oomph::TPVDElement< DIM, NNODE_1D > Class Template Reference

#include <solid_elements.h>

+ Inheritance diagram for oomph::TPVDElement< DIM, NNODE_1D >:

Public Member Functions

 TPVDElement ()
 Constructor, there are no internal data points. More...
 
void output (std::ostream &outfile)
 Output function. More...
 
void output (std::ostream &outfile, const unsigned &n_plot)
 Output function. More...
 
void output (FILE *file_pt)
 C-style output function. More...
 
void output (FILE *file_pt, const unsigned &n_plot)
 C-style output function. More...
 
unsigned nrecovery_order ()
 
unsigned nvertex_node () const
 Number of vertex nodes in the element. More...
 
Nodevertex_node_pt (const unsigned &j) const
 Pointer to the j-th vertex node in the element. More...
 
unsigned num_Z2_flux_terms ()
 Number of 'flux' terms for Z2 error estimation. More...
 
void get_Z2_flux (const Vector< double > &s, Vector< double > &flux)
 
void describe_local_dofs (std::ostream &out, const std::string &current_string) const
 
- Public Member Functions inherited from oomph::PVDEquations< DIM >
 PVDEquations ()
 Constructor. More...
 
void get_stress (const Vector< double > &s, DenseMatrix< double > &sigma)
 
void fill_in_contribution_to_residuals (Vector< double > &residuals)
 
void fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)
 
void extended_output (std::ostream &outfile, const unsigned &n_plot)
 Output: x,y,[z],xi0,xi1,[xi2],gamma strain and stress components. More...
 
- Public Member Functions inherited from oomph::PVDEquationsBase< DIM >
 PVDEquationsBase ()
 
ConstitutiveLaw *& constitutive_law_pt ()
 Return the constitutive law pointer. More...
 
const doublelambda_sq () const
 Access function for timescale ratio (nondim density) More...
 
double *& lambda_sq_pt ()
 Access function for pointer to timescale ratio (nondim density) More...
 
IsotropicGrowthFctPtisotropic_growth_fct_pt ()
 Access function: Pointer to isotropic growth function. More...
 
PrestressFctPtprestress_fct_pt ()
 Access function: Pointer to pre-stress function. More...
 
IsotropicGrowthFctPt isotropic_growth_fct_pt () const
 Access function: Pointer to isotropic growth function (const version) More...
 
BodyForceFctPtbody_force_fct_pt ()
 Access function: Pointer to body force function. More...
 
BodyForceFctPt body_force_fct_pt () const
 Access function: Pointer to body force function (const version) More...
 
void enable_inertia ()
 Switch on solid inertia. More...
 
void disable_inertia ()
 Switch off solid inertia. More...
 
bool is_inertia_enabled () const
 Access function to flag that switches inertia on/off (const version) More...
 
virtual unsigned npres_solid () const
 
virtual int solid_p_local_eqn (const unsigned &i) const
 
virtual int solid_p_nodal_index () const
 
virtual void pin_elemental_redundant_nodal_solid_pressures ()
 Pin the element's redundant solid pressures (needed for refinement) More...
 
void get_strain (const Vector< double > &s, DenseMatrix< double > &strain) const
 Return the strain tensor. More...
 
void get_energy (double &pot_en, double &kin_en)
 Get potential (strain) and kinetic energy. More...
 
void get_deformed_covariant_basis_vectors (const Vector< double > &s, DenseMatrix< double > &def_covariant_basis)
 
void get_principal_stress (const Vector< double > &s, DenseMatrix< double > &principal_stress_vector, Vector< double > &principal_stress)
 
virtual void get_isotropic_growth (const unsigned &ipt, const Vector< double > &s, const Vector< double > &xi, double &gamma) const
 
void body_force (const Vector< double > &xi, Vector< double > &b) const
 
unsigned ndof_types () const
 returns the number of DOF types associated with this element. More...
 
void get_dof_numbers_for_unknowns (std::list< std::pair< unsigned long, unsigned >> &dof_lookup_list) const
 
void enable_evaluate_jacobian_by_fd ()
 Set Jacobian to be evaluated by FD? Else: Analytically. More...
 
void disable_evaluate_jacobian_by_fd ()
 Set Jacobian to be evaluated analytically Else: by FD. More...
 
bool is_jacobian_evaluated_by_fd () const
 Return the flag indicating whether the jacobian is evaluated by fd. More...
 
double prestress (const unsigned &i, const unsigned &j, const Vector< double > xi)
 
- Public Member Functions inherited from oomph::SolidFiniteElement
void set_lagrangian_dimension (const unsigned &lagrangian_dimension)
 
virtual bool has_internal_solid_data ()
 
 SolidFiniteElement ()
 Constructor: Set defaults. More...
 
virtual ~SolidFiniteElement ()
 Destructor to clean up any allocated memory. More...
 
 SolidFiniteElement (const SolidFiniteElement &)=delete
 Broken copy constructor. More...
 
unsigned ngeom_data () const
 Broken assignment operator. More...
 
Datageom_data_pt (const unsigned &j)
 
void identify_geometric_data (std::set< Data * > &geometric_data_pt)
 
double zeta_nodal (const unsigned &n, const unsigned &k, const unsigned &i) const
 
virtual void get_x_and_xi (const Vector< double > &s, Vector< double > &x_fe, Vector< double > &x, Vector< double > &xi_fe, Vector< double > &xi) const
 
virtual void set_macro_elem_pt (MacroElement *macro_elem_pt)
 
virtual void set_macro_elem_pt (MacroElement *macro_elem_pt, MacroElement *undeformed_macro_elem_pt)
 
void set_undeformed_macro_elem_pt (MacroElement *undeformed_macro_elem_pt)
 
MacroElementundeformed_macro_elem_pt ()
 Access function to pointer to "undeformed" macro element. More...
 
double dshape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi) const
 
virtual double dshape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi) const
 
double d2shape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const
 
virtual double d2shape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const
 
unsigned lagrangian_dimension () const
 
unsigned nnodal_lagrangian_type () const
 
Nodeconstruct_node (const unsigned &n)
 Construct the local node n and return a pointer to it. More...
 
Nodeconstruct_node (const unsigned &n, TimeStepper *const &time_stepper_pt)
 
Nodeconstruct_boundary_node (const unsigned &n)
 
Nodeconstruct_boundary_node (const unsigned &n, TimeStepper *const &time_stepper_pt)
 
virtual void assign_all_generic_local_eqn_numbers (const bool &store_local_dof_pt)
 
void describe_local_dofs (std::ostream &out, const std::string &current_string) const
 
double raw_lagrangian_position (const unsigned &n, const unsigned &i) const
 
double raw_lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const
 
double lagrangian_position (const unsigned &n, const unsigned &i) const
 Return i-th Lagrangian coordinate at local node n. More...
 
double lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const
 
virtual double interpolated_xi (const Vector< double > &s, const unsigned &i) const
 
virtual void interpolated_xi (const Vector< double > &s, Vector< double > &xi) const
 
virtual void interpolated_dxids (const Vector< double > &s, DenseMatrix< double > &dxids) const
 
virtual void J_lagrangian (const Vector< double > &s) const
 
virtual double J_lagrangian_at_knot (const unsigned &ipt) const
 
SolidInitialCondition *& solid_ic_pt ()
 Pointer to object that describes the initial condition. More...
 
void enable_solve_for_consistent_newmark_accel ()
 
void disable_solve_for_consistent_newmark_accel ()
 Set to reset the problem being solved to be the standard problem. More...
 
MultiplierFctPtmultiplier_fct_pt ()
 
MultiplierFctPt multiplier_fct_pt () const
 
virtual void get_residuals_for_solid_ic (Vector< double > &residuals)
 
void fill_in_residuals_for_solid_ic (Vector< double > &residuals)
 
void fill_in_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian)
 
void fill_in_jacobian_for_newmark_accel (DenseMatrix< double > &jacobian)
 
void compute_norm (double &el_norm)
 
int position_local_eqn (const unsigned &n, const unsigned &k, const unsigned &j) const
 
- Public Member Functions inherited from oomph::FiniteElement
void set_dimension (const unsigned &dim)
 
void set_nodal_dimension (const unsigned &nodal_dim)
 
void set_nnodal_position_type (const unsigned &nposition_type)
 Set the number of types required to interpolate the coordinate. More...
 
void set_n_node (const unsigned &n)
 
int nodal_local_eqn (const unsigned &n, const unsigned &i) const
 
double dJ_eulerian_at_knot (const unsigned &ipt, Shape &psi, DenseMatrix< double > &djacobian_dX) const
 
 FiniteElement ()
 Constructor. More...
 
virtual ~FiniteElement ()
 
 FiniteElement (const FiniteElement &)=delete
 Broken copy constructor. More...
 
virtual bool local_coord_is_valid (const Vector< double > &s)
 Broken assignment operator. More...
 
virtual void move_local_coord_back_into_element (Vector< double > &s) const
 
void get_centre_of_gravity_and_max_radius_in_terms_of_zeta (Vector< double > &cog, double &max_radius) const
 
virtual void local_coordinate_of_node (const unsigned &j, Vector< double > &s) const
 
virtual void local_fraction_of_node (const unsigned &j, Vector< double > &s_fraction)
 
virtual double local_one_d_fraction_of_node (const unsigned &n1d, const unsigned &i)
 
MacroElementmacro_elem_pt ()
 Access function to pointer to macro element. More...
 
void get_x (const Vector< double > &s, Vector< double > &x) const
 
void get_x (const unsigned &t, const Vector< double > &s, Vector< double > &x)
 
virtual void get_x_from_macro_element (const Vector< double > &s, Vector< double > &x) const
 
virtual void get_x_from_macro_element (const unsigned &t, const Vector< double > &s, Vector< double > &x)
 
virtual void set_integration_scheme (Integral *const &integral_pt)
 Set the spatial integration scheme. More...
 
Integral *const & integral_pt () const
 Return the pointer to the integration scheme (const version) More...
 
virtual void shape (const Vector< double > &s, Shape &psi) const =0
 
virtual void shape_at_knot (const unsigned &ipt, Shape &psi) const
 
virtual void dshape_local (const Vector< double > &s, Shape &psi, DShape &dpsids) const
 
virtual void dshape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids) const
 
virtual void d2shape_local (const Vector< double > &s, Shape &psi, DShape &dpsids, DShape &d2psids) const
 
virtual void d2shape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids, DShape &d2psids) const
 
virtual double J_eulerian (const Vector< double > &s) const
 
virtual double J_eulerian_at_knot (const unsigned &ipt) const
 
void check_J_eulerian_at_knots (bool &passed) const
 
void check_jacobian (const double &jacobian) const
 
double dshape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx) const
 
virtual double dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx) const
 
virtual double dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsi, DenseMatrix< double > &djacobian_dX, RankFourTensor< double > &d_dpsidx_dX) const
 
double d2shape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx, DShape &d2psidx) const
 
virtual double d2shape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, DShape &d2psidx) const
 
virtual void assign_nodal_local_eqn_numbers (const bool &store_local_dof_pt)
 
virtual void describe_nodal_local_dofs (std::ostream &out, const std::string &current_string) const
 
Node *& node_pt (const unsigned &n)
 Return a pointer to the local node n. More...
 
Node *const & node_pt (const unsigned &n) const
 Return a pointer to the local node n (const version) More...
 
unsigned nnode () const
 Return the number of nodes. More...
 
virtual unsigned nnode_1d () const
 
double raw_nodal_position (const unsigned &n, const unsigned &i) const
 
double raw_nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const
 
double raw_dnodal_position_dt (const unsigned &n, const unsigned &i) const
 
double raw_dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const
 
double raw_nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const
 
double raw_nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const
 
double raw_dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const
 
double raw_dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const
 
double nodal_position (const unsigned &n, const unsigned &i) const
 
double nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const
 
double dnodal_position_dt (const unsigned &n, const unsigned &i) const
 Return the i-th component of nodal velocity: dx/dt at local node n. More...
 
double dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const
 
double nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const
 
double nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const
 
double dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const
 
double dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const
 
virtual void get_dresidual_dnodal_coordinates (RankThreeTensor< double > &dresidual_dnodal_coordinates)
 
virtual void disable_ALE ()
 
virtual void enable_ALE ()
 
virtual unsigned required_nvalue (const unsigned &n) const
 
unsigned nnodal_position_type () const
 
bool has_hanging_nodes () const
 
unsigned nodal_dimension () const
 Return the required Eulerian dimension of the nodes in this element. More...
 
int get_node_number (Node *const &node_pt) const
 
virtual Nodeget_node_at_local_coordinate (const Vector< double > &s) const
 
double raw_nodal_value (const unsigned &n, const unsigned &i) const
 
double raw_nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const
 
double nodal_value (const unsigned &n, const unsigned &i) const
 
double nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const
 
unsigned dim () const
 
virtual ElementGeometry::ElementGeometry element_geometry () const
 Return the geometry type of the element (either Q or T usually). More...
 
virtual double interpolated_x (const Vector< double > &s, const unsigned &i) const
 Return FE interpolated coordinate x[i] at local coordinate s. More...
 
virtual double interpolated_x (const unsigned &t, const Vector< double > &s, const unsigned &i) const
 
virtual void interpolated_x (const Vector< double > &s, Vector< double > &x) const
 Return FE interpolated position x[] at local coordinate s as Vector. More...
 
virtual void interpolated_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) const
 
virtual double interpolated_dxdt (const Vector< double > &s, const unsigned &i, const unsigned &t)
 
virtual void interpolated_dxdt (const Vector< double > &s, const unsigned &t, Vector< double > &dxdt)
 
void position (const Vector< double > &zeta, Vector< double > &r) const
 
void position (const unsigned &t, const Vector< double > &zeta, Vector< double > &r) const
 
void dposition_dt (const Vector< double > &zeta, const unsigned &t, Vector< double > &drdt)
 
void interpolated_zeta (const Vector< double > &s, Vector< double > &zeta) const
 
void locate_zeta (const Vector< double > &zeta, GeomObject *&geom_object_pt, Vector< double > &s, const bool &use_coordinate_as_initial_guess=false)
 
virtual void node_update ()
 
virtual void identify_field_data_for_interactions (std::set< std::pair< Data *, unsigned >> &paired_field_data)
 
virtual double s_min () const
 Min value of local coordinate. More...
 
virtual double s_max () const
 Max. value of local coordinate. More...
 
double size () const
 
virtual double compute_physical_size () const
 
virtual void point_output_data (const Vector< double > &s, Vector< double > &data)
 
void point_output (std::ostream &outfile, const Vector< double > &s)
 
virtual unsigned nplot_points_paraview (const unsigned &nplot) const
 
virtual unsigned nsub_elements_paraview (const unsigned &nplot) const
 
void output_paraview (std::ofstream &file_out, const unsigned &nplot) const
 
virtual void write_paraview_output_offset_information (std::ofstream &file_out, const unsigned &nplot, unsigned &counter) const
 
virtual void write_paraview_type (std::ofstream &file_out, const unsigned &nplot) const
 
virtual void write_paraview_offsets (std::ofstream &file_out, const unsigned &nplot, unsigned &offset_sum) const
 
virtual unsigned nscalar_paraview () const
 
virtual void scalar_value_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot) const
 
virtual void scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const
 
virtual void scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const
 
virtual std::string scalar_name_paraview (const unsigned &i) const
 
virtual void output (const unsigned &t, std::ostream &outfile, const unsigned &n_plot) const
 
virtual void output_fct (std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt)
 Output an exact solution over the element. More...
 
virtual void output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt)
 Output a time-dependent exact solution over the element. More...
 
virtual void output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, const SolutionFunctorBase &exact_soln) const
 Output a time-dependent exact solution over the element. More...
 
virtual void get_s_plot (const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const
 
virtual std::string tecplot_zone_string (const unsigned &nplot) const
 
virtual void write_tecplot_zone_footer (std::ostream &outfile, const unsigned &nplot) const
 
virtual void write_tecplot_zone_footer (FILE *file_pt, const unsigned &nplot) const
 
virtual unsigned nplot_points (const unsigned &nplot) const
 
virtual void compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)
 Calculate the norm of the error and that of the exact solution. More...
 
virtual void compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
 Calculate the norm of the error and that of the exact solution. More...
 
virtual void compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)
 
virtual void compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)
 
virtual void compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)
 
virtual void compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
 
virtual void compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)
 
virtual void compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)
 
virtual void compute_abs_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error)
 
void integrate_fct (FiniteElement::SteadyExactSolutionFctPt integrand_fct_pt, Vector< double > &integral)
 Integrate Vector-valued function over element. More...
 
void integrate_fct (FiniteElement::UnsteadyExactSolutionFctPt integrand_fct_pt, const double &time, Vector< double > &integral)
 Integrate Vector-valued time-dep function over element. More...
 
virtual void build_face_element (const int &face_index, FaceElement *face_element_pt)
 
virtual unsigned self_test ()
 
virtual unsigned get_bulk_node_number (const int &face_index, const unsigned &i) const
 
virtual int face_outer_unit_normal_sign (const int &face_index) const
 Get the sign of the outer unit normal on the face given by face_index. More...
 
virtual unsigned nnode_on_face () const
 
void face_node_number_error_check (const unsigned &i) const
 Range check for face node numbers. More...
 
virtual CoordinateMappingFctPt face_to_bulk_coordinate_fct_pt (const int &face_index) const
 
virtual BulkCoordinateDerivativesFctPt bulk_coordinate_derivatives_fct_pt (const int &face_index) const
 
- Public Member Functions inherited from oomph::GeneralisedElement
 GeneralisedElement ()
 Constructor: Initialise all pointers and all values to zero. More...
 
virtual ~GeneralisedElement ()
 Virtual destructor to clean up any memory allocated by the object. More...
 
 GeneralisedElement (const GeneralisedElement &)=delete
 Broken copy constructor. More...
 
void operator= (const GeneralisedElement &)=delete
 Broken assignment operator. More...
 
Data *& internal_data_pt (const unsigned &i)
 Return a pointer to i-th internal data object. More...
 
Data *const & internal_data_pt (const unsigned &i) const
 Return a pointer to i-th internal data object (const version) More...
 
Data *& external_data_pt (const unsigned &i)
 Return a pointer to i-th external data object. More...
 
Data *const & external_data_pt (const unsigned &i) const
 Return a pointer to i-th external data object (const version) More...
 
unsigned long eqn_number (const unsigned &ieqn_local) const
 
int local_eqn_number (const unsigned long &ieqn_global) const
 
unsigned add_external_data (Data *const &data_pt, const bool &fd=true)
 
bool external_data_fd (const unsigned &i) const
 
void exclude_external_data_fd (const unsigned &i)
 
void include_external_data_fd (const unsigned &i)
 
void flush_external_data ()
 Flush all external data. More...
 
void flush_external_data (Data *const &data_pt)
 Flush the object addressed by data_pt from the external data array. More...
 
unsigned ninternal_data () const
 Return the number of internal data objects. More...
 
unsigned nexternal_data () const
 Return the number of external data objects. More...
 
unsigned ndof () const
 Return the number of equations/dofs in the element. More...
 
void dof_vector (const unsigned &t, Vector< double > &dof)
 Return the vector of dof values at time level t. More...
 
void dof_pt_vector (Vector< double * > &dof_pt)
 Return the vector of pointers to dof values. More...
 
void set_internal_data_time_stepper (const unsigned &i, TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)
 
void assign_internal_eqn_numbers (unsigned long &global_number, Vector< double * > &Dof_pt)
 
void describe_dofs (std::ostream &out, const std::string &current_string) const
 
void add_internal_value_pt_to_map (std::map< unsigned, double * > &map_of_value_pt)
 
virtual void assign_local_eqn_numbers (const bool &store_local_dof_pt)
 
virtual void complete_setup_of_dependencies ()
 
virtual void get_residuals (Vector< double > &residuals)
 
virtual void get_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)
 
virtual void get_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)
 
virtual void get_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)
 
virtual void get_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)
 
virtual void get_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)
 
virtual void get_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)
 
virtual void get_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)
 
virtual void get_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)
 
virtual void get_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)
 
virtual void compute_norm (Vector< double > &norm)
 
- Public Member Functions inherited from oomph::GeomObject
 GeomObject ()
 Default constructor. More...
 
 GeomObject (const unsigned &ndim)
 
 GeomObject (const unsigned &nlagrangian, const unsigned &ndim)
 
 GeomObject (const unsigned &nlagrangian, const unsigned &ndim, TimeStepper *time_stepper_pt)
 
 GeomObject (const GeomObject &dummy)=delete
 Broken copy constructor. More...
 
void operator= (const GeomObject &)=delete
 Broken assignment operator. More...
 
virtual ~GeomObject ()
 (Empty) destructor More...
 
unsigned nlagrangian () const
 Access function to # of Lagrangian coordinates. More...
 
unsigned ndim () const
 Access function to # of Eulerian coordinates. More...
 
void set_nlagrangian_and_ndim (const unsigned &n_lagrangian, const unsigned &n_dim)
 Set # of Lagrangian and Eulerian coordinates. More...
 
TimeStepper *& time_stepper_pt ()
 
TimeSteppertime_stepper_pt () const
 
virtual void position (const double &t, const Vector< double > &zeta, Vector< double > &r) const
 
virtual void dposition (const Vector< double > &zeta, DenseMatrix< double > &drdzeta) const
 
virtual void d2position (const Vector< double > &zeta, RankThreeTensor< double > &ddrdzeta) const
 
virtual void d2position (const Vector< double > &zeta, Vector< double > &r, DenseMatrix< double > &drdzeta, RankThreeTensor< double > &ddrdzeta) const
 
- Public Member Functions inherited from oomph::ElementWithZ2ErrorEstimator
 ElementWithZ2ErrorEstimator ()
 Default empty constructor. More...
 
 ElementWithZ2ErrorEstimator (const ElementWithZ2ErrorEstimator &)=delete
 Broken copy constructor. More...
 
void operator= (const ElementWithZ2ErrorEstimator &)=delete
 Broken assignment operator. More...
 
virtual unsigned ncompound_fluxes ()
 
virtual void compute_exact_Z2_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_flux_pt, double &error, double &norm)
 
virtual void get_Z2_compound_flux_indices (Vector< unsigned > &flux_index)
 
virtual double geometric_jacobian (const Vector< double > &x)
 

Additional Inherited Members

- Public Types inherited from oomph::PVDEquationsBase< DIM >
typedef void(* IsotropicGrowthFctPt) (const Vector< double > &xi, double &gamma)
 
typedef double(* PrestressFctPt) (const unsigned &i, const unsigned &j, const Vector< double > &xi)
 
typedef void(* BodyForceFctPt) (const double &t, const Vector< double > &xi, Vector< double > &b)
 
- Public Types inherited from oomph::SolidFiniteElement
typedef double(* MultiplierFctPt) (const Vector< double > &xi)
 
- Public Types inherited from oomph::FiniteElement
typedef void(* SteadyExactSolutionFctPt) (const Vector< double > &, Vector< double > &)
 
typedef void(* UnsteadyExactSolutionFctPt) (const double &, const Vector< double > &, Vector< double > &)
 
- Static Public Member Functions inherited from oomph::PVDEquationsBase< DIM >
static void pin_redundant_nodal_solid_pressures (const Vector< GeneralisedElement * > &element_pt)
 
static void unpin_all_solid_pressure_dofs (const Vector< GeneralisedElement * > &element_pt)
 Unpin all pressure dofs in elements listed in vector. More...
 
- Static Public Attributes inherited from oomph::FiniteElement
static double Tolerance_for_singular_jacobian = 1.0e-16
 Tolerance below which the jacobian is considered singular. More...
 
static bool Accept_negative_jacobian = false
 
static bool Suppress_output_while_checking_for_inverted_elements
 
- Static Public Attributes inherited from oomph::GeneralisedElement
static bool Suppress_warning_about_repeated_internal_data
 
static bool Suppress_warning_about_repeated_external_data = true
 
static double Default_fd_jacobian_step = 1.0e-8
 
- Protected Member Functions inherited from oomph::PVDEquations< DIM >
virtual void fill_in_generic_contribution_to_residuals_pvd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)
 
void get_stress (const DenseMatrix< double > &g, const DenseMatrix< double > &G, DenseMatrix< double > &sigma)
 
void get_d_stress_dG_upper (const DenseMatrix< double > &g, const DenseMatrix< double > &G, const DenseMatrix< double > &sigma, RankFourTensor< double > &d_sigma_dG)
 
- Protected Member Functions inherited from oomph::SolidFiniteElement
void fill_in_generic_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)
 
void set_nnodal_lagrangian_type (const unsigned &nlagrangian_type)
 
virtual double local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
double local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const
 
virtual double local_to_lagrangian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
virtual void assign_solid_local_eqn_numbers (const bool &store_local_dof)
 Assign local equation numbers for the solid equations in the element. More...
 
void describe_solid_local_dofs (std::ostream &out, const std::string &current_string) const
 Classifies dofs locally for solid specific aspects. More...
 
virtual void fill_in_jacobian_from_solid_position_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)
 
void fill_in_jacobian_from_solid_position_by_fd (DenseMatrix< double > &jacobian)
 
virtual void update_before_solid_position_fd ()
 
virtual void reset_after_solid_position_fd ()
 
virtual void update_in_solid_position_fd (const unsigned &i)
 
virtual void reset_in_solid_position_fd (const unsigned &i)
 
- Protected Member Functions inherited from oomph::FiniteElement
virtual void assemble_local_to_eulerian_jacobian (const DShape &dpsids, DenseMatrix< double > &jacobian) const
 
virtual void assemble_local_to_eulerian_jacobian2 (const DShape &d2psids, DenseMatrix< double > &jacobian2) const
 
virtual void assemble_eulerian_base_vectors (const DShape &dpsids, DenseMatrix< double > &interpolated_G) const
 
template<unsigned DIM>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
virtual double invert_jacobian_mapping (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
virtual double local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
double local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const
 
virtual double local_to_eulerian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
virtual void dJ_eulerian_dnodal_coordinates (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<unsigned DIM>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
virtual void d_dshape_eulerian_dnodal_coordinates (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<unsigned DIM>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
virtual void transform_derivatives (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const
 
void transform_derivatives_diagonal (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const
 
virtual void transform_second_derivatives (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<unsigned DIM>
void transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<unsigned DIM>
void transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
virtual void fill_in_jacobian_from_nodal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)
 
void fill_in_jacobian_from_nodal_by_fd (DenseMatrix< double > &jacobian)
 
virtual void update_before_nodal_fd ()
 
virtual void reset_after_nodal_fd ()
 
virtual void update_in_nodal_fd (const unsigned &i)
 
virtual void reset_in_nodal_fd (const unsigned &i)
 
template<>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 Zero-d specialisation of function to calculate inverse of jacobian mapping. More...
 
template<>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 One-d specialisation of function to calculate inverse of jacobian mapping. More...
 
template<>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 Two-d specialisation of function to calculate inverse of jacobian mapping. More...
 
template<>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
template<>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<>
void transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<>
void transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<>
void transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<>
void transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
- Protected Member Functions inherited from oomph::GeneralisedElement
unsigned add_internal_data (Data *const &data_pt, const bool &fd=true)
 
bool internal_data_fd (const unsigned &i) const
 
void exclude_internal_data_fd (const unsigned &i)
 
void include_internal_data_fd (const unsigned &i)
 
void clear_global_eqn_numbers ()
 
void add_global_eqn_numbers (std::deque< unsigned long > const &global_eqn_numbers, std::deque< double * > const &global_dof_pt)
 
virtual void assign_internal_and_external_local_eqn_numbers (const bool &store_local_dof_pt)
 
virtual void assign_additional_local_eqn_numbers ()
 
int internal_local_eqn (const unsigned &i, const unsigned &j) const
 
int external_local_eqn (const unsigned &i, const unsigned &j)
 
void fill_in_jacobian_from_internal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
 
void fill_in_jacobian_from_internal_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
 
void fill_in_jacobian_from_external_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
 
void fill_in_jacobian_from_external_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
 
virtual void update_before_internal_fd ()
 
virtual void reset_after_internal_fd ()
 
virtual void update_in_internal_fd (const unsigned &i)
 
virtual void reset_in_internal_fd (const unsigned &i)
 
virtual void update_before_external_fd ()
 
virtual void reset_after_external_fd ()
 
virtual void update_in_external_fd (const unsigned &i)
 
virtual void reset_in_external_fd (const unsigned &i)
 
virtual void fill_in_contribution_to_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)
 
virtual void fill_in_contribution_to_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)
 
virtual void fill_in_contribution_to_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)
 
virtual void fill_in_contribution_to_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)
 
virtual void fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)
 
virtual void fill_in_contribution_to_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)
 
virtual void fill_in_contribution_to_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)
 
virtual void fill_in_contribution_to_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)
 
- Protected Attributes inherited from oomph::PVDEquationsBase< DIM >
IsotropicGrowthFctPt Isotropic_growth_fct_pt
 Pointer to isotropic growth function. More...
 
PrestressFctPt Prestress_fct_pt
 Pointer to prestress function. More...
 
ConstitutiveLawConstitutive_law_pt
 Pointer to the constitutive law. More...
 
doubleLambda_sq_pt
 Timescale ratio (non-dim. density) More...
 
bool Unsteady
 Flag that switches inertia on/off. More...
 
BodyForceFctPt Body_force_fct_pt
 Pointer to body force function. More...
 
bool Evaluate_jacobian_by_fd
 Use FD to evaluate Jacobian. More...
 
- Protected Attributes inherited from oomph::SolidFiniteElement
MacroElementUndeformed_macro_elem_pt
 Pointer to the element's "undeformed" macro element (NULL by default) More...
 
SolidInitialConditionSolid_ic_pt
 Pointer to object that specifies the initial condition. More...
 
bool Solve_for_consistent_newmark_accel_flag
 
- Protected Attributes inherited from oomph::FiniteElement
MacroElementMacro_elem_pt
 Pointer to the element's macro element (NULL by default) More...
 
- Protected Attributes inherited from oomph::GeomObject
unsigned NLagrangian
 Number of Lagrangian (intrinsic) coordinates. More...
 
unsigned Ndim
 Number of Eulerian coordinates. More...
 
TimeStepperGeom_object_time_stepper_pt
 
- Static Protected Attributes inherited from oomph::PVDEquationsBase< DIM >
static double Default_lambda_sq_value = 1.0
 Static default value for timescale ratio (1.0 – for natural scaling) More...
 
- Static Protected Attributes inherited from oomph::FiniteElement
static const unsigned Default_Initial_Nvalue = 0
 Default value for the number of values at a node. More...
 
static const double Node_location_tolerance = 1.0e-14
 
static const unsigned N2deriv [] = {0, 1, 3, 6}
 
- Static Protected Attributes inherited from oomph::GeneralisedElement
static DenseMatrix< doubleDummy_matrix
 
static std::deque< double * > Dof_pt_deque
 

Detailed Description

template<unsigned DIM, unsigned NNODE_1D>
class oomph::TPVDElement< DIM, NNODE_1D >

/////////////////////////////////////////////////////////////////// /////////////////////////////////////////////////////////////////// /////////////////////////////////////////////////////////////////// An Element that solves the solid mechanics equations, based on the principle of virtual displacements in Cartesian coordinates, using SolidTElements for the interpolation of the variable positions.

Constructor & Destructor Documentation

◆ TPVDElement()

template<unsigned DIM, unsigned NNODE_1D>
oomph::TPVDElement< DIM, NNODE_1D >::TPVDElement ( )
inline

Constructor, there are no internal data points.

1759 : SolidTElement<DIM, NNODE_1D>(), PVDEquations<DIM>() {}

Member Function Documentation

◆ describe_local_dofs()

template<unsigned DIM, unsigned NNODE_1D>
void oomph::SolidFiniteElement::describe_local_dofs

Function to describe the local dofs of the element. The ostream specifies the output stream to which the description is written; the string stores the currently assembled output that is ultimately written to the output stream by Data::desribe_dofs(...); it is typically built up incrementally as we descend through the call hierarchy of this function when called from Problem::describe_dofs(...)

6516  {
6517  // Call the standard finite element description.
6518  FiniteElement::describe_local_dofs(out, current_string);
6519  describe_solid_local_dofs(out, current_string);
6520  }
virtual void describe_local_dofs(std::ostream &out, const std::string &current_string) const
Definition: elements.cc:1709
void describe_solid_local_dofs(std::ostream &out, const std::string &current_string) const
Classifies dofs locally for solid specific aspects.
Definition: elements.cc:6874
std::ofstream out("Result.txt")

References el_dim, boost::multiprecision::fabs(), i, oomph::FiniteElement::local_coordinate_of_node(), n, oomph::FiniteElement::node_pt(), and s.

◆ get_Z2_flux()

template<unsigned DIM, unsigned NNODE_1D>
void oomph::TPVDElement< DIM, NNODE_1D >::get_Z2_flux ( const Vector< double > &  s,
Vector< double > &  flux 
)
inlinevirtual

Get 'flux' for Z2 error recovery: Upper triangular entries in strain tensor.

Implements oomph::ElementWithZ2ErrorEstimator.

Reimplemented in oomph::PseudoSolidNodeUpdateElement< TTaylorHoodElement< 2 >, TPVDElement< 2, 3 > >, oomph::PseudoSolidNodeUpdateElement< GeneralisedNewtonianAxisymmetricTTaylorHoodElement, TPVDElement< 2, 3 > >, oomph::PseudoSolidNodeUpdateElement< AxisymmetricTTaylorHoodElement, TPVDElement< 2, 3 > >, and oomph::PseudoSolidNodeUpdateElement< GeneralisedNewtonianTTaylorHoodElement< 2 >, TPVDElement< 2, 3 > >.

1825  {
1826 #ifdef PARANOID
1827  unsigned num_entries = DIM + ((DIM * DIM) - DIM) / 2;
1828  if (flux.size() != num_entries)
1829  {
1830  std::ostringstream error_message;
1831  error_message << "The flux vector has the wrong number of entries, "
1832  << flux.size() << ", whereas it should be " << num_entries
1833  << std::endl;
1834  throw OomphLibError(error_message.str(),
1837  }
1838 #endif
1839 
1840  // Get strain matrix
1841  DenseMatrix<double> strain(DIM);
1842  this->get_strain(s, strain);
1843 
1844  // Pack into flux Vector
1845  unsigned icount = 0;
1846 
1847  // Start with diagonal terms
1848  for (unsigned i = 0; i < DIM; i++)
1849  {
1850  flux[icount] = strain(i, i);
1851  icount++;
1852  }
1853  // Off diagonals row by row
1854  for (unsigned i = 0; i < DIM; i++)
1855  {
1856  for (unsigned j = i + 1; j < DIM; j++)
1857  {
1858  flux[icount] = strain(i, j);
1859  icount++;
1860  }
1861  }
1862  }
int i
Definition: BiCGSTAB_step_by_step.cpp:9
void get_strain(const Vector< double > &s, DenseMatrix< double > &strain) const
Return the strain tensor.
Definition: solid_elements.cc:47
#define DIM
Definition: linearised_navier_stokes_elements.h:44
void flux(const double &time, const Vector< double > &x, double &flux)
Get flux applied along boundary x=0.
Definition: pretend_melt.cc:59
#define OOMPH_EXCEPTION_LOCATION
Definition: oomph_definitions.h:61
#define OOMPH_CURRENT_FUNCTION
Definition: oomph_definitions.h:86
std::ptrdiff_t j
Definition: tut_arithmetic_redux_minmax.cpp:2

References DIM, ProblemParameters::flux(), oomph::PVDEquationsBase< DIM >::get_strain(), i, j, OOMPH_CURRENT_FUNCTION, and OOMPH_EXCEPTION_LOCATION.

◆ nrecovery_order()

◆ num_Z2_flux_terms()

template<unsigned DIM, unsigned NNODE_1D>
unsigned oomph::TPVDElement< DIM, NNODE_1D >::num_Z2_flux_terms ( )
inlinevirtual

◆ nvertex_node()

◆ output() [1/4]

◆ output() [2/4]

◆ output() [3/4]

◆ output() [4/4]

◆ vertex_node_pt()


The documentation for this class was generated from the following file: