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| TPVDElementWithContinuousPressure () |
| Constructor. More...
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| TPVDElementWithContinuousPressure (const TPVDElementWithContinuousPressure< DIM > &dummy)=delete |
| Broken copy constructor. More...
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int | solid_p_nodal_index () const |
| Broken assignment operator. More...
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virtual unsigned | required_nvalue (const unsigned &n) const |
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double | solid_p (const unsigned &l) |
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void | set_solid_p (const unsigned &l, const double &p_value) |
| Set the l-th solid pressure value to p_value. More...
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unsigned | npres_solid () const |
| Return number of pressure values. More...
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void | fix_solid_pressure (const unsigned &l, const double &pvalue) |
| Fix the pressure dof l to be the value pvalue. More...
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void | output (std::ostream &outfile) |
| Generic FiniteElement output function. More...
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void | output (std::ostream &outfile, const unsigned &n_plot) |
| PVDEquationsWithPressure output function. More...
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void | output (FILE *file_pt) |
| C-style generic FiniteElement output function. More...
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void | output (FILE *file_pt, const unsigned &n_plot) |
| C-style PVDEquationsWithPressure output function. More...
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unsigned | nrecovery_order () |
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unsigned | nvertex_node () const |
| Number of vertex nodes in the element. More...
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Node * | vertex_node_pt (const unsigned &j) const |
| Pointer to the j-th vertex node in the element. More...
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unsigned | num_Z2_flux_terms () |
| Number of 'flux' terms for Z2 error estimation. More...
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void | get_Z2_flux (const Vector< double > &s, Vector< double > &flux) |
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unsigned | npres_solid () const |
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unsigned | npres_solid () const |
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| PVDEquationsWithPressure () |
| Constructor, by default the element is NOT incompressible. More...
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void | get_stress (const Vector< double > &s, DenseMatrix< double > &sigma) |
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bool | is_incompressible () const |
| Return whether the material is incompressible. More...
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void | set_incompressible () |
| Set the material to be incompressible. More...
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void | set_compressible () |
| Set the material to be compressible. More...
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void | fill_in_contribution_to_residuals (Vector< double > &residuals) |
| Fill in the residuals. More...
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void | fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
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void | fill_in_contribution_to_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix) |
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double | interpolated_solid_p (const Vector< double > &s) |
| Return the interpolated_solid_pressure. More...
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void | extended_output (std::ostream &outfile, const unsigned &n_plot) |
| Output: x,y,[z],xi0,xi1,[xi2],gamma strain and stress components. More...
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void | get_mass_matrix_diagonal (Vector< double > &mass_diag) |
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unsigned | ndof_types () const |
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void | get_dof_numbers_for_unknowns (std::list< std::pair< unsigned long, unsigned >> &dof_lookup_list) const |
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| PVDEquationsBase () |
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ConstitutiveLaw *& | constitutive_law_pt () |
| Return the constitutive law pointer. More...
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const double & | lambda_sq () const |
| Access function for timescale ratio (nondim density) More...
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double *& | lambda_sq_pt () |
| Access function for pointer to timescale ratio (nondim density) More...
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IsotropicGrowthFctPt & | isotropic_growth_fct_pt () |
| Access function: Pointer to isotropic growth function. More...
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PrestressFctPt & | prestress_fct_pt () |
| Access function: Pointer to pre-stress function. More...
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IsotropicGrowthFctPt | isotropic_growth_fct_pt () const |
| Access function: Pointer to isotropic growth function (const version) More...
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BodyForceFctPt & | body_force_fct_pt () |
| Access function: Pointer to body force function. More...
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BodyForceFctPt | body_force_fct_pt () const |
| Access function: Pointer to body force function (const version) More...
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void | enable_inertia () |
| Switch on solid inertia. More...
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void | disable_inertia () |
| Switch off solid inertia. More...
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bool | is_inertia_enabled () const |
| Access function to flag that switches inertia on/off (const version) More...
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virtual void | pin_elemental_redundant_nodal_solid_pressures () |
| Pin the element's redundant solid pressures (needed for refinement) More...
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void | get_strain (const Vector< double > &s, DenseMatrix< double > &strain) const |
| Return the strain tensor. More...
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void | get_energy (double &pot_en, double &kin_en) |
| Get potential (strain) and kinetic energy. More...
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void | get_deformed_covariant_basis_vectors (const Vector< double > &s, DenseMatrix< double > &def_covariant_basis) |
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void | get_principal_stress (const Vector< double > &s, DenseMatrix< double > &principal_stress_vector, Vector< double > &principal_stress) |
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virtual void | get_isotropic_growth (const unsigned &ipt, const Vector< double > &s, const Vector< double > &xi, double &gamma) const |
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void | body_force (const Vector< double > &xi, Vector< double > &b) const |
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void | enable_evaluate_jacobian_by_fd () |
| Set Jacobian to be evaluated by FD? Else: Analytically. More...
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void | disable_evaluate_jacobian_by_fd () |
| Set Jacobian to be evaluated analytically Else: by FD. More...
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bool | is_jacobian_evaluated_by_fd () const |
| Return the flag indicating whether the jacobian is evaluated by fd. More...
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double | prestress (const unsigned &i, const unsigned &j, const Vector< double > xi) |
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void | set_lagrangian_dimension (const unsigned &lagrangian_dimension) |
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virtual bool | has_internal_solid_data () |
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| SolidFiniteElement () |
| Constructor: Set defaults. More...
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virtual | ~SolidFiniteElement () |
| Destructor to clean up any allocated memory. More...
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| SolidFiniteElement (const SolidFiniteElement &)=delete |
| Broken copy constructor. More...
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unsigned | ngeom_data () const |
| Broken assignment operator. More...
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Data * | geom_data_pt (const unsigned &j) |
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void | identify_geometric_data (std::set< Data * > &geometric_data_pt) |
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double | zeta_nodal (const unsigned &n, const unsigned &k, const unsigned &i) const |
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virtual void | get_x_and_xi (const Vector< double > &s, Vector< double > &x_fe, Vector< double > &x, Vector< double > &xi_fe, Vector< double > &xi) const |
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virtual void | set_macro_elem_pt (MacroElement *macro_elem_pt) |
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virtual void | set_macro_elem_pt (MacroElement *macro_elem_pt, MacroElement *undeformed_macro_elem_pt) |
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void | set_undeformed_macro_elem_pt (MacroElement *undeformed_macro_elem_pt) |
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MacroElement * | undeformed_macro_elem_pt () |
| Access function to pointer to "undeformed" macro element. More...
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double | dshape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi) const |
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virtual double | dshape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi) const |
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double | d2shape_lagrangian (const Vector< double > &s, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const |
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virtual double | d2shape_lagrangian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidxi, DShape &d2psidxi) const |
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unsigned | lagrangian_dimension () const |
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unsigned | nnodal_lagrangian_type () const |
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Node * | construct_node (const unsigned &n) |
| Construct the local node n and return a pointer to it. More...
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Node * | construct_node (const unsigned &n, TimeStepper *const &time_stepper_pt) |
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Node * | construct_boundary_node (const unsigned &n) |
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Node * | construct_boundary_node (const unsigned &n, TimeStepper *const &time_stepper_pt) |
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virtual void | assign_all_generic_local_eqn_numbers (const bool &store_local_dof_pt) |
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void | describe_local_dofs (std::ostream &out, const std::string ¤t_string) const |
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double | raw_lagrangian_position (const unsigned &n, const unsigned &i) const |
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double | raw_lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const |
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double | lagrangian_position (const unsigned &n, const unsigned &i) const |
| Return i-th Lagrangian coordinate at local node n. More...
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double | lagrangian_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const |
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virtual double | interpolated_xi (const Vector< double > &s, const unsigned &i) const |
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virtual void | interpolated_xi (const Vector< double > &s, Vector< double > &xi) const |
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virtual void | interpolated_dxids (const Vector< double > &s, DenseMatrix< double > &dxids) const |
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virtual void | J_lagrangian (const Vector< double > &s) const |
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virtual double | J_lagrangian_at_knot (const unsigned &ipt) const |
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SolidInitialCondition *& | solid_ic_pt () |
| Pointer to object that describes the initial condition. More...
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void | enable_solve_for_consistent_newmark_accel () |
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void | disable_solve_for_consistent_newmark_accel () |
| Set to reset the problem being solved to be the standard problem. More...
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MultiplierFctPt & | multiplier_fct_pt () |
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MultiplierFctPt | multiplier_fct_pt () const |
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virtual void | get_residuals_for_solid_ic (Vector< double > &residuals) |
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void | fill_in_residuals_for_solid_ic (Vector< double > &residuals) |
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void | fill_in_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
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void | fill_in_jacobian_for_newmark_accel (DenseMatrix< double > &jacobian) |
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void | compute_norm (double &el_norm) |
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int | position_local_eqn (const unsigned &n, const unsigned &k, const unsigned &j) const |
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void | set_dimension (const unsigned &dim) |
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void | set_nodal_dimension (const unsigned &nodal_dim) |
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void | set_nnodal_position_type (const unsigned &nposition_type) |
| Set the number of types required to interpolate the coordinate. More...
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void | set_n_node (const unsigned &n) |
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int | nodal_local_eqn (const unsigned &n, const unsigned &i) const |
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double | dJ_eulerian_at_knot (const unsigned &ipt, Shape &psi, DenseMatrix< double > &djacobian_dX) const |
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| FiniteElement () |
| Constructor. More...
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virtual | ~FiniteElement () |
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| FiniteElement (const FiniteElement &)=delete |
| Broken copy constructor. More...
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virtual bool | local_coord_is_valid (const Vector< double > &s) |
| Broken assignment operator. More...
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virtual void | move_local_coord_back_into_element (Vector< double > &s) const |
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void | get_centre_of_gravity_and_max_radius_in_terms_of_zeta (Vector< double > &cog, double &max_radius) const |
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virtual void | local_coordinate_of_node (const unsigned &j, Vector< double > &s) const |
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virtual void | local_fraction_of_node (const unsigned &j, Vector< double > &s_fraction) |
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virtual double | local_one_d_fraction_of_node (const unsigned &n1d, const unsigned &i) |
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MacroElement * | macro_elem_pt () |
| Access function to pointer to macro element. More...
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void | get_x (const Vector< double > &s, Vector< double > &x) const |
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void | get_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) |
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virtual void | get_x_from_macro_element (const Vector< double > &s, Vector< double > &x) const |
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virtual void | get_x_from_macro_element (const unsigned &t, const Vector< double > &s, Vector< double > &x) |
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virtual void | set_integration_scheme (Integral *const &integral_pt) |
| Set the spatial integration scheme. More...
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Integral *const & | integral_pt () const |
| Return the pointer to the integration scheme (const version) More...
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virtual void | shape (const Vector< double > &s, Shape &psi) const =0 |
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virtual void | shape_at_knot (const unsigned &ipt, Shape &psi) const |
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virtual void | dshape_local (const Vector< double > &s, Shape &psi, DShape &dpsids) const |
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virtual void | dshape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids) const |
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virtual void | d2shape_local (const Vector< double > &s, Shape &psi, DShape &dpsids, DShape &d2psids) const |
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virtual void | d2shape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids, DShape &d2psids) const |
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virtual double | J_eulerian (const Vector< double > &s) const |
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virtual double | J_eulerian_at_knot (const unsigned &ipt) const |
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void | check_J_eulerian_at_knots (bool &passed) const |
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void | check_jacobian (const double &jacobian) const |
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double | dshape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx) const |
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virtual double | dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx) const |
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virtual double | dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsi, DenseMatrix< double > &djacobian_dX, RankFourTensor< double > &d_dpsidx_dX) const |
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double | d2shape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx, DShape &d2psidx) const |
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virtual double | d2shape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, DShape &d2psidx) const |
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virtual void | assign_nodal_local_eqn_numbers (const bool &store_local_dof_pt) |
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virtual void | describe_nodal_local_dofs (std::ostream &out, const std::string ¤t_string) const |
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Node *& | node_pt (const unsigned &n) |
| Return a pointer to the local node n. More...
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Node *const & | node_pt (const unsigned &n) const |
| Return a pointer to the local node n (const version) More...
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unsigned | nnode () const |
| Return the number of nodes. More...
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virtual unsigned | nnode_1d () const |
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double | raw_nodal_position (const unsigned &n, const unsigned &i) const |
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double | raw_nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const |
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double | raw_dnodal_position_dt (const unsigned &n, const unsigned &i) const |
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double | raw_dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const |
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double | raw_nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const |
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double | raw_nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const |
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double | raw_dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const |
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double | raw_dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const |
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double | nodal_position (const unsigned &n, const unsigned &i) const |
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double | nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const |
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double | dnodal_position_dt (const unsigned &n, const unsigned &i) const |
| Return the i-th component of nodal velocity: dx/dt at local node n. More...
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double | dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const |
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double | nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const |
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double | nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const |
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double | dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const |
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double | dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const |
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virtual void | get_dresidual_dnodal_coordinates (RankThreeTensor< double > &dresidual_dnodal_coordinates) |
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virtual void | disable_ALE () |
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virtual void | enable_ALE () |
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unsigned | nnodal_position_type () const |
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bool | has_hanging_nodes () const |
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unsigned | nodal_dimension () const |
| Return the required Eulerian dimension of the nodes in this element. More...
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int | get_node_number (Node *const &node_pt) const |
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virtual Node * | get_node_at_local_coordinate (const Vector< double > &s) const |
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double | raw_nodal_value (const unsigned &n, const unsigned &i) const |
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double | raw_nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const |
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double | nodal_value (const unsigned &n, const unsigned &i) const |
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double | nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const |
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unsigned | dim () const |
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virtual ElementGeometry::ElementGeometry | element_geometry () const |
| Return the geometry type of the element (either Q or T usually). More...
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virtual double | interpolated_x (const Vector< double > &s, const unsigned &i) const |
| Return FE interpolated coordinate x[i] at local coordinate s. More...
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virtual double | interpolated_x (const unsigned &t, const Vector< double > &s, const unsigned &i) const |
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virtual void | interpolated_x (const Vector< double > &s, Vector< double > &x) const |
| Return FE interpolated position x[] at local coordinate s as Vector. More...
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virtual void | interpolated_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) const |
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virtual double | interpolated_dxdt (const Vector< double > &s, const unsigned &i, const unsigned &t) |
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virtual void | interpolated_dxdt (const Vector< double > &s, const unsigned &t, Vector< double > &dxdt) |
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void | position (const Vector< double > &zeta, Vector< double > &r) const |
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void | position (const unsigned &t, const Vector< double > &zeta, Vector< double > &r) const |
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void | dposition_dt (const Vector< double > &zeta, const unsigned &t, Vector< double > &drdt) |
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void | interpolated_zeta (const Vector< double > &s, Vector< double > &zeta) const |
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void | locate_zeta (const Vector< double > &zeta, GeomObject *&geom_object_pt, Vector< double > &s, const bool &use_coordinate_as_initial_guess=false) |
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virtual void | node_update () |
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virtual void | identify_field_data_for_interactions (std::set< std::pair< Data *, unsigned >> &paired_field_data) |
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virtual double | s_min () const |
| Min value of local coordinate. More...
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virtual double | s_max () const |
| Max. value of local coordinate. More...
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double | size () const |
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virtual double | compute_physical_size () const |
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virtual void | point_output_data (const Vector< double > &s, Vector< double > &data) |
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void | point_output (std::ostream &outfile, const Vector< double > &s) |
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virtual unsigned | nplot_points_paraview (const unsigned &nplot) const |
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virtual unsigned | nsub_elements_paraview (const unsigned &nplot) const |
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void | output_paraview (std::ofstream &file_out, const unsigned &nplot) const |
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virtual void | write_paraview_output_offset_information (std::ofstream &file_out, const unsigned &nplot, unsigned &counter) const |
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virtual void | write_paraview_type (std::ofstream &file_out, const unsigned &nplot) const |
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virtual void | write_paraview_offsets (std::ofstream &file_out, const unsigned &nplot, unsigned &offset_sum) const |
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virtual unsigned | nscalar_paraview () const |
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virtual void | scalar_value_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot) const |
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virtual void | scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const |
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virtual void | scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const |
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virtual std::string | scalar_name_paraview (const unsigned &i) const |
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virtual void | output (const unsigned &t, std::ostream &outfile, const unsigned &n_plot) const |
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virtual void | output_fct (std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) |
| Output an exact solution over the element. More...
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virtual void | output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) |
| Output a time-dependent exact solution over the element. More...
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virtual void | output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, const SolutionFunctorBase &exact_soln) const |
| Output a time-dependent exact solution over the element. More...
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virtual void | get_s_plot (const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const |
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virtual std::string | tecplot_zone_string (const unsigned &nplot) const |
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virtual void | write_tecplot_zone_footer (std::ostream &outfile, const unsigned &nplot) const |
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virtual void | write_tecplot_zone_footer (FILE *file_pt, const unsigned &nplot) const |
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virtual unsigned | nplot_points (const unsigned &nplot) const |
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virtual void | compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm) |
| Calculate the norm of the error and that of the exact solution. More...
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virtual void | compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm) |
| Calculate the norm of the error and that of the exact solution. More...
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virtual void | compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm) |
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virtual void | compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm) |
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virtual void | compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm) |
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virtual void | compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm) |
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virtual void | compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm) |
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virtual void | compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm) |
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virtual void | compute_abs_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error) |
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void | integrate_fct (FiniteElement::SteadyExactSolutionFctPt integrand_fct_pt, Vector< double > &integral) |
| Integrate Vector-valued function over element. More...
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void | integrate_fct (FiniteElement::UnsteadyExactSolutionFctPt integrand_fct_pt, const double &time, Vector< double > &integral) |
| Integrate Vector-valued time-dep function over element. More...
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virtual void | build_face_element (const int &face_index, FaceElement *face_element_pt) |
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virtual unsigned | self_test () |
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virtual unsigned | get_bulk_node_number (const int &face_index, const unsigned &i) const |
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virtual int | face_outer_unit_normal_sign (const int &face_index) const |
| Get the sign of the outer unit normal on the face given by face_index. More...
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virtual unsigned | nnode_on_face () const |
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void | face_node_number_error_check (const unsigned &i) const |
| Range check for face node numbers. More...
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virtual CoordinateMappingFctPt | face_to_bulk_coordinate_fct_pt (const int &face_index) const |
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virtual BulkCoordinateDerivativesFctPt | bulk_coordinate_derivatives_fct_pt (const int &face_index) const |
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| GeneralisedElement () |
| Constructor: Initialise all pointers and all values to zero. More...
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virtual | ~GeneralisedElement () |
| Virtual destructor to clean up any memory allocated by the object. More...
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| GeneralisedElement (const GeneralisedElement &)=delete |
| Broken copy constructor. More...
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void | operator= (const GeneralisedElement &)=delete |
| Broken assignment operator. More...
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Data *& | internal_data_pt (const unsigned &i) |
| Return a pointer to i-th internal data object. More...
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Data *const & | internal_data_pt (const unsigned &i) const |
| Return a pointer to i-th internal data object (const version) More...
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Data *& | external_data_pt (const unsigned &i) |
| Return a pointer to i-th external data object. More...
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Data *const & | external_data_pt (const unsigned &i) const |
| Return a pointer to i-th external data object (const version) More...
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unsigned long | eqn_number (const unsigned &ieqn_local) const |
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int | local_eqn_number (const unsigned long &ieqn_global) const |
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unsigned | add_external_data (Data *const &data_pt, const bool &fd=true) |
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bool | external_data_fd (const unsigned &i) const |
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void | exclude_external_data_fd (const unsigned &i) |
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void | include_external_data_fd (const unsigned &i) |
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void | flush_external_data () |
| Flush all external data. More...
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void | flush_external_data (Data *const &data_pt) |
| Flush the object addressed by data_pt from the external data array. More...
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unsigned | ninternal_data () const |
| Return the number of internal data objects. More...
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unsigned | nexternal_data () const |
| Return the number of external data objects. More...
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unsigned | ndof () const |
| Return the number of equations/dofs in the element. More...
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void | dof_vector (const unsigned &t, Vector< double > &dof) |
| Return the vector of dof values at time level t. More...
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void | dof_pt_vector (Vector< double * > &dof_pt) |
| Return the vector of pointers to dof values. More...
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void | set_internal_data_time_stepper (const unsigned &i, TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data) |
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void | assign_internal_eqn_numbers (unsigned long &global_number, Vector< double * > &Dof_pt) |
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void | describe_dofs (std::ostream &out, const std::string ¤t_string) const |
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void | add_internal_value_pt_to_map (std::map< unsigned, double * > &map_of_value_pt) |
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virtual void | assign_local_eqn_numbers (const bool &store_local_dof_pt) |
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virtual void | complete_setup_of_dependencies () |
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virtual void | get_residuals (Vector< double > &residuals) |
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virtual void | get_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
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virtual void | get_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix) |
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virtual void | get_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix) |
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virtual void | get_dresiduals_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam) |
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virtual void | get_djacobian_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam) |
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virtual void | get_djacobian_and_dmass_matrix_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam) |
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virtual void | get_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product) |
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virtual void | get_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product) |
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virtual void | get_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector) |
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virtual void | compute_norm (Vector< double > &norm) |
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| GeomObject () |
| Default constructor. More...
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| GeomObject (const unsigned &ndim) |
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| GeomObject (const unsigned &nlagrangian, const unsigned &ndim) |
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| GeomObject (const unsigned &nlagrangian, const unsigned &ndim, TimeStepper *time_stepper_pt) |
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| GeomObject (const GeomObject &dummy)=delete |
| Broken copy constructor. More...
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void | operator= (const GeomObject &)=delete |
| Broken assignment operator. More...
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virtual | ~GeomObject () |
| (Empty) destructor More...
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unsigned | nlagrangian () const |
| Access function to # of Lagrangian coordinates. More...
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unsigned | ndim () const |
| Access function to # of Eulerian coordinates. More...
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void | set_nlagrangian_and_ndim (const unsigned &n_lagrangian, const unsigned &n_dim) |
| Set # of Lagrangian and Eulerian coordinates. More...
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TimeStepper *& | time_stepper_pt () |
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TimeStepper * | time_stepper_pt () const |
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virtual void | position (const double &t, const Vector< double > &zeta, Vector< double > &r) const |
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virtual void | dposition (const Vector< double > &zeta, DenseMatrix< double > &drdzeta) const |
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virtual void | d2position (const Vector< double > &zeta, RankThreeTensor< double > &ddrdzeta) const |
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virtual void | d2position (const Vector< double > &zeta, Vector< double > &r, DenseMatrix< double > &drdzeta, RankThreeTensor< double > &ddrdzeta) const |
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| SolidElementWithDiagonalMassMatrix () |
| Empty constructor. More...
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virtual | ~SolidElementWithDiagonalMassMatrix () |
| Virtual destructor. More...
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| SolidElementWithDiagonalMassMatrix (const SolidElementWithDiagonalMassMatrix &)=delete |
| Broken copy constructor. More...
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void | operator= (const SolidElementWithDiagonalMassMatrix &)=delete |
| Broken assignment operator. More...
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| ElementWithZ2ErrorEstimator () |
| Default empty constructor. More...
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| ElementWithZ2ErrorEstimator (const ElementWithZ2ErrorEstimator &)=delete |
| Broken copy constructor. More...
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void | operator= (const ElementWithZ2ErrorEstimator &)=delete |
| Broken assignment operator. More...
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virtual unsigned | ncompound_fluxes () |
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virtual void | compute_exact_Z2_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_flux_pt, double &error, double &norm) |
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virtual void | get_Z2_compound_flux_indices (Vector< unsigned > &flux_index) |
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virtual double | geometric_jacobian (const Vector< double > &x) |
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int | solid_p_local_eqn (const unsigned &i) const |
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void | solid_pshape (const Vector< double > &s, Shape &psi) const |
| Pressure shape functions at local coordinate s. More...
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const unsigned | Pconv [3] |
| Data for the pressure conversion array. More...
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const unsigned | Pconv [4] |
| Data for the pressure conversion array. More...
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void | solid_pshape (const Vector< double > &s, Shape &psi) const |
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void | solid_pshape (const Vector< double > &s, Shape &psi) const |
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void | get_stress (const DenseMatrix< double > &g, const DenseMatrix< double > &G, DenseMatrix< double > &sigma_dev, DenseMatrix< double > &Gcontra, double &gen_dil, double &inv_kappa) |
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void | get_d_stress_dG_upper (const DenseMatrix< double > &g, const DenseMatrix< double > &G, const DenseMatrix< double > &sigma, const double &gen_dil, const double &inv_kappa, const double &interpolated_solid_p, RankFourTensor< double > &d_sigma_dG, DenseMatrix< double > &d_gen_dil_dG) |
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void | solid_pshape_at_knot (const unsigned &ipt, Shape &psi) const |
| Return the stored solid shape functions at the knots. More...
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virtual void | fill_in_generic_residual_contribution_pvd_with_pressure (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix, const unsigned &flag) |
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void | get_stress (const DenseMatrix< double > &g, const DenseMatrix< double > &G, DenseMatrix< double > &sigma_dev, DenseMatrix< double > &Gcontra, double &detG) |
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void | get_d_stress_dG_upper (const DenseMatrix< double > &g, const DenseMatrix< double > &G, const DenseMatrix< double > &sigma, const double &detG, const double &interpolated_solid_p, RankFourTensor< double > &d_sigma_dG, DenseMatrix< double > &d_detG_dG) |
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void | fill_in_generic_jacobian_for_solid_ic (Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag) |
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void | set_nnodal_lagrangian_type (const unsigned &nlagrangian_type) |
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virtual double | local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
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double | local_to_lagrangian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const |
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virtual double | local_to_lagrangian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
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virtual void | assign_solid_local_eqn_numbers (const bool &store_local_dof) |
| Assign local equation numbers for the solid equations in the element. More...
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void | describe_solid_local_dofs (std::ostream &out, const std::string ¤t_string) const |
| Classifies dofs locally for solid specific aspects. More...
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virtual void | fill_in_jacobian_from_solid_position_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
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void | fill_in_jacobian_from_solid_position_by_fd (DenseMatrix< double > &jacobian) |
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virtual void | update_before_solid_position_fd () |
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virtual void | reset_after_solid_position_fd () |
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virtual void | update_in_solid_position_fd (const unsigned &i) |
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virtual void | reset_in_solid_position_fd (const unsigned &i) |
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virtual void | assemble_local_to_eulerian_jacobian (const DShape &dpsids, DenseMatrix< double > &jacobian) const |
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virtual void | assemble_local_to_eulerian_jacobian2 (const DShape &d2psids, DenseMatrix< double > &jacobian2) const |
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virtual void | assemble_eulerian_base_vectors (const DShape &dpsids, DenseMatrix< double > &interpolated_G) const |
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template<unsigned DIM> |
double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
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virtual double | invert_jacobian_mapping (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
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virtual double | local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
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double | local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const |
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virtual double | local_to_eulerian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
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virtual void | dJ_eulerian_dnodal_coordinates (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
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template<unsigned DIM> |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
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virtual void | d_dshape_eulerian_dnodal_coordinates (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
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template<unsigned DIM> |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
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virtual void | transform_derivatives (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const |
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void | transform_derivatives_diagonal (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const |
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virtual void | transform_second_derivatives (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
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template<unsigned DIM> |
void | transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
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template<unsigned DIM> |
void | transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
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virtual void | fill_in_jacobian_from_nodal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian) |
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void | fill_in_jacobian_from_nodal_by_fd (DenseMatrix< double > &jacobian) |
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virtual void | update_before_nodal_fd () |
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virtual void | reset_after_nodal_fd () |
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virtual void | update_in_nodal_fd (const unsigned &i) |
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virtual void | reset_in_nodal_fd (const unsigned &i) |
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template<> |
double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
| Zero-d specialisation of function to calculate inverse of jacobian mapping. More...
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template<> |
double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
| One-d specialisation of function to calculate inverse of jacobian mapping. More...
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template<> |
double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
| Two-d specialisation of function to calculate inverse of jacobian mapping. More...
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template<> |
double | invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const |
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template<> |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
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template<> |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
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template<> |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
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template<> |
void | dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const |
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template<> |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
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template<> |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
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template<> |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
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template<> |
void | d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const |
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template<> |
void | transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
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template<> |
void | transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
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template<> |
void | transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
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template<> |
void | transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const |
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unsigned | add_internal_data (Data *const &data_pt, const bool &fd=true) |
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bool | internal_data_fd (const unsigned &i) const |
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void | exclude_internal_data_fd (const unsigned &i) |
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void | include_internal_data_fd (const unsigned &i) |
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void | clear_global_eqn_numbers () |
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void | add_global_eqn_numbers (std::deque< unsigned long > const &global_eqn_numbers, std::deque< double * > const &global_dof_pt) |
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virtual void | assign_internal_and_external_local_eqn_numbers (const bool &store_local_dof_pt) |
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virtual void | assign_additional_local_eqn_numbers () |
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int | internal_local_eqn (const unsigned &i, const unsigned &j) const |
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int | external_local_eqn (const unsigned &i, const unsigned &j) |
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void | fill_in_jacobian_from_internal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false) |
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void | fill_in_jacobian_from_internal_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false) |
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void | fill_in_jacobian_from_external_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false) |
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void | fill_in_jacobian_from_external_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false) |
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virtual void | update_before_internal_fd () |
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virtual void | reset_after_internal_fd () |
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virtual void | update_in_internal_fd (const unsigned &i) |
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virtual void | reset_in_internal_fd (const unsigned &i) |
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virtual void | update_before_external_fd () |
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virtual void | reset_after_external_fd () |
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virtual void | update_in_external_fd (const unsigned &i) |
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virtual void | reset_in_external_fd (const unsigned &i) |
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virtual void | fill_in_contribution_to_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix) |
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virtual void | fill_in_contribution_to_dresiduals_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam) |
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virtual void | fill_in_contribution_to_djacobian_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam) |
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virtual void | fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter (double *const ¶meter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam) |
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virtual void | fill_in_contribution_to_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product) |
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virtual void | fill_in_contribution_to_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product) |
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virtual void | fill_in_contribution_to_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector) |
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