview_type (std::ofstream &file_out, const unsigned &nplot) const

virtual void	write_paraview_offsets (std::ofstream &file_out, const unsigned &nplot, unsigned &offset_sum) const

virtual unsigned	nscalar_paraview () const

virtual void	scalar_value_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot) const

virtual void	scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const

virtual void	scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const

virtual std::string	scalar_name_paraview (const unsigned &i) const

virtual void	output (std::ostream &outfile)

virtual void	output (std::ostream &outfile, const unsigned &n_plot)

virtual void	output (const unsigned &t, std::ostream &outfile, const unsigned &n_plot) const

virtual void	output (FILE *file_pt)

virtual void	output (FILE *file_pt, const unsigned &n_plot)

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt)
	Output an exact solution over the element. More...

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt)
	Output a time-dependent exact solution over the element. More...

virtual void	output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, const SolutionFunctorBase &exact_soln) const
	Output a time-dependent exact solution over the element. More...

virtual void	get_s_plot (const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const

virtual std::string	tecplot_zone_string (const unsigned &nplot) const

virtual void	write_tecplot_zone_footer (std::ostream &outfile, const unsigned &nplot) const

virtual void	write_tecplot_zone_footer (FILE *file_pt, const unsigned &nplot) const

virtual unsigned	nplot_points (const unsigned &nplot) const

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)
	Calculate the norm of the error and that of the exact solution. More...

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
	Calculate the norm of the error and that of the exact solution. More...

virtual void	compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)

virtual void	compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)

virtual void	compute_abs_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error)

void	integrate_fct (FiniteElement::SteadyExactSolutionFctPt integrand_fct_pt, Vector< double > &integral)
	Integrate Vector-valued function over element. More...

void	integrate_fct (FiniteElement::UnsteadyExactSolutionFctPt integrand_fct_pt, const double &time, Vector< double > &integral)
	Integrate Vector-valued time-dep function over element. More...

virtual void	build_face_element (const int &face_index, FaceElement *face_element_pt)

virtual unsigned	self_test ()

virtual unsigned	get_bulk_node_number (const int &face_index, const unsigned &i) const

virtual int	face_outer_unit_normal_sign (const int &face_index) const
	Get the sign of the outer unit normal on the face given by face_index. More...

void	face_node_number_error_check (const unsigned &i) const
	Range check for face node numbers. More...

virtual CoordinateMappingFctPt	face_to_bulk_coordinate_fct_pt (const int &face_index) const

virtual BulkCoordinateDerivativesFctPt	bulk_coordinate_derivatives_fct_pt (const int &face_index) const

Public Member Functions inherited from oomph::GeneralisedElement
	GeneralisedElement ()
	Constructor: Initialise all pointers and all values to zero. More...

virtual	~GeneralisedElement ()
	Virtual destructor to clean up any memory allocated by the object. More...

	GeneralisedElement (const GeneralisedElement &)=delete
	Broken copy constructor. More...

void	operator= (const GeneralisedElement &)=delete
	Broken assignment operator. More...

Data *&	internal_data_pt (const unsigned &i)
	Return a pointer to i-th internal data object. More...

Data *const &	internal_data_pt (const unsigned &i) const
	Return a pointer to i-th internal data object (const version) More...

Data *&	external_data_pt (const unsigned &i)
	Return a pointer to i-th external data object. More...

Data *const &	external_data_pt (const unsigned &i) const
	Return a pointer to i-th external data object (const version) More...

unsigned long	eqn_number (const unsigned &ieqn_local) const

int	local_eqn_number (const unsigned long &ieqn_global) const

unsigned	add_external_data (Data *const &data_pt, const bool &fd=true)

bool	external_data_fd (const unsigned &i) const

void	exclude_external_data_fd (const unsigned &i)

void	include_external_data_fd (const unsigned &i)

void	flush_external_data ()
	Flush all external data. More...

void	flush_external_data (Data *const &data_pt)
	Flush the object addressed by data_pt from the external data array. More...

unsigned	ninternal_data () const
	Return the number of internal data objects. More...

unsigned	nexternal_data () const
	Return the number of external data objects. More...

unsigned	ndof () const
	Return the number of equations/dofs in the element. More...

void	dof_vector (const unsigned &t, Vector< double > &dof)
	Return the vector of dof values at time level t. More...

void	dof_pt_vector (Vector< double * > &dof_pt)
	Return the vector of pointers to dof values. More...

void	set_internal_data_time_stepper (const unsigned &i, TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)

void	assign_internal_eqn_numbers (unsigned long &global_number, Vector< double * > &Dof_pt)

void	describe_dofs (std::ostream &out, const std::string &current_string) const

void	add_internal_value_pt_to_map (std::map< unsigned, double * > &map_of_value_pt)

virtual void	assign_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	complete_setup_of_dependencies ()

virtual void	get_residuals (Vector< double > &residuals)

virtual void	get_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)

virtual void	get_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)

virtual void	get_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)

virtual void	get_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)

virtual void	get_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)

virtual void	get_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)

virtual void	get_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)

virtual void	get_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)

virtual void	compute_norm (Vector< double > &norm)

virtual unsigned	ndof_types () const

virtual void	get_dof_numbers_for_unknowns (std::list< std::pair< unsigned long, unsigned >> &dof_lookup_list) const

Public Member Functions inherited from oomph::GeomObject
	GeomObject ()
	Default constructor. More...

	GeomObject (const unsigned &ndim)

	GeomObject (const unsigned &nlagrangian, const unsigned &ndim)

	GeomObject (const unsigned &nlagrangian, const unsigned &ndim, TimeStepper *time_stepper_pt)

	GeomObject (const GeomObject &dummy)=delete
	Broken copy constructor. More...

void	operator= (const GeomObject &)=delete
	Broken assignment operator. More...

virtual	~GeomObject ()
	(Empty) destructor More...

unsigned	nlagrangian () const
	Access function to # of Lagrangian coordinates. More...

unsigned	ndim () const
	Access function to # of Eulerian coordinates. More...

void	set_nlagrangian_and_ndim (const unsigned &n_lagrangian, const unsigned &n_dim)
	Set # of Lagrangian and Eulerian coordinates. More...

TimeStepper *&	time_stepper_pt ()

TimeStepper *	time_stepper_pt () const

virtual void	position (const double &t, const Vector< double > &zeta, Vector< double > &r) const

virtual void	dposition (const Vector< double > &zeta, DenseMatrix< double > &drdzeta) const

virtual void	d2position (const Vector< double > &zeta, RankThreeTensor< double > &ddrdzeta) const

virtual void	d2position (const Vector< double > &zeta, Vector< double > &r, DenseMatrix< double > &drdzeta, RankThreeTensor< double > &ddrdzeta) const

Public Member Functions inherited from oomph::BrickElementBase
	BrickElementBase ()
	Constructor. Empty. More...

virtual unsigned	nvertex_node () const =0
	Number of vertex nodes in the element. More...

virtual Node *	vertex_node_pt (const unsigned &j) const =0
	Pointer to the j-th vertex node in the element. More...

Public Member Functions inherited from oomph::QElementBase
	QElementBase ()
	Constructor: Initialise pointers to macro element reference coords. More...

	QElementBase (const QElementBase &)=delete
	Broken copy constructor. More...

virtual	~QElementBase ()
	Broken assignment operator. More...

bool	local_coord_is_valid (const Vector< double > &s)
	Check whether the local coordinate are valid or not. More...

void	move_local_coord_back_into_element (Vector< double > &s) const

double &	s_macro_ll (const unsigned &i)

double &	s_macro_ur (const unsigned &i)

double	s_macro_ll (const unsigned &i) const

double	s_macro_ur (const unsigned &i) const

void	get_x_from_macro_element (const Vector< double > &s, Vector< double > &x) const

void	get_x_from_macro_element (const unsigned &t, const Vector< double > &s, Vector< double > &x)

unsigned	nnode_on_face () const

ElementGeometry::ElementGeometry	element_geometry () const
	It's a Q element! More...

Public Member Functions inherited from oomph::QElementGeometricBase
	QElementGeometricBase ()
	Empty default constructor. More...

	QElementGeometricBase (const QElementGeometricBase &)=delete
	Broken copy constructor. More...

Public Member Functions inherited from oomph::RefineableSolidElement
	RefineableSolidElement ()
	Constructor. More...

virtual	~RefineableSolidElement ()
	Virtual Destructor, delete any allocated storage. More...

void	assign_solid_local_eqn_numbers (const bool &store_local_dof_pt)

unsigned	ngeom_data () const

Data *	geom_data_pt (const unsigned &j)

void	identify_geometric_data (std::set< Data * > &geometric_data_pt)

void	fill_in_jacobian_from_solid_position_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)

bool	is_undeformed_macro_element_used_for_new_lagrangian_coords () const

void	enable_use_of_undeformed_macro_element_for_new_lagrangian_coords ()

void	disable_use_of_undeformed_macro_element_for_new_lagrangian_coords ()

DenseMatrix< int > &	local_position_hang_eqn (Node *const &node_pt)

virtual void	further_build ()

Public Member Functions inherited from oomph::SolidFiniteElement
void	set_lagrangian_dimension (const unsigned &lagrangian_dimension)

virtual bool	has_internal_solid_data ()

	SolidFiniteElement ()
	Constructor: Set defaults. More...

virtual	~SolidFiniteElement ()
	Destructor to clean up any allocated memory. More...

	SolidFiniteElement (const SolidFiniteElement &)=delete
	Broken copy constructor. More...

double	zeta_nodal (const unsigned &n, const unsigned &k, const unsigned &i) const

void	set_undeformed_macro_elem_pt (MacroElement *undeformed_macro_elem_pt)

MacroElement *	undeformed_macro_elem_pt ()
	Access function to pointer to "undeformed" macro element. More...

double	dshape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi) const

virtual double	dshape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi) const

double	d2shape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const

virtual double	d2shape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const

unsigned	lagrangian_dimension () const

unsigned	nnodal_lagrangian_type () const

Node *	construct_node (const unsigned &n)
	Construct the local node n and return a pointer to it. More...

Node *	construct_node (const unsigned &n, TimeStepper *const &time_stepper_pt)

Node *	construct_boundary_node (const unsigned &n)

Node *	construct_boundary_node (const unsigned &n, TimeStepper *const &time_stepper_pt)

virtual void	assign_all_generic_local_eqn_numbers (const bool &store_local_dof_pt)

void	describe_local_dofs (std::ostream &out, const std::string &current_string) const

double	raw_lagrangian_position (const unsigned &n, const unsigned &i) const

double	raw_lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

double	lagrangian_position (const unsigned &n, const unsigned &i) const
	Return i-th Lagrangian coordinate at local node n. More...

double	lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const

virtual double	interpolated_xi (const Vector< double > &s, const unsigned &i) const

virtual void	interpolated_xi (const Vector< double > &s, Vector< double > &xi) const

virtual void	interpolated_dxids (const Vector< double > &s, DenseMatrix< double > &dxids) const

virtual void	J_lagrangian (const Vector< double > &s) const

virtual double	J_lagrangian_at_knot (const unsigned &ipt) const

SolidInitialCondition *&	solid_ic_pt ()
	Pointer to object that describes the initial condition. More...

void	enable_solve_for_consistent_newmark_accel ()

void	disable_solve_for_consistent_newmark_accel ()
	Set to reset the problem being solved to be the standard problem. More...

MultiplierFctPt &	multiplier_fct_pt ()

MultiplierFctPt	multiplier_fct_pt () const

virtual void	get_residuals_for_solid_ic (Vector< double > &residuals)

void	fill_in_residuals_for_solid_ic (Vector< double > &residuals)

void	fill_in_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_jacobian_for_newmark_accel (DenseMatrix< double > &jacobian)

void	compute_norm (double &el_norm)

int	position_local_eqn (const unsigned &n, const unsigned &k, const unsigned &j) const

Public Member Functions inherited from oomph::QSolidElementBase
	QSolidElementBase ()
	Constructor: Empty. More...

	QSolidElementBase (const QSolidElementBase &)=delete
	Broken copy constructor. More...

void	get_x_and_xi (const Vector< double > &s, Vector< double > &x_fe, Vector< double > &x, Vector< double > &xi_fe, Vector< double > &xi) const

Additional Inherited Members
Public Types inherited from oomph::RefineableQElement< 3 >
typedef void(RefineableQElement< 3 >::*	VoidMemFctPt) ()

Public Types inherited from oomph::FiniteElement
typedef void(*	SteadyExactSolutionFctPt) (const Vector< double > &, Vector< double > &)

typedef void(*	UnsteadyExactSolutionFctPt) (const double &, const Vector< double > &, Vector< double > &)

Public Types inherited from oomph::SolidFiniteElement
typedef double(*	MultiplierFctPt) (const Vector< double > &xi)

Static Public Member Functions inherited from oomph::RefineableElement
static double &	max_integrity_tolerance ()
	Max. allowed discrepancy in element integrity check. More...

Static Public Attributes inherited from oomph::FiniteElement
static double	Tolerance_for_singular_jacobian = 1.0e-16
	Tolerance below which the jacobian is considered singular. More...

static bool	Accept_negative_jacobian = false

static bool	Suppress_output_while_checking_for_inverted_elements

Static Public Attributes inherited from oomph::GeneralisedElement
static bool	Suppress_warning_about_repeated_internal_data

static bool	Suppress_warning_about_repeated_external_data = true

static double	Default_fd_jacobian_step = 1.0e-8

Protected Member Functions inherited from oomph::RefineableQElement< 3 >
void	setup_father_bounds ()

void	get_face_bcs (const int &edge, Vector< int > &bound_cons) const

void	get_boundaries (const int &edge, std::set< unsigned > &boundaries) const

void	get_bcs (int bound, Vector< int > &bound_cons) const

void	interpolated_zeta_on_face (const unsigned &boundary, const int &face, const Vector< double > &s, Vector< double > &zeta)

void	setup_hang_for_value (const int &value_id)

virtual void	oc_hang_helper (const int &value_id, const int &my_edge, std::ofstream &output_hangfile)

Protected Member Functions inherited from oomph::RefineableElement
void	assemble_local_to_eulerian_jacobian (const DShape &dpsids, DenseMatrix< double > &jacobian) const

void	assemble_local_to_eulerian_jacobian2 (const DShape &d2psids, DenseMatrix< double > &jacobian2) const

void	assemble_eulerian_base_vectors (const DShape &dpsids, DenseMatrix< double > &interpolated_G) const

double	local_to_eulerian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

void	assign_hanging_local_eqn_numbers (const bool &store_local_dof_pt)
	Assign the local equation numbers for hanging node variables. More...

virtual void	fill_in_jacobian_from_nodal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)

Protected Member Functions inherited from oomph::FiniteElement
template<unsigned DIM>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual double	invert_jacobian_mapping (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

virtual double	local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

double	local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const

virtual void	dJ_eulerian_dnodal_coordinates (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<unsigned DIM>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

virtual void	d_dshape_eulerian_dnodal_coordinates (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<unsigned DIM>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

virtual void	transform_derivatives (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const

void	transform_derivatives_diagonal (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const

virtual void	transform_second_derivatives (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<unsigned DIM>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<unsigned DIM>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

void	fill_in_jacobian_from_nodal_by_fd (DenseMatrix< double > &jacobian)

virtual void	update_before_nodal_fd ()

virtual void	reset_after_nodal_fd ()

virtual void	update_in_nodal_fd (const unsigned &i)

virtual void	reset_in_nodal_fd (const unsigned &i)

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	Zero-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	One-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
	Two-d specialisation of function to calculate inverse of jacobian mapping. More...

template<>
double	invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const

template<>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

template<>
void	transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const

Protected Member Functions inherited from oomph::GeneralisedElement
unsigned	add_internal_data (Data *const &data_pt, const bool &fd=true)

bool	internal_data_fd (const unsigned &i) const

void	exclude_internal_data_fd (const unsigned &i)

void	include_internal_data_fd (const unsigned &i)

void	clear_global_eqn_numbers ()

void	add_global_eqn_numbers (std::deque< unsigned long > const &global_eqn_numbers, std::deque< double * > const &global_dof_pt)

virtual void	assign_internal_and_external_local_eqn_numbers (const bool &store_local_dof_pt)

virtual void	assign_additional_local_eqn_numbers ()

int	internal_local_eqn (const unsigned &i, const unsigned &j) const

int	external_local_eqn (const unsigned &i, const unsigned &j)

virtual void	fill_in_contribution_to_residuals (Vector< double > &residuals)

void	fill_in_jacobian_from_internal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_internal_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_external_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

void	fill_in_jacobian_from_external_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)

virtual void	update_before_internal_fd ()

virtual void	reset_after_internal_fd ()

virtual void	update_in_internal_fd (const unsigned &i)

virtual void	reset_in_internal_fd (const unsigned &i)

virtual void	update_before_external_fd ()

virtual void	reset_after_external_fd ()

virtual void	update_in_external_fd (const unsigned &i)

virtual void	reset_in_external_fd (const unsigned &i)

virtual void	fill_in_contribution_to_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)

virtual void	fill_in_contribution_to_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)

virtual void	fill_in_contribution_to_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)

virtual void	fill_in_contribution_to_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)

virtual void	fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)

virtual void	fill_in_contribution_to_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)

virtual void	fill_in_contribution_to_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)

virtual void	fill_in_contribution_to_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)

Protected Member Functions inherited from oomph::RefineableSolidElement
void	assemble_local_to_lagrangian_jacobian (const DShape &dpsids, DenseMatrix< double > &jacobian) const

void	assemble_local_to_lagrangian_jacobian2 (const DShape &d2psids, DenseMatrix< double > &jacobian2) const

double	local_to_lagrangian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

Protected Member Functions inherited from oomph::SolidFiniteElement
void	fill_in_generic_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)

void	set_nnodal_lagrangian_type (const unsigned &nlagrangian_type)

virtual double	local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const

double	local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const

void	describe_solid_local_dofs (std::ostream &out, const std::string &current_string) const
	Classifies dofs locally for solid specific aspects. More...

void	fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)

void	fill_in_jacobian_from_solid_position_by_fd (DenseMatrix< double > &jacobian)

virtual void	update_before_solid_position_fd ()

virtual void	reset_after_solid_position_fd ()

virtual void	update_in_solid_position_fd (const unsigned &i)

virtual void	reset_in_solid_position_fd (const unsigned &i)

Static Protected Member Functions inherited from oomph::RefineableElement
static void	check_value_id (const int &n_continuously_interpolated_values, const int &value_id)

Protected Attributes inherited from oomph::RefineableElement
Tree *	Tree_pt
	A pointer to a general tree object. More...

unsigned	Refine_level
	Refinement level. More...

bool	To_be_refined
	Flag for refinement. More...

bool	Refinement_is_enabled
	Flag to indicate suppression of any refinement. More...

bool	Sons_to_be_unrefined
	Flag for unrefinement. More...

long	Number
	Global element number – for plotting/validation purposes. More...

Protected Attributes inherited from oomph::FiniteElement
MacroElement *	Macro_elem_pt
	Pointer to the element's macro element (NULL by default) More...

Protected Attributes inherited from oomph::GeomObject
unsigned	NLagrangian
	Number of Lagrangian (intrinsic) coordinates. More...

unsigned	Ndim
	Number of Eulerian coordinates. More...

TimeStepper *	Geom_object_time_stepper_pt

Protected Attributes inherited from oomph::RefineableSolidElement
bool	Use_undeformed_macro_element_for_new_lagrangian_coords

Protected Attributes inherited from oomph::SolidFiniteElement
MacroElement *	Undeformed_macro_elem_pt
	Pointer to the element's "undeformed" macro element (NULL by default) More...

SolidInitialCondition *	Solid_ic_pt
	Pointer to object that specifies the initial condition. More...

bool	Solve_for_consistent_newmark_accel_flag

Static Protected Attributes inherited from oomph::RefineableQElement< 3 >
static std::map< unsigned, DenseMatrix< int > >	Father_bound

Static Protected Attributes inherited from oomph::RefineableElement
static double	Max_integrity_tolerance = 1.0e-8
	Max. allowed discrepancy in element integrity check. More...

Static Protected Attributes inherited from oomph::FiniteElement
static const unsigned	Default_Initial_Nvalue = 0
	Default value for the number of values at a node. More...

static const double	Node_location_tolerance = 1.0e-14

static const unsigned	N2deriv [] = {0, 1, 3, 6}

Static Protected Attributes inherited from oomph::GeneralisedElement
static DenseMatrix< double >	Dummy_matrix

static std::deque< double * >	Dof_pt_deque

Detailed Description

Refineable version of Solid brick elements.

Constructor & Destructor Documentation

◆ RefineableSolidQElement() [1/2]

oomph::RefineableSolidQElement< 3 >::RefineableSolidQElement ( )

inline

Constructor, just call the constructor of the RefineableQElement<2>

       : RefineableQElement<3>(), RefineableSolidElement()
     {
     }

◆ RefineableSolidQElement() [2/2]

oomph::RefineableSolidQElement< 3 >::RefineableSolidQElement ( const RefineableSolidQElement< 3 > & dummy )

delete

Broken copy constructor.

◆ ~RefineableSolidQElement()

virtual oomph::RefineableSolidQElement< 3 >::~RefineableSolidQElement ( )

inlinevirtual

Broken assignment operator.

Virtual Destructor

255 {}

Member Function Documentation

◆ build()

void oomph::RefineableSolidQElement< 3 >::build	(	Mesh *&	mesh_pt,
		Vector< Node * > &	new_node_pt,
		bool &	was_already_built,
		std::ofstream &	new_nodes_file
	)

inlinevirtual

Build the element, i.e. give it nodal positions, apply BCs, etc. Incl. documention into new_nodes_file

Reimplemented from oomph::RefineableQElement< 3 >.

     {
       using namespace OcTreeNames;
  
       // Call the standard (non-elastic) build function
       RefineableQElement<3>::build(
         mesh_pt, new_node_pt, was_already_built, new_nodes_file);
  
       // Are we done?
       if (was_already_built) return;
  
       // Now need to loop over the nodes again and set solid variables
  
       // What type of son am I? Ask my quadtree representation...
       int son_type = octree_pt()->son_type();
  
       // Which element (!) is my father? (We must have a father
       // since was_already_built is false...)
       RefineableSolidQElement<3>* father_el_pt =
         dynamic_cast<RefineableSolidQElement<3>*>(
           Tree_pt->father_pt()->object_pt());
  
  
 #ifdef PARANOID
       // Currently we can't handle the case of generalised coordinates
       // since we haven't established how they should be interpolated
       // Buffer this case:
       if (static_cast<SolidNode*>(father_el_pt->node_pt(0))
             ->nlagrangian_type() != 1)
       {
         throw OomphLibError(
           "We can't handle generalised nodal positions (yet).\n",
           OOMPH_CURRENT_FUNCTION,
           OOMPH_EXCEPTION_LOCATION);
       }
 #endif
  
  
       // Now get coordinates and stuff
       Vector<int> s_lo(3);
       Vector<int> s_hi(3);
       Vector<double> s(3);
       Vector<double> xi(3);
       Vector<double> xi_fe(3);
       Vector<double> x(3);
       Vector<double> x_fe(3);
  
       // Get the number of 1d nodes
       unsigned n_p = nnode_1d();
  
  
       // Setup vertex coordinates in father element:
       //--------------------------------------------
  
       // find the s_lo coordinates
       s_lo = octree_pt()->Direction_to_vector[son_type];
  
       // just scale them, because the Direction_to_vector
       // doesn't really gives s_lo;
       for (int i = 0; i < 3; i++)
       {
         s_lo[i] = (s_lo[i] + 1) / 2 - 1;
       }
  
       // setup s_hi (Actually s_hi[i]=s_lo[i]+1)
       for (int i = 0; i < 3; i++)
       {
         s_hi[i] = s_lo[i] + 1;
       }
  
       // Pass Undeformed macro element pointer on to sons and
       // set coordinates in macro element
       if (father_el_pt->Undeformed_macro_elem_pt != 0)
       {
         Undeformed_macro_elem_pt = father_el_pt->Undeformed_macro_elem_pt;
         for (unsigned i = 0; i < 3; i++)
         {
           s_macro_ll(i) =
             father_el_pt->s_macro_ll(i) +
             0.5 * (s_lo[i] + 1.0) *
               (father_el_pt->s_macro_ur(i) - father_el_pt->s_macro_ll(i));
           s_macro_ur(i) =
             father_el_pt->s_macro_ll(i) +
             0.5 * (s_hi[i] + 1.0) *
               (father_el_pt->s_macro_ur(i) - father_el_pt->s_macro_ll(i));
         }
       }
  
  
       unsigned jnod = 0;
       Vector<double> x_small(3);
       Vector<double> x_large(3);
  
       Vector<double> s_fraction(3);
  
  
       // Loop over nodes in element
       for (unsigned i0 = 0; i0 < n_p; i0++)
       {
         // Get the fractional position of the node in the direction of s[0]
         s_fraction[0] = local_one_d_fraction_of_node(i0, 0);
         // Local coordinate in father element
         s[0] = s_lo[0] + (s_hi[0] - s_lo[0]) * s_fraction[0];
  
         for (unsigned i1 = 0; i1 < n_p; i1++)
         {
           // Get the fractional position of the node in the direction of s[1]
           s_fraction[1] = local_one_d_fraction_of_node(i1, 1);
           // Local coordinate in father element
           s[1] = s_lo[1] + (s_hi[1] - s_lo[1]) * s_fraction[1];
  
           for (unsigned i2 = 0; i2 < n_p; i2++)
           {
             // Get the fractional position of the node in the direction of s[2]
             s_fraction[2] = local_one_d_fraction_of_node(i2, 2);
             // Local coordinate in father element
             s[2] = s_lo[2] + (s_hi[2] - s_lo[2]) * s_fraction[2];
  
             // Local node number
             jnod = i0 + n_p * i1 + n_p * n_p * i2;
  
             // Get position from father element -- this uses the macro
             // element representation(s) if appropriate. If the node
             // turns out to be a hanging node later on, then
             // its position gets adjusted in line with its
             // hanging node interpolation.
             father_el_pt->get_x_and_xi(s, x_fe, x, xi_fe, xi);
  
             // Cast the node to an Solid node
             SolidNode* elastic_node_pt = static_cast<SolidNode*>(node_pt(jnod));
  
             for (unsigned i = 0; i < 3; i++)
             {
               // x_fe is the FE representation -- this is all we can
               // work with in a solid mechanics problem. If you wish
               // to reposition nodes on curvilinear boundaries of
               // a domain to their exact positions on those boundaries
               // you'll have to do this yourself! [Note: We used to
               // use the macro-element-based representation
               // to assign the position of pinned nodes but this is not always
               // correct since pinning doesn't mean "pin in place" or
               // "pin to the curvilinear boundary". For instance, we could
               // impose the boundary displacement manually.
               elastic_node_pt->x(i) = x_fe[i];
  
               // Lagrangian coordinates can come from undeformed macro element
               if (Use_undeformed_macro_element_for_new_lagrangian_coords)
               {
                 elastic_node_pt->xi(i) = xi[i];
               }
               else
               {
                 elastic_node_pt->xi(i) = xi_fe[i];
               }
             }
  
             // Are there any history values to be dealt with?
             TimeStepper* time_stepper_pt =
               father_el_pt->node_pt(0)->time_stepper_pt();
  
             // Number of history values (incl. present)
             unsigned ntstorage = time_stepper_pt->ntstorage();
             if (ntstorage != 1)
             {
               // Loop over # of history values (excluding present which has been
               // done above)
               for (unsigned t = 1; t < ntstorage; t++)
               {
                 // History values can (and in the case of Newmark timestepping,
                 // the scheme most likely to be used for Solid computations, do)
                 // include non-positional values, e.g. velocities and accels.
  
                 // Set previous positions of the new node
                 for (unsigned i = 0; i < 3; i++)
                 {
                   elastic_node_pt->x(t, i) =
                     father_el_pt->interpolated_x(t, s, i);
                 }
               }
             }
           } // End of s2 loop
         } // End of vertical loop over nodes in element
  
       } // End of horizontal loop over nodes in element
     }

References oomph::QSolidElementBase::get_x_and_xi(), i, oomph::FiniteElement::interpolated_x(), oomph::SolidNode::nlagrangian_type(), oomph::FiniteElement::node_pt(), oomph::TimeStepper::ntstorage(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, s, oomph::QElementBase::s_macro_ll(), oomph::QElementBase::s_macro_ur(), plotPSD::t, oomph::Data::time_stepper_pt(), oomph::SolidFiniteElement::Undeformed_macro_elem_pt, plotDoE::x, oomph::Node::x(), and oomph::SolidNode::xi().

◆ get_face_solid_bcs()

void oomph::RefineableSolidQElement< 3 >::get_face_solid_bcs	(	const int &	face,
		Vector< int > &	solid_bound_cons
	)		const

Determine vector of solid (positional) boundary conditions along face (R/L/U/D/B/F) [Pressure does not have to be included since it can't be subjected to bc at more than one node anyway]

Determine Vector of solid (positional) boundary conditions along the element's edge (S/N/W/E) – BC is the least restrictive combination of all the nodes on this edge

Usual convention:

solid_bound_cons[i]=0 if displacement in coordinate direction i on this boundary is free
solid_bound_cons[i]=1 if it's pinned

   {
     using namespace OcTreeNames;
  
     // Number of nodes along 1D edge
     unsigned n_p = nnode_1d();
     // the four corner nodes on the boundary
     unsigned node1, node2, node3, node4;
  
     // Set the four corner nodes for the face
     switch (face)
     {
       case U:
         node1 = n_p * n_p * n_p - 1;
         node2 = n_p * n_p - 1;
         node3 = n_p * (n_p - 1);
         node4 = n_p * (n_p * n_p - 1);
         break;
  
       case D:
         node1 = 0;
         node2 = n_p - 1;
         node3 = (n_p * n_p + 1) * (n_p - 1);
         node4 = n_p * n_p * (n_p - 1);
         break;
  
       case R:
         node1 = n_p - 1;
         node2 = (n_p * n_p + 1) * (n_p - 1);
         node3 = n_p * n_p * n_p - 1;
         node4 = n_p * n_p - 1;
         break;
  
       case L:
         node1 = 0;
         node2 = n_p * (n_p - 1);
         node3 = n_p * (n_p * n_p - 1);
         node4 = n_p * n_p * (n_p - 1);
         break;
  
       case B:
         node1 = 0;
         node2 = n_p - 1;
         node3 = n_p * n_p - 1;
         node4 = n_p * (n_p - 1);
         break;
  
       case F:
         node1 = n_p * n_p * n_p - 1;
         node2 = n_p * (n_p * n_p - 1);
         node3 = n_p * n_p * (n_p - 1);
         node4 = (n_p - 1) * (n_p * n_p + 1);
         break;
  
       default:
         std::ostringstream error_stream;
         error_stream << "Wrong edge " << face << " passed\n";
  
         throw OomphLibError(
           error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
     }
  
     // Cast to solid nodes
     SolidNode* solid_node1_pt = dynamic_cast<SolidNode*>(node_pt(node1));
     SolidNode* solid_node2_pt = dynamic_cast<SolidNode*>(node_pt(node2));
     SolidNode* solid_node3_pt = dynamic_cast<SolidNode*>(node_pt(node3));
     SolidNode* solid_node4_pt = dynamic_cast<SolidNode*>(node_pt(node4));
  
     //#ifdef PARANOID
     if (solid_node1_pt == 0)
     {
       throw OomphLibError(
         "Corner node 1 cannot be cast to SolidNode --> something is wrong",
         OOMPH_CURRENT_FUNCTION,
         OOMPH_EXCEPTION_LOCATION);
     }
  
     if (solid_node2_pt == 0)
     {
       throw OomphLibError(
         "Corner node 2 cannot be cast to SolidNode --> something is wrong",
         OOMPH_CURRENT_FUNCTION,
         OOMPH_EXCEPTION_LOCATION);
     }
  
     if (solid_node3_pt == 0)
     {
       throw OomphLibError(
         "Corner node 3 cannot be cast to SolidNode --> something is wrong",
         OOMPH_CURRENT_FUNCTION,
         OOMPH_EXCEPTION_LOCATION);
     }
  
     if (solid_node4_pt == 0)
     {
       throw OomphLibError(
         "Corner node 4 cannot be cast to SolidNode --> something is wrong",
         OOMPH_CURRENT_FUNCTION,
         OOMPH_EXCEPTION_LOCATION);
     }
  
     //#endif
  
     // Number of coordinates
     unsigned n_dim = this->nodal_dimension();
  
     // Loop over all directions, the least restrictive value is
     // the multiplication of the boundary conditions at the 4 nodes
     // Assuming that free is always zero and pinned is one
     for (unsigned k = 0; k < n_dim; k++)
     {
       solid_bound_cons[k] = solid_node1_pt->position_is_pinned(k) *
                             solid_node2_pt->position_is_pinned(k) *
                             solid_node3_pt->position_is_pinned(k) *
                             solid_node4_pt->position_is_pinned(k);
     }
   }

References D, oomph::OcTreeNames::F, k, L, OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::SolidNode::position_is_pinned(), R, and RachelsAdvectionDiffusion::U.

◆ get_jacobian()

void oomph::RefineableSolidQElement< 3 >::get_jacobian	(	Vector< double > &	residuals,
		DenseMatrix< double > &	jacobian
	)

inlinevirtual

Use the generic finite difference routine defined in RefineableSolidElement to calculate the Jacobian matrix

Reimplemented from oomph::GeneralisedElement.

     {
       RefineableSolidElement::get_jacobian(residuals, jacobian);
     }

References oomph::GeneralisedElement::get_jacobian().

◆ get_solid_bcs()

void oomph::RefineableSolidQElement< 3 >::get_solid_bcs	(	int	bound,
		Vector< int > &	solid_bound_cons
	)		const

Determine vector of solid (positional) boundary conditions along edge (or on vertex) bound (S/W/N/E/SW/SE/NW/NE): For direction i, solid_bound_cons[i]=1 if displacement in this coordinate direction is pinned and 0 if it's free.

Determine vector of solid (positional) boundary conditions along the element's boundary (or vertex) bound (S/W/N/E/SW/SE/NW/NE).

This function assumes that the same boundary condition is applied along the entire length of an element's edge (of course, the vertices combine the boundary conditions of their two adjacent edges in the most restrictive combination. Hence, if we're at a vertex, we apply the most restrictive boundary condition of the two adjacent edges. If we're on an edge (in its proper interior), we apply the least restrictive boundary condition of all nodes along the edge.

Usual convention:

solid_bound_cons[i]=0 if displacement in coordinate direction i on this boundary is free.
solid_bound_cons[i]=1 if it's pinned.

   {
     using namespace OcTreeNames;
  
     // Spatial dimension of all nodes
     unsigned n_dim = this->nodal_dimension();
     // Set up temporary vectors to hold edge boundary conditions
     Vector<int> bound_cons1(n_dim), bound_cons2(n_dim);
     Vector<int> bound_cons3(n_dim);
  
     Vector<int> vect1(3), vect2(3), vect3(3);
     Vector<int> vect_elem;
     Vector<int> notzero;
     int n = 0;
  
     vect_elem = OcTree::Direction_to_vector[bound];
  
     // Just to see if bound is a face, an edge, or a vertex, n stores
     // the number of non-zero values in the vector reprensenting the bound
     // and the vector notzero stores the position of these values
     for (int i = 0; i < 3; i++)
     {
       if (vect_elem[i] != 0)
       {
         n++;
         notzero.push_back(i);
       }
     }
  
     switch (n)
     {
         // If there is only one non-zero value, bound is a face
       case 1:
         get_face_solid_bcs(bound, solid_bound_cons);
         break;
  
         // If there are two non-zero values, bound is an edge
       case 2:
  
         for (unsigned i = 0; i < 3; i++)
         {
           vect1[i] = 0;
           vect2[i] = 0;
         }
         // vect1 and vect2 are the vector of the two faces adjacent to bound
         vect1[notzero[0]] = vect_elem[notzero[0]];
         vect2[notzero[1]] = vect_elem[notzero[1]];
  
         get_face_solid_bcs(OcTree::Vector_to_direction[vect1], bound_cons1);
         get_face_solid_bcs(OcTree::Vector_to_direction[vect2], bound_cons2);
         // get the most restrictive bc
         for (unsigned k = 0; k < n_dim; k++)
         {
           solid_bound_cons[k] = (bound_cons1[k] || bound_cons2[k]);
         }
         break;
  
         // If there are three non-zero value, bound is a vertex
       case 3:
  
         for (unsigned i = 0; i < 3; i++)
         {
           vect1[i] = 0;
           vect2[i] = 0;
           vect3[i] = 0;
         }
         // vectors to the three adjacent faces of the vertex
         vect1[0] = vect_elem[0];
         vect2[1] = vect_elem[1];
         vect3[2] = vect_elem[2];
  
         get_face_solid_bcs(OcTree::Vector_to_direction[vect1], bound_cons1);
         get_face_solid_bcs(OcTree::Vector_to_direction[vect2], bound_cons2);
         get_face_solid_bcs(OcTree::Vector_to_direction[vect3], bound_cons3);
  
  
         // set the bcs to the most restrictive ones
         for (unsigned k = 0; k < n_dim; k++)
         {
           solid_bound_cons[k] =
             (bound_cons1[k] || bound_cons2[k] || bound_cons3[k]);
         }
         break;
  
       default:
         throw OomphLibError("Make sure you are not giving  OMEGA as bound",
                             OOMPH_CURRENT_FUNCTION,
                             OOMPH_EXCEPTION_LOCATION);
     }
   }

References oomph::OcTree::Direction_to_vector, i, k, n, OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, and oomph::OcTree::Vector_to_direction.

Referenced by oomph::RefineableQElement< 3 >::build(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::p_refine(), oomph::PRefineableQElement< 3, INITIAL_NNODE_1D >::rebuild_from_sons(), and oomph::RefineableQSpectralElement< 3 >::rebuild_from_sons().

◆ set_macro_elem_pt() [1/2]

void oomph::RefineableSolidQElement< 3 >::set_macro_elem_pt ( MacroElement * macro_elem_pt )

inlinevirtual

Final over-ride: Use version in QSolidElementBase.

Reimplemented from oomph::QSolidElementBase.

     {
       QSolidElementBase::set_macro_elem_pt(macro_elem_pt);
     }

References oomph::QSolidElementBase::set_macro_elem_pt().

◆ set_macro_elem_pt() [2/2]

void oomph::RefineableSolidQElement< 3 >::set_macro_elem_pt	(	MacroElement *	macro_elem_pt,
		MacroElement *	undeformed_macro_elem_pt
	)

inlinevirtual

Final over-ride: Use version in QSolidElementBase.

Reimplemented from oomph::QSolidElementBase.

     {
       QSolidElementBase::set_macro_elem_pt(macro_elem_pt,
                                            undeformed_macro_elem_pt);
     }

References oomph::QSolidElementBase::set_macro_elem_pt().

The documentation for this class was generated from the following files:

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ RefineableSolidQElement() [1/2]

◆ RefineableSolidQElement() [2/2]

◆ ~RefineableSolidQElement()

Member Function Documentation

◆ build()

◆ get_face_solid_bcs()

◆ get_jacobian()

◆ get_solid_bcs()

◆ set_macro_elem_pt() [1/2]

◆ set_macro_elem_pt() [2/2]