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oomph::TAxisymmetricPoroelasticityElement< ORDER > Class Template Reference

#include <Taxisym_poroelasticity_elements.h>

+ Inheritance diagram for oomph::TAxisymmetricPoroelasticityElement< ORDER >:

Public Member Functions

 TAxisymmetricPoroelasticityElement ()
 Constructor. More...
 
 ~TAxisymmetricPoroelasticityElement ()
 Destructor. More...
 
unsigned required_nvalue (const unsigned &n) const
 Number of values required at node n. More...
 
unsigned face_index_of_edge (const unsigned &j) const
 Return the face index associated with specified edge. More...
 
void face_local_coordinate_of_flux_interpolation_point (const unsigned &edge, const unsigned &n, Vector< double > &s) const
 
unsigned face_index_of_q_edge_basis_fct (const unsigned &j) const
 Return the face index associated with j-th edge flux degree of freedom. More...
 
unsigned u_index_axisym_poroelasticity (const unsigned &j) const
 
int q_edge_local_eqn (const unsigned &j) const
 Return the equation number of the j-th edge (flux) degree of freedom. More...
 
int q_internal_local_eqn (const unsigned &j) const
 Return the equation number of the j-th internal degree of freedom. More...
 
Vector< Data * > q_edge_data_pt () const
 
Data * q_internal_data_pt () const
 Return pointer to the Data object that stores the internal flux values. More...
 
unsigned q_internal_index () const
 
unsigned q_edge_index (const unsigned &j) const
 Return the nodal index at which the jth edge unknown is stored. More...
 
unsigned q_edge_node_number (const unsigned &j) const
 Return the number of the node where the jth edge unknown is stored. More...
 
Node * edge_flux_node_pt (const unsigned &edge)
 Get pointer to node that stores the edge flux dofs for specified edge. More...
 
double q_edge (const unsigned &j) const
 Return the values of the j-th edge (flux) degree of freedom. More...
 
double q_edge (const unsigned &t, const unsigned &j) const
 
double q_internal (const unsigned &j) const
 Return the values of the internal degree of freedom. More...
 
double q_internal (const unsigned &t, const unsigned &j) const
 
void pin_q_edge_value (const unsigned &j, const double &value)
 Pin the j-th edge (flux) degree of freedom and set it to specified value. More...
 
void set_q_edge (const unsigned &j, const double &value)
 Set the values of the j-th edge (flux) degree of freedom. More...
 
void set_q_edge (const unsigned &t, const unsigned &j, const double &value)
 
void set_q_internal (const unsigned &j, const double &value)
 Set the values of the j-th internal degree of freedom. More...
 
void set_q_internal (const unsigned &t, const unsigned &j, const double &value)
 
unsigned nq_basis_edge () const
 Return the number of edge basis functions for flux q. More...
 
unsigned nq_basis_internal () const
 Return the number of internal basis functions for flux q. More...
 
void get_q_basis_local (const Vector< double > &s, Shape &q_basis) const
 Returns the local form of the q basis at local coordinate s. More...
 
void get_div_q_basis_local (const Vector< double > &s, Shape &div_q_basis_ds) const
 
unsigned nedge_flux_interpolation_point () const
 
Vector< double > edge_flux_interpolation_point (const unsigned &edge, const unsigned &j) const
 
void edge_flux_interpolation_point_global (const unsigned &edge, const unsigned &j, Vector< double > &x) const
 
void pin_q_internal_value (const unsigned &j, const double &q)
 Pin the jth internal q value and set it to specified value. More...
 
int p_local_eqn (const unsigned &j) const
 Return the equation number of the j-th pressure degree of freedom. More...
 
double p_value (const unsigned &j) const
 Return the jth pressure value. More...
 
unsigned np_basis () const
 Return the total number of pressure basis functions. More...
 
void get_p_basis (const Vector< double > &s, Shape &p_basis) const
 Return the pressure basis. More...
 
void pin_p_value (const unsigned &j, const double &p)
 Pin the jth pressure value and set to specified value. More...
 
Data * p_data_pt () const
 Return pointer to the Data object that stores the pressure values. More...
 
void set_p_value (const unsigned &j, const double &value)
 Set the jth pressure value. More...
 
void scale_basis (Shape &basis) const
 Scale the edge basis to allow arbitrary edge mappings. More...
 
const short & sign_edge (const unsigned &n) const
 Accessor for the unit normal sign of edge n (const version) More...
 
short & sign_edge (const unsigned &n)
 Accessor for the unit normal sign of edge n. More...
 
void output (std::ostream &outfile)
 Output with default number of plot points. More...
 
void output (std::ostream &outfile, const unsigned &Nplot)
 
unsigned nvertex_node () const
 Number of vertex nodes in the element. More...
 
Node * vertex_node_pt (const unsigned &j) const
 Pointer to the j-th vertex node in the element. More...
 
unsigned nrecovery_order ()
 Recovery order for Z2 error estimator. More...
 
 TAxisymmetricPoroelasticityElement ()
 
 ~TAxisymmetricPoroelasticityElement ()
 Destructor. More...
 
unsigned nq_basis_edge () const
 Return the number of edge basis functions for flux q. More...
 
unsigned nq_basis_internal () const
 Return the number of internal basis functions for flux q. More...
 
void get_q_basis_local (const Vector< double > &s, Shape &q_basis) const
 Compute the local form of the q basis at local coordinate s. More...
 
void get_div_q_basis_local (const Vector< double > &s, Shape &div_q_basis_ds) const
 Compute the local form of the q basis and dbasis/ds at local coordinate s. More...
 
unsigned nedge_flux_interpolation_point () const
 
unsigned np_basis () const
 Return the total number of pressure basis functions. More...
 
void get_p_basis (const Vector< double > &s, Shape &p_basis) const
 Return the pressure basis. More...
 
 TAxisymmetricPoroelasticityElement ()
 
 ~TAxisymmetricPoroelasticityElement ()
 Destructor. More...
 
unsigned nq_basis_edge () const
 Return the number of edge basis functions for flux q. More...
 
unsigned nq_basis_internal () const
 Return the number of internal basis functions for flux q. More...
 
void get_q_basis_local (const Vector< double > &s, Shape &q_basis) const
 Returns the local form of the q basis at local coordinate s. More...
 
void get_div_q_basis_local (const Vector< double > &s, Shape &div_q_basis_ds) const
 Returns the local form of the q basis and dbasis/ds at local coordinate s. More...
 
unsigned nedge_flux_interpolation_point () const
 
unsigned np_basis () const
 Return the total number of pressure basis functions. More...
 
void get_p_basis (const Vector< double > &s, Shape &p_basis) const
 Return the pressure basis. More...
 
- Public Member Functions inherited from oomph::TElement< 2, 3 >
const unsigned Node_on_face [3][2]
 Assign the nodal translation schemes. More...
 
const unsigned Node_on_face [3][3]
 
const unsigned Node_on_face [3][4]
 
const unsigned Node_on_face [4][3]
 Assign the nodal translation scheme for linear elements. More...
 
const unsigned Node_on_face [4][6]
 Assign the nodal translation scheme for quadratic elements. More...
 
- Public Member Functions inherited from oomph::AxisymmetricPoroelasticityEquations
 AxisymmetricPoroelasticityEquations ()
 Constructor. More...
 
const double & youngs_modulus () const
 
double *& youngs_modulus_pt ()
 
const double & nu () const
 Access function for Poisson's ratio. More...
 
double *& nu_pt ()
 Access function for pointer to Poisson's ratio. More...
 
const double & lambda_sq () const
 Access function for timescale ratio (nondim density) More...
 
double *& lambda_sq_pt ()
 Access function for pointer to timescale ratio (nondim density) More...
 
const double & density_ratio () const
 Access function for the density ratio (fluid to solid) More...
 
double *& density_ratio_pt ()
 Access function for pointer to the density ratio (fluid to solid) More...
 
const double & permeability () const
 Access function for the nondim permeability. More...
 
double *& permeability_pt ()
 Access function for pointer to the nondim permeability. More...
 
const double & permeability_ratio () const
 
double *& permeability_ratio_pt ()
 
const double & alpha () const
 Access function for alpha, the Biot parameter. More...
 
double *& alpha_pt ()
 Access function for pointer to alpha, the Biot parameter. More...
 
const double & porosity () const
 Access function for the porosity. More...
 
double *& porosity_pt ()
 Access function for pointer to the porosity. More...
 
SourceFctPt & solid_body_force_fct_pt ()
 Access function: Pointer to solid body force function. More...
 
SourceFctPt solid_body_force_fct_pt () const
 Access function: Pointer to solid body force function (const version) More...
 
SourceFctPt & fluid_body_force_fct_pt ()
 Access function: Pointer to fluid force function. More...
 
SourceFctPt fluid_body_force_fct_pt () const
 Access function: Pointer to fluid force function (const version) More...
 
MassSourceFctPt & mass_source_fct_pt ()
 Access function: Pointer to mass source function. More...
 
MassSourceFctPt mass_source_fct_pt () const
 Access function: Pointer to mass source function (const version) More...
 
void solid_body_force (const double &time, const Vector< double > &x, Vector< double > &b) const
 
void fluid_body_force (const double &time, const Vector< double > &x, Vector< double > &b) const
 
void mass_source (const double &time, const Vector< double > &x, double &b) const
 
virtual unsigned nq_basis () const
 Return the total number of computational basis functions for q. More...
 
void get_q_basis (const Vector< double > &s, Shape &q_basis) const
 Compute the transformed basis at local coordinate s. More...
 
double transform_basis (const Vector< double > &s, const Shape &q_basis_local, Shape &psi, DShape &dpsi, Shape &q_basis) const
 
double transform_basis (const Vector< double > &s, const Shape &q_basis_local, Shape &psi, Shape &q_basis) const
 
void fill_in_contribution_to_residuals (Vector< double > &residuals)
 Fill in contribution to residuals for the Darcy equations. More...
 
void fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)
 Fill in the Jacobian matrix for the Newton method. More...
 
double interpolated_div_du_dt (const Vector< double > &s, Vector< double > &div_dudt_components) const
 
double interpolated_div_u (const Vector< double > &s, Vector< double > &div_u_components) const
 
void interpolated_u (const Vector< double > &s, Vector< double > &disp) const
 Calculate the FE representation of u. More...
 
double interpolated_u (const Vector< double > &s, const unsigned &i) const
 Calculate the FE representation of the i-th component of u. More...
 
double interpolated_u (const unsigned &t, const Vector< double > &s, const unsigned &i) const
 
void interpolated_du_dt (const Vector< double > &s, Vector< double > &du_dt) const
 Calculate the FE representation of du_dt. More...
 
void interpolated_q (const Vector< double > &s, Vector< double > &q) const
 Calculate the FE representation of q. More...
 
void interpolated_q (const unsigned &t, const Vector< double > &s, Vector< double > &q) const
 
double interpolated_q (const Vector< double > &s, const unsigned i) const
 Calculate the FE representation of the i-th component of q. More...
 
double interpolated_q (const unsigned &t, const Vector< double > &s, const unsigned i) const
 
void interpolated_div_q (const Vector< double > &s, double &div_q) const
 Calculate the FE representation of div u. More...
 
double interpolated_div_q (const Vector< double > &s) const
 Calculate the FE representation of div q and return it. More...
 
void interpolated_p (const Vector< double > &s, double &p) const
 Calculate the FE representation of p. More...
 
double interpolated_p (const Vector< double > &s) const
 Calculate the FE representation of p and return it. More...
 
double du_dt (const unsigned &n, const unsigned &i) const
 du/dt at local node n More...
 
double d2u_dt2 (const unsigned &n, const unsigned &i) const
 d^2u/dt^2 at local node n More...
 
double dq_edge_dt (const unsigned &n) const
 dq_edge/dt for the n-th edge degree of freedom More...
 
double dq_internal_dt (const unsigned &n) const
 dq_internal/dt for the n-th internal degree of freedom More...
 
void set_q_internal_timestepper (TimeStepper *const time_stepper_pt)
 Set the timestepper of the q internal data object. More...
 
bool darcy_is_switched_off ()
 Is Darcy flow switched off? More...
 
void switch_off_darcy ()
 Switch off Darcy flow. More...
 
unsigned self_test ()
 Self test. More...
 
unsigned nscalar_paraview () const
 
void scalar_value_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot) const
 
std::string scalar_name_paraview (const unsigned &i) const
 
void point_output_data (const Vector< double > &s, Vector< double > &data)
 
void output_with_projected_flux (std::ostream &outfile, const unsigned &nplot, const Vector< double > unit_normal)
 
void output_fct (std::ostream &outfile, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt)
 
void output_fct (std::ostream &outfile, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt)
 
void compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)
 
void compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)
 
unsigned num_Z2_flux_terms ()
 Number off flux terms for Z2 error estimator (use Darcy flux) More...
 
void get_Z2_flux (const Vector< double > &s, Vector< double > &flux)
 Z2 flux (use Darcy flux) More...
 
- Public Member Functions inherited from oomph::FiniteElement
void set_dimension (const unsigned &dim)
 
void set_nodal_dimension (const unsigned &nodal_dim)
 
void set_nnodal_position_type (const unsigned &nposition_type)
 Set the number of types required to interpolate the coordinate. More...
 
void set_n_node (const unsigned &n)
 
int nodal_local_eqn (const unsigned &n, const unsigned &i) const
 
double dJ_eulerian_at_knot (const unsigned &ipt, Shape &psi, DenseMatrix< double > &djacobian_dX) const
 
 FiniteElement ()
 Constructor. More...
 
virtual ~FiniteElement ()
 
 FiniteElement (const FiniteElement &)=delete
 Broken copy constructor. More...
 
virtual bool local_coord_is_valid (const Vector< double > &s)
 Broken assignment operator. More...
 
virtual void move_local_coord_back_into_element (Vector< double > &s) const
 
void get_centre_of_gravity_and_max_radius_in_terms_of_zeta (Vector< double > &cog, double &max_radius) const
 
virtual void local_coordinate_of_node (const unsigned &j, Vector< double > &s) const
 
virtual void local_fraction_of_node (const unsigned &j, Vector< double > &s_fraction)
 
virtual double local_one_d_fraction_of_node (const unsigned &n1d, const unsigned &i)
 
virtual void set_macro_elem_pt (MacroElement *macro_elem_pt)
 
MacroElement * macro_elem_pt ()
 Access function to pointer to macro element. More...
 
void get_x (const Vector< double > &s, Vector< double > &x) const
 
void get_x (const unsigned &t, const Vector< double > &s, Vector< double > &x)
 
virtual void get_x_from_macro_element (const Vector< double > &s, Vector< double > &x) const
 
virtual void get_x_from_macro_element (const unsigned &t, const Vector< double > &s, Vector< double > &x)
 
virtual void set_integration_scheme (Integral *const &integral_pt)
 Set the spatial integration scheme. More...
 
Integral *const & integral_pt () const
 Return the pointer to the integration scheme (const version) More...
 
virtual void shape (const Vector< double > &s, Shape &psi) const =0
 
virtual void shape_at_knot (const unsigned &ipt, Shape &psi) const
 
virtual void dshape_local (const Vector< double > &s, Shape &psi, DShape &dpsids) const
 
virtual void dshape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids) const
 
virtual void d2shape_local (const Vector< double > &s, Shape &psi, DShape &dpsids, DShape &d2psids) const
 
virtual void d2shape_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsids, DShape &d2psids) const
 
virtual double J_eulerian (const Vector< double > &s) const
 
virtual double J_eulerian_at_knot (const unsigned &ipt) const
 
void check_J_eulerian_at_knots (bool &passed) const
 
void check_jacobian (const double &jacobian) const
 
double dshape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx) const
 
virtual double dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx) const
 
virtual double dshape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsi, DenseMatrix< double > &djacobian_dX, RankFourTensor< double > &d_dpsidx_dX) const
 
double d2shape_eulerian (const Vector< double > &s, Shape &psi, DShape &dpsidx, DShape &d2psidx) const
 
virtual double d2shape_eulerian_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsidx, DShape &d2psidx) const
 
virtual void assign_nodal_local_eqn_numbers (const bool &store_local_dof_pt)
 
virtual void describe_local_dofs (std::ostream &out, const std::string &current_string) const
 
virtual void describe_nodal_local_dofs (std::ostream &out, const std::string &current_string) const
 
virtual void assign_all_generic_local_eqn_numbers (const bool &store_local_dof_pt)
 
Node *& node_pt (const unsigned &n)
 Return a pointer to the local node n. More...
 
Node *const & node_pt (const unsigned &n) const
 Return a pointer to the local node n (const version) More...
 
unsigned nnode () const
 Return the number of nodes. More...
 
virtual unsigned nnode_1d () const
 
double raw_nodal_position (const unsigned &n, const unsigned &i) const
 
double raw_nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const
 
double raw_dnodal_position_dt (const unsigned &n, const unsigned &i) const
 
double raw_dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const
 
double raw_nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const
 
double raw_nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const
 
double raw_dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const
 
double raw_dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const
 
double nodal_position (const unsigned &n, const unsigned &i) const
 
double nodal_position (const unsigned &t, const unsigned &n, const unsigned &i) const
 
double dnodal_position_dt (const unsigned &n, const unsigned &i) const
 Return the i-th component of nodal velocity: dx/dt at local node n. More...
 
double dnodal_position_dt (const unsigned &n, const unsigned &j, const unsigned &i) const
 
double nodal_position_gen (const unsigned &n, const unsigned &k, const unsigned &i) const
 
double nodal_position_gen (const unsigned &t, const unsigned &n, const unsigned &k, const unsigned &i) const
 
double dnodal_position_gen_dt (const unsigned &n, const unsigned &k, const unsigned &i) const
 
double dnodal_position_gen_dt (const unsigned &j, const unsigned &n, const unsigned &k, const unsigned &i) const
 
virtual void get_dresidual_dnodal_coordinates (RankThreeTensor< double > &dresidual_dnodal_coordinates)
 
virtual void disable_ALE ()
 
virtual void enable_ALE ()
 
unsigned nnodal_position_type () const
 
bool has_hanging_nodes () const
 
unsigned nodal_dimension () const
 Return the required Eulerian dimension of the nodes in this element. More...
 
virtual Node * construct_node (const unsigned &n)
 
virtual Node * construct_node (const unsigned &n, TimeStepper *const &time_stepper_pt)
 
virtual Node * construct_boundary_node (const unsigned &n)
 
virtual Node * construct_boundary_node (const unsigned &n, TimeStepper *const &time_stepper_pt)
 
int get_node_number (Node *const &node_pt) const
 
virtual Node * get_node_at_local_coordinate (const Vector< double > &s) const
 
double raw_nodal_value (const unsigned &n, const unsigned &i) const
 
double raw_nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const
 
double nodal_value (const unsigned &n, const unsigned &i) const
 
double nodal_value (const unsigned &t, const unsigned &n, const unsigned &i) const
 
unsigned dim () const
 
virtual ElementGeometry::ElementGeometry element_geometry () const
 Return the geometry type of the element (either Q or T usually). More...
 
virtual double interpolated_x (const Vector< double > &s, const unsigned &i) const
 Return FE interpolated coordinate x[i] at local coordinate s. More...
 
virtual double interpolated_x (const unsigned &t, const Vector< double > &s, const unsigned &i) const
 
virtual void interpolated_x (const Vector< double > &s, Vector< double > &x) const
 Return FE interpolated position x[] at local coordinate s as Vector. More...
 
virtual void interpolated_x (const unsigned &t, const Vector< double > &s, Vector< double > &x) const
 
virtual double interpolated_dxdt (const Vector< double > &s, const unsigned &i, const unsigned &t)
 
virtual void interpolated_dxdt (const Vector< double > &s, const unsigned &t, Vector< double > &dxdt)
 
unsigned ngeom_data () const
 
Data * geom_data_pt (const unsigned &j)
 
void position (const Vector< double > &zeta, Vector< double > &r) const
 
void position (const unsigned &t, const Vector< double > &zeta, Vector< double > &r) const
 
void dposition_dt (const Vector< double > &zeta, const unsigned &t, Vector< double > &drdt)
 
virtual double zeta_nodal (const unsigned &n, const unsigned &k, const unsigned &i) const
 
void interpolated_zeta (const Vector< double > &s, Vector< double > &zeta) const
 
void locate_zeta (const Vector< double > &zeta, GeomObject *&geom_object_pt, Vector< double > &s, const bool &use_coordinate_as_initial_guess=false)
 
virtual void node_update ()
 
virtual void identify_field_data_for_interactions (std::set< std::pair< Data *, unsigned >> &paired_field_data)
 
virtual void identify_geometric_data (std::set< Data * > &geometric_data_pt)
 
virtual double s_min () const
 Min value of local coordinate. More...
 
virtual double s_max () const
 Max. value of local coordinate. More...
 
double size () const
 
virtual double compute_physical_size () const
 
void point_output (std::ostream &outfile, const Vector< double > &s)
 
virtual unsigned nplot_points_paraview (const unsigned &nplot) const
 
virtual unsigned nsub_elements_paraview (const unsigned &nplot) const
 
void output_paraview (std::ofstream &file_out, const unsigned &nplot) const
 
virtual void write_paraview_output_offset_information (std::ofstream &file_out, const unsigned &nplot, unsigned &counter) const
 
virtual void write_paraview_type (std::ofstream &file_out, const unsigned &nplot) const
 
virtual void write_paraview_offsets (std::ofstream &file_out, const unsigned &nplot, unsigned &offset_sum) const
 
virtual void scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt) const
 
virtual void scalar_value_fct_paraview (std::ofstream &file_out, const unsigned &i, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const
 
virtual void output (const unsigned &t, std::ostream &outfile, const unsigned &n_plot) const
 
virtual void output (FILE *file_pt)
 
virtual void output (FILE *file_pt, const unsigned &n_plot)
 
virtual void output_fct (std::ostream &outfile, const unsigned &n_plot, const double &time, const SolutionFunctorBase &exact_soln) const
 Output a time-dependent exact solution over the element. More...
 
virtual void get_s_plot (const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const
 
virtual std::string tecplot_zone_string (const unsigned &nplot) const
 
virtual void write_tecplot_zone_footer (std::ostream &outfile, const unsigned &nplot) const
 
virtual void write_tecplot_zone_footer (FILE *file_pt, const unsigned &nplot) const
 
virtual unsigned nplot_points (const unsigned &nplot) const
 
virtual void compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)
 Calculate the norm of the error and that of the exact solution. More...
 
virtual void compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
 Calculate the norm of the error and that of the exact solution. More...
 
virtual void compute_error (FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, Vector< double > &error, Vector< double > &norm)
 
virtual void compute_error (FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)
 
virtual void compute_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)
 
virtual void compute_error (std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
 
virtual void compute_abs_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error)
 
void integrate_fct (FiniteElement::SteadyExactSolutionFctPt integrand_fct_pt, Vector< double > &integral)
 Integrate Vector-valued function over element. More...
 
void integrate_fct (FiniteElement::UnsteadyExactSolutionFctPt integrand_fct_pt, const double &time, Vector< double > &integral)
 Integrate Vector-valued time-dep function over element. More...
 
virtual void build_face_element (const int &face_index, FaceElement *face_element_pt)
 
virtual unsigned get_bulk_node_number (const int &face_index, const unsigned &i) const
 
virtual int face_outer_unit_normal_sign (const int &face_index) const
 Get the sign of the outer unit normal on the face given by face_index. More...
 
virtual unsigned nnode_on_face () const
 
void face_node_number_error_check (const unsigned &i) const
 Range check for face node numbers. More...
 
virtual CoordinateMappingFctPt face_to_bulk_coordinate_fct_pt (const int &face_index) const
 
virtual BulkCoordinateDerivativesFctPt bulk_coordinate_derivatives_fct_pt (const int &face_index) const
 
- Public Member Functions inherited from oomph::GeneralisedElement
 GeneralisedElement ()
 Constructor: Initialise all pointers and all values to zero. More...
 
virtual ~GeneralisedElement ()
 Virtual destructor to clean up any memory allocated by the object. More...
 
 GeneralisedElement (const GeneralisedElement &)=delete
 Broken copy constructor. More...
 
void operator= (const GeneralisedElement &)=delete
 Broken assignment operator. More...
 
Data *& internal_data_pt (const unsigned &i)
 Return a pointer to i-th internal data object. More...
 
Data *const & internal_data_pt (const unsigned &i) const
 Return a pointer to i-th internal data object (const version) More...
 
Data *& external_data_pt (const unsigned &i)
 Return a pointer to i-th external data object. More...
 
Data *const & external_data_pt (const unsigned &i) const
 Return a pointer to i-th external data object (const version) More...
 
unsigned long eqn_number (const unsigned &ieqn_local) const
 
int local_eqn_number (const unsigned long &ieqn_global) const
 
unsigned add_external_data (Data *const &data_pt, const bool &fd=true)
 
bool external_data_fd (const unsigned &i) const
 
void exclude_external_data_fd (const unsigned &i)
 
void include_external_data_fd (const unsigned &i)
 
void flush_external_data ()
 Flush all external data. More...
 
void flush_external_data (Data *const &data_pt)
 Flush the object addressed by data_pt from the external data array. More...
 
unsigned ninternal_data () const
 Return the number of internal data objects. More...
 
unsigned nexternal_data () const
 Return the number of external data objects. More...
 
unsigned ndof () const
 Return the number of equations/dofs in the element. More...
 
void dof_vector (const unsigned &t, Vector< double > &dof)
 Return the vector of dof values at time level t. More...
 
void dof_pt_vector (Vector< double * > &dof_pt)
 Return the vector of pointers to dof values. More...
 
void set_internal_data_time_stepper (const unsigned &i, TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data)
 
void assign_internal_eqn_numbers (unsigned long &global_number, Vector< double * > &Dof_pt)
 
void describe_dofs (std::ostream &out, const std::string &current_string) const
 
void add_internal_value_pt_to_map (std::map< unsigned, double * > &map_of_value_pt)
 
virtual void assign_local_eqn_numbers (const bool &store_local_dof_pt)
 
virtual void complete_setup_of_dependencies ()
 
virtual void get_residuals (Vector< double > &residuals)
 
virtual void get_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)
 
virtual void get_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)
 
virtual void get_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)
 
virtual void get_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)
 
virtual void get_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)
 
virtual void get_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)
 
virtual void get_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)
 
virtual void get_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)
 
virtual void get_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)
 
virtual void compute_norm (Vector< double > &norm)
 
virtual void compute_norm (double &norm)
 
virtual unsigned ndof_types () const
 
virtual void get_dof_numbers_for_unknowns (std::list< std::pair< unsigned long, unsigned >> &dof_lookup_list) const
 
- Public Member Functions inherited from oomph::GeomObject
 GeomObject ()
 Default constructor. More...
 
 GeomObject (const unsigned &ndim)
 
 GeomObject (const unsigned &nlagrangian, const unsigned &ndim)
 
 GeomObject (const unsigned &nlagrangian, const unsigned &ndim, TimeStepper *time_stepper_pt)
 
 GeomObject (const GeomObject &dummy)=delete
 Broken copy constructor. More...
 
void operator= (const GeomObject &)=delete
 Broken assignment operator. More...
 
virtual ~GeomObject ()
 (Empty) destructor More...
 
unsigned nlagrangian () const
 Access function to # of Lagrangian coordinates. More...
 
unsigned ndim () const
 Access function to # of Eulerian coordinates. More...
 
void set_nlagrangian_and_ndim (const unsigned &n_lagrangian, const unsigned &n_dim)
 Set # of Lagrangian and Eulerian coordinates. More...
 
TimeStepper *& time_stepper_pt ()
 
TimeStepper * time_stepper_pt () const
 
virtual void position (const double &t, const Vector< double > &zeta, Vector< double > &r) const
 
virtual void dposition (const Vector< double > &zeta, DenseMatrix< double > &drdzeta) const
 
virtual void d2position (const Vector< double > &zeta, RankThreeTensor< double > &ddrdzeta) const
 
virtual void d2position (const Vector< double > &zeta, Vector< double > &r, DenseMatrix< double > &drdzeta, RankThreeTensor< double > &ddrdzeta) const
 
- Public Member Functions inherited from oomph::ElementWithZ2ErrorEstimator
 ElementWithZ2ErrorEstimator ()
 Default empty constructor. More...
 
 ElementWithZ2ErrorEstimator (const ElementWithZ2ErrorEstimator &)=delete
 Broken copy constructor. More...
 
void operator= (const ElementWithZ2ErrorEstimator &)=delete
 Broken assignment operator. More...
 
virtual unsigned ncompound_fluxes ()
 
virtual void compute_exact_Z2_error (std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_flux_pt, double &error, double &norm)
 
virtual void get_Z2_compound_flux_indices (Vector< unsigned > &flux_index)
 
virtual double geometric_jacobian (const Vector< double > &x)
 

Protected Member Functions

double shape_basis_test_local (const Vector< double > &s, Shape &psi, DShape &dpsi, Shape &u_basis, Shape &u_test, DShape &du_basis_dx, DShape &du_test_dx, Shape &q_basis, Shape &q_test, Shape &p_basis, Shape &p_test, Shape &div_q_basis_ds, Shape &div_q_test_ds) const
 
double shape_basis_test_local_at_knot (const unsigned &ipt, Shape &psi, DShape &dpsi, Shape &u_basis, Shape &u_test, DShape &du_basis_dx, DShape &du_test_dx, Shape &q_basis, Shape &q_test, Shape &p_basis, Shape &p_test, Shape &div_q_basis_ds, Shape &div_q_test_ds) const
 
- Protected Member Functions inherited from oomph::AxisymmetricPoroelasticityEquations
virtual void fill_in_generic_residual_contribution (Vector< double > &residuals, DenseMatrix< double > &jacobian, bool flag)
 Fill in residuals and, if flag==true, jacobian. More...
 
- Protected Member Functions inherited from oomph::FiniteElement
virtual void assemble_local_to_eulerian_jacobian (const DShape &dpsids, DenseMatrix< double > &jacobian) const
 
virtual void assemble_local_to_eulerian_jacobian2 (const DShape &d2psids, DenseMatrix< double > &jacobian2) const
 
virtual void assemble_eulerian_base_vectors (const DShape &dpsids, DenseMatrix< double > &interpolated_G) const
 
template<unsigned DIM>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
virtual double invert_jacobian_mapping (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
virtual double local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
double local_to_eulerian_mapping (const DShape &dpsids, DenseMatrix< double > &inverse_jacobian) const
 
virtual double local_to_eulerian_mapping_diagonal (const DShape &dpsids, DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
virtual void dJ_eulerian_dnodal_coordinates (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<unsigned DIM>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
virtual void d_dshape_eulerian_dnodal_coordinates (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<unsigned DIM>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
virtual void transform_derivatives (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const
 
void transform_derivatives_diagonal (const DenseMatrix< double > &inverse_jacobian, DShape &dbasis) const
 
virtual void transform_second_derivatives (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<unsigned DIM>
void transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<unsigned DIM>
void transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
virtual void fill_in_jacobian_from_nodal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian)
 
void fill_in_jacobian_from_nodal_by_fd (DenseMatrix< double > &jacobian)
 
virtual void update_before_nodal_fd ()
 
virtual void reset_after_nodal_fd ()
 
virtual void update_in_nodal_fd (const unsigned &i)
 
virtual void reset_in_nodal_fd (const unsigned &i)
 
void fill_in_contribution_to_jacobian (Vector< double > &residuals, DenseMatrix< double > &jacobian)
 
template<>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 Zero-d specialisation of function to calculate inverse of jacobian mapping. More...
 
template<>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 One-d specialisation of function to calculate inverse of jacobian mapping. More...
 
template<>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 Two-d specialisation of function to calculate inverse of jacobian mapping. More...
 
template<>
double invert_jacobian (const DenseMatrix< double > &jacobian, DenseMatrix< double > &inverse_jacobian) const
 
template<>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<>
void dJ_eulerian_dnodal_coordinates_templated_helper (const DenseMatrix< double > &jacobian, const DShape &dpsids, DenseMatrix< double > &djacobian_dX) const
 
template<>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<>
void d_dshape_eulerian_dnodal_coordinates_templated_helper (const double &det_jacobian, const DenseMatrix< double > &jacobian, const DenseMatrix< double > &djacobian_dX, const DenseMatrix< double > &inverse_jacobian, const DShape &dpsids, RankFourTensor< double > &d_dpsidx_dX) const
 
template<>
void transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<>
void transform_second_derivatives_template (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<>
void transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
template<>
void transform_second_derivatives_diagonal (const DenseMatrix< double > &jacobian, const DenseMatrix< double > &inverse_jacobian, const DenseMatrix< double > &jacobian2, DShape &dbasis, DShape &d2basis) const
 
- Protected Member Functions inherited from oomph::GeneralisedElement
unsigned add_internal_data (Data *const &data_pt, const bool &fd=true)
 
bool internal_data_fd (const unsigned &i) const
 
void exclude_internal_data_fd (const unsigned &i)
 
void include_internal_data_fd (const unsigned &i)
 
void clear_global_eqn_numbers ()
 
void add_global_eqn_numbers (std::deque< unsigned long > const &global_eqn_numbers, std::deque< double * > const &global_dof_pt)
 
virtual void assign_internal_and_external_local_eqn_numbers (const bool &store_local_dof_pt)
 
virtual void assign_additional_local_eqn_numbers ()
 
int internal_local_eqn (const unsigned &i, const unsigned &j) const
 
int external_local_eqn (const unsigned &i, const unsigned &j)
 
void fill_in_jacobian_from_internal_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
 
void fill_in_jacobian_from_internal_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
 
void fill_in_jacobian_from_external_by_fd (Vector< double > &residuals, DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
 
void fill_in_jacobian_from_external_by_fd (DenseMatrix< double > &jacobian, const bool &fd_all_data=false)
 
virtual void update_before_internal_fd ()
 
virtual void reset_after_internal_fd ()
 
virtual void update_in_internal_fd (const unsigned &i)
 
virtual void reset_in_internal_fd (const unsigned &i)
 
virtual void update_before_external_fd ()
 
virtual void reset_after_external_fd ()
 
virtual void update_in_external_fd (const unsigned &i)
 
virtual void reset_in_external_fd (const unsigned &i)
 
virtual void fill_in_contribution_to_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &mass_matrix)
 
virtual void fill_in_contribution_to_jacobian_and_mass_matrix (Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)
 
virtual void fill_in_contribution_to_dresiduals_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam)
 
virtual void fill_in_contribution_to_djacobian_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)
 
virtual void fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter (double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)
 
virtual void fill_in_contribution_to_hessian_vector_products (Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)
 
virtual void fill_in_contribution_to_inner_products (Vector< std::pair< unsigned, unsigned >> const &history_index, Vector< double > &inner_product)
 
virtual void fill_in_contribution_to_inner_product_vectors (Vector< unsigned > const &history_index, Vector< Vector< double >> &inner_product_vector)
 

Private Member Functions

const unsigned Initial_Nvalue [6]
 The number of values stored at each node. More...
 
const unsigned Face_index_of_edge_flux [3]
 Face index associated with edge flux degree of freedom. More...
 
const unsigned Q_edge_conv [3]
 
const double Flux_interpolation_point [1]
 The points along each edge where the fluxes are taken to be. More...
 
const unsigned Initial_Nvalue [6]
 The number of values stored at each node. More...
 
const unsigned Face_index_of_edge_flux [3]
 Face index associated with edge flux degree of freedom. More...
 
const unsigned Q_edge_conv [3]
 
const double Flux_interpolation_point [2]
 The points along each edge where the fluxes are taken to be. More...
 

Private Attributes

unsigned Q_internal_data_index
 
unsigned P_internal_data_index
 The internal data index where the p degrees of freedom are stored. More...
 
std::vector< short > Sign_edge
 

Static Private Attributes

static const unsigned Initial_Nvalue []
 The number of values stored at each node. More...
 
static const unsigned Face_index_of_edge_flux []
 Face index associated with edge flux degree of freedom. More...
 
static const unsigned Q_edge_conv []
 
static const double Flux_interpolation_point []
 The points along each edge where the fluxes are taken to be. More...
 

Additional Inherited Members

- Public Types inherited from oomph::AxisymmetricPoroelasticityEquations
typedef void(* SourceFctPt) (const double &time, const Vector< double > &x, Vector< double > &f)
 Source function pointer typedef. More...
 
typedef void(* MassSourceFctPt) (const double &time, const Vector< double > &x, double &f)
 Mass source function pointer typedef. More...
 
- Public Types inherited from oomph::FiniteElement
typedef void(* SteadyExactSolutionFctPt) (const Vector< double > &, Vector< double > &)
 
typedef void(* UnsteadyExactSolutionFctPt) (const double &, const Vector< double > &, Vector< double > &)
 
- Static Public Attributes inherited from oomph::FiniteElement
static double Tolerance_for_singular_jacobian = 1.0e-16
 Tolerance below which the jacobian is considered singular. More...
 
static bool Accept_negative_jacobian = false
 
static bool Suppress_output_while_checking_for_inverted_elements
 
- Static Public Attributes inherited from oomph::GeneralisedElement
static bool Suppress_warning_about_repeated_internal_data
 
static bool Suppress_warning_about_repeated_external_data = true
 
static double Default_fd_jacobian_step = 1.0e-8
 
- Protected Attributes inherited from oomph::FiniteElement
MacroElement * Macro_elem_pt
 Pointer to the element's macro element (NULL by default) More...
 
- Protected Attributes inherited from oomph::GeomObject
unsigned NLagrangian
 Number of Lagrangian (intrinsic) coordinates. More...
 
unsigned Ndim
 Number of Eulerian coordinates. More...
 
TimeStepper * Geom_object_time_stepper_pt
 
- Static Protected Attributes inherited from oomph::FiniteElement
static const unsigned Default_Initial_Nvalue = 0
 Default value for the number of values at a node. More...
 
static const double Node_location_tolerance = 1.0e-14
 
static const unsigned N2deriv [] = {0, 1, 3, 6}
 
- Static Protected Attributes inherited from oomph::GeneralisedElement
static DenseMatrix< double > Dummy_matrix
 
static std::deque< double * > Dof_pt_deque
 

Detailed Description

template<unsigned ORDER>
class oomph::TAxisymmetricPoroelasticityElement< ORDER >

================================================================= Element which solves the Darcy/linear elasticity equations using TElements Geometrically the element is always a six noded triangle. We use the mid-side nodes to store edge-based flux degrees of freedom and internal data for the discontinuous pressure

and internal flux dofs.

Constructor & Destructor Documentation

◆ TAxisymmetricPoroelasticityElement() [1/3]

template<unsigned ORDER>
oomph::TAxisymmetricPoroelasticityElement< ORDER >::TAxisymmetricPoroelasticityElement ( )

Constructor.

◆ ~TAxisymmetricPoroelasticityElement() [1/3]

template<unsigned ORDER>
oomph::TAxisymmetricPoroelasticityElement< ORDER >::~TAxisymmetricPoroelasticityElement ( )

Destructor.

◆ TAxisymmetricPoroelasticityElement() [2/3]

oomph::TAxisymmetricPoroelasticityElement< 0 >::TAxisymmetricPoroelasticityElement ( )

/////////////////////////////////////////////////////////////////////////// /////////////////////////////////////////////////////////////////////////// Lowest-order Raviart-Thomas based Darcy/axisym lin elast equation element /////////////////////////////////////////////////////////////////////////// /////////////////////////////////////////////////////////////////////////// Constructor. Order 0 elements have 1 pressure dof and no internal flux dofs

42  : TElement<2, 3>(), AxisymmetricPoroelasticityEquations(), Sign_edge(3, 1)
43  {
44  P_internal_data_index = this->add_internal_data(new Data(1));
45  }
oomph::AxisymmetricPoroelasticityEquations::AxisymmetricPoroelasticityEquations
AxisymmetricPoroelasticityEquations()
Constructor.
Definition: axisym_poroelasticity_elements.h:64
oomph::GeneralisedElement::add_internal_data
unsigned add_internal_data(Data *const &data_pt, const bool &fd=true)
Definition: elements.cc:62
oomph::TAxisymmetricPoroelasticityElement::Sign_edge
std::vector< short > Sign_edge
Definition: Taxisym_poroelasticity_elements.h:75
oomph::TAxisymmetricPoroelasticityElement::P_internal_data_index
unsigned P_internal_data_index
The internal data index where the p degrees of freedom are stored.
Definition: Taxisym_poroelasticity_elements.h:71

References oomph::GeneralisedElement::add_internal_data(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::P_internal_data_index.

◆ ~TAxisymmetricPoroelasticityElement() [2/3]

oomph::TAxisymmetricPoroelasticityElement< 0 >::~TAxisymmetricPoroelasticityElement ( )

Destructor.

52  {
53  }

◆ TAxisymmetricPoroelasticityElement() [3/3]

oomph::TAxisymmetricPoroelasticityElement< 1 >::TAxisymmetricPoroelasticityElement ( )

//////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////// Second-orderRaviart-Thomas based Darcy/axisym lin elast equation element //////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////// Constructor. Order 1 elements have 3 pressure dofs and 2 internal velocity dofs

182  : TElement<2, 3>(), AxisymmetricPoroelasticityEquations(), Sign_edge(3, 1)
183  {
184  // RT_1 elements have 2 internal degrees of freedom for u, and 3 for p
185  Q_internal_data_index = this->add_internal_data(new Data(2));
186  P_internal_data_index = this->add_internal_data(new Data(3));
187  }
oomph::TAxisymmetricPoroelasticityElement::Q_internal_data_index
unsigned Q_internal_data_index
Definition: Taxisym_poroelasticity_elements.h:68

References oomph::GeneralisedElement::add_internal_data(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::P_internal_data_index, and oomph::TAxisymmetricPoroelasticityElement< ORDER >::Q_internal_data_index.

◆ ~TAxisymmetricPoroelasticityElement() [3/3]

oomph::TAxisymmetricPoroelasticityElement< 1 >::~TAxisymmetricPoroelasticityElement ( )

Destructor.

194  {
195  }

Member Function Documentation

◆ edge_flux_interpolation_point()

template<unsigned ORDER>
Vector<double> oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point ( const unsigned &  edge,
const unsigned &  j 
) const
inlinevirtual

Returns the local coordinate of the jth flux_interpolation point along specified edge

Implements oomph::AxisymmetricPoroelasticityEquations.

378  {
379 #ifdef RANGE_CHECKING
380  if (edge >= 3)
381  {
382  std::ostringstream error_message;
383  error_message << "Range Error: edge " << edge
384  << " is not in the range (0,2)";
385  throw OomphLibError(error_message.str(),
386  OOMPH_CURRENT_FUNCTION,
387  OOMPH_EXCEPTION_LOCATION);
388  }
389  if (j >= nedge_flux_interpolation_point())
390  {
391  std::ostringstream error_message;
392  error_message << "Range Error: j " << j << " is not in the range (0,"
393  << nedge_flux_interpolation_point() - 1 << ")";
394  throw OomphLibError(error_message.str(),
395  OOMPH_CURRENT_FUNCTION,
396  OOMPH_EXCEPTION_LOCATION);
397  }
398 #endif
399  Vector<double> coord(1);
400  coord[0] = (1.0 - sign_edge(edge)) / 2.0 +
401  sign_edge(edge) * Flux_interpolation_point[j];
402  return coord;
403  }
oomph::TAxisymmetricPoroelasticityElement::Flux_interpolation_point
static const double Flux_interpolation_point[]
The points along each edge where the fluxes are taken to be.
Definition: Taxisym_poroelasticity_elements.h:64
oomph::TAxisymmetricPoroelasticityElement::sign_edge
const short & sign_edge(const unsigned &n) const
Accessor for the unit normal sign of edge n (const version)
Definition: Taxisym_poroelasticity_elements.h:596
OOMPH_EXCEPTION_LOCATION
#define OOMPH_EXCEPTION_LOCATION
Definition: oomph_definitions.h:61
OOMPH_CURRENT_FUNCTION
#define OOMPH_CURRENT_FUNCTION
Definition: oomph_definitions.h:86
j
std::ptrdiff_t j
Definition: tut_arithmetic_redux_minmax.cpp:2

References oomph::TAxisymmetricPoroelasticityElement< ORDER >::Flux_interpolation_point, j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::nedge_flux_interpolation_point(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, and oomph::TAxisymmetricPoroelasticityElement< ORDER >::sign_edge().

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point_global(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::face_local_coordinate_of_flux_interpolation_point().

◆ edge_flux_interpolation_point_global()

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point_global ( const unsigned &  edge,
const unsigned &  j,
Vector< double > &  x 
) const
inlinevirtual

Compute the global coordinates of the jth flux_interpolation point along specified edge

Implements oomph::AxisymmetricPoroelasticityEquations.

410  {
411 #ifdef RANGE_CHECKING
412  if (edge >= 3)
413  {
414  std::ostringstream error_message;
415  error_message << "Range Error: edge " << edge
416  << " is not in the range (0,2)";
417  throw OomphLibError(error_message.str(),
418  OOMPH_CURRENT_FUNCTION,
419  OOMPH_EXCEPTION_LOCATION);
420  }
421  if (j >= nedge_flux_interpolation_point())
422  {
423  std::ostringstream error_message;
424  error_message << "Range Error: j " << j << " is not in the range (0,"
425  << nedge_flux_interpolation_point() - 1 << ")";
426  throw OomphLibError(error_message.str(),
427  OOMPH_CURRENT_FUNCTION,
428  OOMPH_EXCEPTION_LOCATION);
429  }
430 #endif
431 
432  // Get the location of the n-th flux_interpolation point along the
433  // edge in terms of the distance along the edge itself
434  Vector<double> flux_interpolation_point =
435  edge_flux_interpolation_point(edge, j);
436 
437  // Convert the edge number to the number of the mid-edge node along that
438  // edge
439  unsigned node_number = Q_edge_conv[edge];
440 
441  // Storage for the local coords of the flux_interpolation point
442  Vector<double> s_flux_interpolation(2, 0);
443 
444  // The edge basis functions are defined in a clockwise manner, so we have
445  // to effectively "flip" the coordinates along edges 0 and 1 to match this
446  switch (node_number)
447  {
448  case 3:
449  s_flux_interpolation[0] = 1.0 - flux_interpolation_point[0];
450  s_flux_interpolation[1] = flux_interpolation_point[0];
451  break;
452  case 4:
453  s_flux_interpolation[0] = 0.0;
454  s_flux_interpolation[1] = 1.0 - flux_interpolation_point[0];
455  break;
456  case 5:
457  s_flux_interpolation[0] = flux_interpolation_point[0];
458  s_flux_interpolation[1] = 0.0;
459  break;
460  }
461 
462  // Calculate the global coordinates from the local ones
463  interpolated_x(s_flux_interpolation, x);
464  }
oomph::FiniteElement::interpolated_x
virtual double interpolated_x(const Vector< double > &s, const unsigned &i) const
Return FE interpolated coordinate x[i] at local coordinate s.
Definition: elements.cc:3962
oomph::TAxisymmetricPoroelasticityElement::edge_flux_interpolation_point
Vector< double > edge_flux_interpolation_point(const unsigned &edge, const unsigned &j) const
Definition: Taxisym_poroelasticity_elements.h:376
oomph::TAxisymmetricPoroelasticityElement::Q_edge_conv
static const unsigned Q_edge_conv[]
Definition: Taxisym_poroelasticity_elements.h:61
plotDoE.x
list x
Definition: plotDoE.py:28

References oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point(), oomph::FiniteElement::interpolated_x(), j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::nedge_flux_interpolation_point(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::TAxisymmetricPoroelasticityElement< ORDER >::Q_edge_conv, and plotDoE::x.

◆ edge_flux_node_pt()

template<unsigned ORDER>
Node* oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_node_pt ( const unsigned &  edge)
inline

Get pointer to node that stores the edge flux dofs for specified edge.

246  {
247  return node_pt(Q_edge_conv[edge]);
248  }
oomph::FiniteElement::node_pt
Node *& node_pt(const unsigned &n)
Return a pointer to the local node n.
Definition: elements.h:2175

References oomph::FiniteElement::node_pt(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::Q_edge_conv.

◆ face_index_of_edge()

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::face_index_of_edge ( const unsigned &  j) const
inlinevirtual

Return the face index associated with specified edge.

Implements oomph::AxisymmetricPoroelasticityEquations.

92  {
93  return (j + 2) % 3;
94  }

References j.

◆ Face_index_of_edge_flux() [1/2]

const unsigned oomph::TAxisymmetricPoroelasticityElement< 0 >::Face_index_of_edge_flux
private

Face index associated with edge flux degree of freedom.

◆ Face_index_of_edge_flux() [2/2]

const unsigned oomph::TAxisymmetricPoroelasticityElement< 1 >::Face_index_of_edge_flux
private

Face index associated with edge flux degree of freedom.

◆ face_index_of_q_edge_basis_fct()

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::face_index_of_q_edge_basis_fct ( const unsigned &  j) const
inlinevirtual

Return the face index associated with j-th edge flux degree of freedom.

Implements oomph::AxisymmetricPoroelasticityEquations.

128  {
129  return Face_index_of_edge_flux[j];
130  }
oomph::TAxisymmetricPoroelasticityElement::Face_index_of_edge_flux
static const unsigned Face_index_of_edge_flux[]
Face index associated with edge flux degree of freedom.
Definition: Taxisym_poroelasticity_elements.h:57

References oomph::TAxisymmetricPoroelasticityElement< ORDER >::Face_index_of_edge_flux, and j.

◆ face_local_coordinate_of_flux_interpolation_point()

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::face_local_coordinate_of_flux_interpolation_point ( const unsigned &  edge,
const unsigned &  n,
Vector< double > &  s 
) const
inlinevirtual

Compute the face element coordinates of the nth flux interpolation point along specified edge

Implements oomph::AxisymmetricPoroelasticityEquations.

100  {
101  // Get the location of the n-th flux interpolation point along
102  // the edge in terms of the distance along the edge itself
103  Vector<double> flux_interpolation_point =
104  edge_flux_interpolation_point(edge, n);
105 
106  // Convert the edge number to the number of the mid-edge node along that
107  // edge
108  unsigned node_number = Q_edge_conv[edge];
109 
110  // The edge basis functions are defined in a clockwise manner, so we have
111  // to effectively "flip" some coordinates
112  switch (node_number)
113  {
114  case 3:
115  s[0] = flux_interpolation_point[0];
116  break;
117  case 4:
118  s[0] = 1.0 - flux_interpolation_point[0];
119  break;
120  case 5:
121  s[0] = flux_interpolation_point[0];
122  break;
123  }
124  }
n
const unsigned n
Definition: CG3DPackingUnitTest.cpp:11
s
RealScalar s
Definition: level1_cplx_impl.h:130

References oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point(), n, oomph::TAxisymmetricPoroelasticityElement< ORDER >::Q_edge_conv, and s.

◆ Flux_interpolation_point() [1/2]

const double oomph::TAxisymmetricPoroelasticityElement< 0 >::Flux_interpolation_point
private

The points along each edge where the fluxes are taken to be.

◆ Flux_interpolation_point() [2/2]

const double oomph::TAxisymmetricPoroelasticityElement< 1 >::Flux_interpolation_point
private

The points along each edge where the fluxes are taken to be.

References sqrt().

◆ get_div_q_basis_local() [1/3]

void oomph::TAxisymmetricPoroelasticityElement< 0 >::get_div_q_basis_local ( const Vector< double > &  s,
Shape &  div_q_basis_ds 
) const
virtual

Compute the local form of the q basis and dbasis/ds at local coordinate s.

Implements oomph::AxisymmetricPoroelasticityEquations.

97  {
98  div_q_basis_ds(0) = Sign_edge[0] * 2 * std::sqrt(2);
99  div_q_basis_ds(1) = Sign_edge[1] * 2;
100  div_q_basis_ds(2) = Sign_edge[2] * 2;
101 
102  // Scale the basis by the ratio of the length of the edge to the length of
103  // the corresponding edge on the reference element
104  scale_basis(div_q_basis_ds);
105  }
sqrt
AnnoyingScalar sqrt(const AnnoyingScalar &x)
Definition: AnnoyingScalar.h:134
oomph::TAxisymmetricPoroelasticityElement::scale_basis
void scale_basis(Shape &basis) const
Scale the edge basis to allow arbitrary edge mappings.
Definition: Taxisym_poroelasticity_elements.h:555

References sqrt().

◆ get_div_q_basis_local() [2/3]

void oomph::TAxisymmetricPoroelasticityElement< 1 >::get_div_q_basis_local ( const Vector< double > &  s,
Shape &  div_q_basis_ds 
) const
virtual

Returns the local form of the q basis and dbasis/ds at local coordinate s.

Implements oomph::AxisymmetricPoroelasticityEquations.

273  {
274  Vector<double> g1_vect, g2_vect;
275  g1_vect = edge_flux_interpolation_point(0, 0);
276  g2_vect = edge_flux_interpolation_point(0, 1);
277  double g1 = g1_vect[0];
278  double g2 = g2_vect[0];
279  div_q_basis_ds(0) =
280  Sign_edge[0] * std::sqrt(2.0) * (3.0 * s[1] - 2.0 * g2) / (g1 - g2);
281  div_q_basis_ds(1) =
282  Sign_edge[0] * std::sqrt(2.0) * (2.0 * g1 - 3.0 * s[1]) / (g1 - g2);
283 
284  g1_vect = edge_flux_interpolation_point(1, 0);
285  g2_vect = edge_flux_interpolation_point(1, 1);
286  g1 = g1_vect[0];
287  g2 = g2_vect[0];
288  div_q_basis_ds(2) = Sign_edge[1] * (2.0 * g1 - 3.0 * s[1]) / (g1 - g2);
289  div_q_basis_ds(3) = Sign_edge[1] * (3.0 * s[1] - 2.0 * g2) / (g1 - g2);
290 
291  g1_vect = edge_flux_interpolation_point(2, 0);
292  g2_vect = edge_flux_interpolation_point(2, 1);
293  g1 = g1_vect[0];
294  g2 = g2_vect[0];
295  div_q_basis_ds(4) = Sign_edge[2] * (3.0 * s[0] - 2.0 * g2) / (g1 - g2);
296  div_q_basis_ds(5) = Sign_edge[2] * (2.0 * g1 - 3.0 * s[0]) / (g1 - g2);
297 
298  div_q_basis_ds(6) = 3.0 * s[1] - 1.0;
299  div_q_basis_ds(7) = 3.0 * s[0] - 1.0;
300 
301  // Scale the basis by the ratio of the length of the edge to the length of
302  // the corresponding edge on the reference element
303  scale_basis(div_q_basis_ds);
304  }

References s, and sqrt().

◆ get_div_q_basis_local() [3/3]

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::get_div_q_basis_local ( const Vector< double > &  s,
Shape &  div_q_basis_ds 
) const
virtual

Returns the local form of the q basis and dbasis/ds at local coordinate s

Implements oomph::AxisymmetricPoroelasticityEquations.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local().

◆ get_p_basis() [1/3]

void oomph::TAxisymmetricPoroelasticityElement< 0 >::get_p_basis ( const Vector< double > &  s,
Shape &  p_basis 
) const
virtual

Return the pressure basis.

Implements oomph::AxisymmetricPoroelasticityEquations.

133  {
134  p_basis(0) = 1.0;
135  }

◆ get_p_basis() [2/3]

void oomph::TAxisymmetricPoroelasticityElement< 1 >::get_p_basis ( const Vector< double > &  s,
Shape &  p_basis 
) const
virtual

Return the pressure basis.

Implements oomph::AxisymmetricPoroelasticityEquations.

332  {
333  p_basis(0) = 1.0;
334  p_basis(1) = s[0];
335  p_basis(2) = s[1];
336  }

References s.

◆ get_p_basis() [3/3]

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::get_p_basis ( const Vector< double > &  s,
Shape &  p_basis 
) const
virtual

Return the pressure basis.

Implements oomph::AxisymmetricPoroelasticityEquations.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local().

◆ get_q_basis_local() [1/3]

void oomph::TAxisymmetricPoroelasticityElement< 0 >::get_q_basis_local ( const Vector< double > &  s,
Shape &  q_basis 
) const
virtual

Compute the local form of the q basis at local coordinate s.

Implements oomph::AxisymmetricPoroelasticityEquations.

79  {
80  // RT_0 basis functions
81  q_basis(0, 0) = Sign_edge[0] * std::sqrt(2) * s[0];
82  q_basis(0, 1) = Sign_edge[0] * std::sqrt(2) * s[1];
83 
84  q_basis(1, 0) = Sign_edge[1] * (s[0] - 1);
85  q_basis(1, 1) = Sign_edge[1] * s[1];
86 
87  q_basis(2, 0) = Sign_edge[2] * s[0];
88  q_basis(2, 1) = Sign_edge[2] * (s[1] - 1);
89  }

References s, and sqrt().

◆ get_q_basis_local() [2/3]

void oomph::TAxisymmetricPoroelasticityElement< 1 >::get_q_basis_local ( const Vector< double > &  s,
Shape &  q_basis 
) const
virtual

Returns the local form of the q basis at local coordinate s.

Implements oomph::AxisymmetricPoroelasticityEquations.

221  {
222  // RT_1 basis functions
223  Vector<double> g1_vect, g2_vect;
224  g1_vect = edge_flux_interpolation_point(0, 0);
225  g2_vect = edge_flux_interpolation_point(0, 1);
226  double g1 = g1_vect[0];
227  double g2 = g2_vect[0];
228 
229  q_basis(0, 0) =
230  Sign_edge[0] * std::sqrt(2.0) * s[0] * (s[1] - g2) / (g1 - g2);
231  q_basis(0, 1) =
232  Sign_edge[0] * std::sqrt(2.0) * s[1] * (s[1] - g2) / (g1 - g2);
233 
234  q_basis(1, 0) =
235  Sign_edge[0] * std::sqrt(2.0) * s[0] * (s[1] - g1) / (g2 - g1);
236  q_basis(1, 1) =
237  Sign_edge[0] * std::sqrt(2.0) * s[1] * (s[1] - g1) / (g2 - g1);
238 
239  g1_vect = edge_flux_interpolation_point(1, 0);
240  g2_vect = edge_flux_interpolation_point(1, 1);
241  g1 = g1_vect[0];
242  g2 = g2_vect[0];
243  q_basis(2, 0) = Sign_edge[1] * (s[0] - 1.0) * (s[1] - g1) / (g2 - g1);
244  q_basis(2, 1) = Sign_edge[1] * s[1] * (s[1] - g1) / (g2 - g1);
245 
246  q_basis(3, 0) = Sign_edge[1] * (s[0] - 1.0) * (s[1] - g2) / (g1 - g2);
247  q_basis(3, 1) = Sign_edge[1] * s[1] * (s[1] - g2) / (g1 - g2);
248 
249  g1_vect = edge_flux_interpolation_point(2, 0);
250  g2_vect = edge_flux_interpolation_point(2, 1);
251 
252  g1 = g1_vect[0];
253  g2 = g2_vect[0];
254  q_basis(4, 0) = Sign_edge[2] * s[0] * (s[0] - g2) / (g1 - g2);
255  q_basis(4, 1) = Sign_edge[2] * (s[1] - 1.0) * (s[0] - g2) / (g1 - g2);
256 
257  q_basis(5, 0) = Sign_edge[2] * s[0] * (s[0] - g1) / (g2 - g1);
258  q_basis(5, 1) = Sign_edge[2] * (s[1] - 1.0) * (s[0] - g1) / (g2 - g1);
259 
260  q_basis(6, 0) = s[1] * s[0];
261  q_basis(6, 1) = s[1] * (s[1] - 1.0);
262 
263  q_basis(7, 0) = s[0] * (s[0] - 1.0);
264  q_basis(7, 1) = s[0] * s[1];
265  }

References s, and sqrt().

◆ get_q_basis_local() [3/3]

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::get_q_basis_local ( const Vector< double > &  s,
Shape &  q_basis 
) const
virtual

Returns the local form of the q basis at local coordinate s.

Implements oomph::AxisymmetricPoroelasticityEquations.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local().

◆ Initial_Nvalue() [1/2]

const unsigned oomph::TAxisymmetricPoroelasticityElement< 0 >::Initial_Nvalue
private

The number of values stored at each node.

◆ Initial_Nvalue() [2/2]

const unsigned oomph::TAxisymmetricPoroelasticityElement< 1 >::Initial_Nvalue
private

The number of values stored at each node.

◆ nedge_flux_interpolation_point() [1/3]

unsigned oomph::TAxisymmetricPoroelasticityElement< 0 >::nedge_flux_interpolation_point ( ) const
virtual

Return the number of flux_interpolation points along each edge of the element

Implements oomph::AxisymmetricPoroelasticityEquations.

114  {
115  return 1;
116  }

◆ nedge_flux_interpolation_point() [2/3]

unsigned oomph::TAxisymmetricPoroelasticityElement< 1 >::nedge_flux_interpolation_point ( ) const
virtual

Returns the number of flux_interpolation points along each edge of the element

Implements oomph::AxisymmetricPoroelasticityEquations.

313  {
314  return 2;
315  }

◆ nedge_flux_interpolation_point() [3/3]

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::nedge_flux_interpolation_point ( ) const
virtual

Returns the number of flux_interpolation points along each edge of the element

Implements oomph::AxisymmetricPoroelasticityEquations.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point_global().

◆ np_basis() [1/3]

unsigned oomph::TAxisymmetricPoroelasticityElement< 0 >::np_basis ( ) const
virtual

Return the total number of pressure basis functions.

Implements oomph::AxisymmetricPoroelasticityEquations.

123  {
124  return 1;
125  }

◆ np_basis() [2/3]

unsigned oomph::TAxisymmetricPoroelasticityElement< 1 >::np_basis ( ) const
virtual

Return the total number of pressure basis functions.

Implements oomph::AxisymmetricPoroelasticityEquations.

322  {
323  return 3;
324  }

◆ np_basis() [3/3]

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::np_basis ( ) const
virtual

Return the total number of pressure basis functions.

Implements oomph::AxisymmetricPoroelasticityEquations.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::p_local_eqn(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::p_value(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::pin_p_value().

◆ nq_basis_edge() [1/3]

unsigned oomph::TAxisymmetricPoroelasticityElement< 0 >::nq_basis_edge ( ) const
virtual

Return the number of edge basis functions for flux q.

Implements oomph::AxisymmetricPoroelasticityEquations.

60  {
61  return 3;
62  }

◆ nq_basis_edge() [2/3]

unsigned oomph::TAxisymmetricPoroelasticityElement< 1 >::nq_basis_edge ( ) const
virtual

Return the number of edge basis functions for flux q.

Implements oomph::AxisymmetricPoroelasticityEquations.

202  {
203  return 6;
204  }

◆ nq_basis_edge() [3/3]

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_edge ( ) const
virtual

Return the number of edge basis functions for flux q.

Implements oomph::AxisymmetricPoroelasticityEquations.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_index(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_local_eqn(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_node_number(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::scale_basis().

◆ nq_basis_internal() [1/3]

unsigned oomph::TAxisymmetricPoroelasticityElement< 0 >::nq_basis_internal ( ) const
virtual

Return the number of internal basis functions for flux q.

Implements oomph::AxisymmetricPoroelasticityEquations.

69  {
70  return 0;
71  }

◆ nq_basis_internal() [2/3]

unsigned oomph::TAxisymmetricPoroelasticityElement< 1 >::nq_basis_internal ( ) const
virtual

Return the number of internal basis functions for flux q.

Implements oomph::AxisymmetricPoroelasticityEquations.

211  {
212  return 2;
213  }

◆ nq_basis_internal() [3/3]

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_internal ( ) const
virtual

Return the number of internal basis functions for flux q.

Implements oomph::AxisymmetricPoroelasticityEquations.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::pin_q_internal_value(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_local_eqn().

◆ nrecovery_order()

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::nrecovery_order ( )
inlinevirtual

Recovery order for Z2 error estimator.

Implements oomph::ElementWithZ2ErrorEstimator.

635  {
636  return 2; // need to experiment with this...
637  }

◆ nvertex_node()

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::nvertex_node ( ) const
inlinevirtual

Number of vertex nodes in the element.

Reimplemented from oomph::FiniteElement.

623  {
624  return TElement<2, 3>::nvertex_node();
625  }

◆ output() [1/2]

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::output ( std::ostream &  outfile)
inlinevirtual

Output with default number of plot points.

Reimplemented from oomph::AxisymmetricPoroelasticityEquations.

609  {
610  AxisymmetricPoroelasticityEquations::output(outfile);
611  }
oomph::AxisymmetricPoroelasticityEquations::output
void output(std::ostream &outfile)
Output with default number of plot points.
Definition: axisym_poroelasticity_elements.h:1221

References oomph::AxisymmetricPoroelasticityEquations::output().

◆ output() [2/2]

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::output ( std::ostream &  outfile,
const unsigned &  Nplot 
)
inlinevirtual

Output FE representation of soln: x,y,u1,u2,div_q,p at Nplot^DIM plot points

Reimplemented from oomph::AxisymmetricPoroelasticityEquations.

616  {
617  AxisymmetricPoroelasticityEquations::output(outfile, Nplot);
618  }

References oomph::AxisymmetricPoroelasticityEquations::output().

◆ p_data_pt()

template<unsigned ORDER>
Data* oomph::TAxisymmetricPoroelasticityElement< ORDER >::p_data_pt ( ) const
inlinevirtual

Return pointer to the Data object that stores the pressure values.

Implements oomph::AxisymmetricPoroelasticityEquations.

544  {
545  return this->internal_data_pt(P_internal_data_index);
546  }
oomph::GeneralisedElement::internal_data_pt
Data *& internal_data_pt(const unsigned &i)
Return a pointer to i-th internal data object.
Definition: elements.h:622

References oomph::GeneralisedElement::internal_data_pt().

◆ p_local_eqn()

template<unsigned ORDER>
int oomph::TAxisymmetricPoroelasticityElement< ORDER >::p_local_eqn ( const unsigned &  j) const
inlinevirtual

Return the equation number of the j-th pressure degree of freedom.

Implements oomph::AxisymmetricPoroelasticityEquations.

486  {
487 #ifdef RANGE_CHECKING
488  if (j >= np_basis())
489  {
490  std::ostringstream error_message;
491  error_message << "Range Error: j " << j << " is not in the range (0,"
492  << np_basis() - 1 << ")";
493  throw OomphLibError(error_message.str(),
494  OOMPH_CURRENT_FUNCTION,
495  OOMPH_EXCEPTION_LOCATION);
496  }
497 #endif
498  return this->internal_local_eqn(P_internal_data_index, j);
499  }
oomph::GeneralisedElement::internal_local_eqn
int internal_local_eqn(const unsigned &i, const unsigned &j) const
Definition: elements.h:267
oomph::TAxisymmetricPoroelasticityElement::np_basis
unsigned np_basis() const
Return the total number of pressure basis functions.

References oomph::GeneralisedElement::internal_local_eqn(), j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::np_basis(), OOMPH_CURRENT_FUNCTION, and OOMPH_EXCEPTION_LOCATION.

◆ p_value()

template<unsigned ORDER>
double oomph::TAxisymmetricPoroelasticityElement< ORDER >::p_value ( const unsigned &  j) const
inlinevirtual

Return the jth pressure value.

Implements oomph::AxisymmetricPoroelasticityEquations.

503  {
504 #ifdef RANGE_CHECKING
505  if (j >= np_basis())
506  {
507  std::ostringstream error_message;
508  error_message << "Range Error: j " << j << " is not in the range (0,"
509  << np_basis() - 1 << ")";
510  throw OomphLibError(error_message.str(),
511  OOMPH_CURRENT_FUNCTION,
512  OOMPH_EXCEPTION_LOCATION);
513  }
514 #endif
515  return this->internal_data_pt(P_internal_data_index)->value(j);
516  }
oomph::Data::value
double value(const unsigned &i) const
Definition: nodes.h:293

References oomph::GeneralisedElement::internal_data_pt(), j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::np_basis(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, and oomph::Data::value().

◆ pin_p_value()

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::pin_p_value ( const unsigned &  j,
const double &  p 
)
inlinevirtual

Pin the jth pressure value and set to specified value.

Implements oomph::AxisymmetricPoroelasticityEquations.

526  {
527 #ifdef RANGE_CHECKING
528  if (j >= np_basis())
529  {
530  std::ostringstream error_message;
531  error_message << "Range Error: j " << j << " is not in the range (0,"
532  << np_basis() - 1 << ")";
533  throw OomphLibError(error_message.str(),
534  OOMPH_CURRENT_FUNCTION,
535  OOMPH_EXCEPTION_LOCATION);
536  }
537 #endif
538  this->internal_data_pt(P_internal_data_index)->pin(j);
539  this->internal_data_pt(P_internal_data_index)->set_value(j, p);
540  }
p
float * p
Definition: Tutorial_Map_using.cpp:9
oomph::Data::pin
void pin(const unsigned &i)
Pin the i-th stored variable.
Definition: nodes.h:385
oomph::Data::set_value
void set_value(const unsigned &i, const double &value_)
Definition: nodes.h:271

References oomph::GeneralisedElement::internal_data_pt(), j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::np_basis(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, p, oomph::Data::pin(), and oomph::Data::set_value().

◆ pin_q_edge_value()

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::pin_q_edge_value ( const unsigned &  j,
const double &  value 
)
inlinevirtual

Pin the j-th edge (flux) degree of freedom and set it to specified value.

Implements oomph::AxisymmetricPoroelasticityEquations.

322  {
323  node_pt(q_edge_node_number(j))->pin(q_edge_index(j));
324  node_pt(q_edge_node_number(j))->set_value(q_edge_index(j), value);
325  }
oomph::TAxisymmetricPoroelasticityElement::q_edge_index
unsigned q_edge_index(const unsigned &j) const
Return the nodal index at which the jth edge unknown is stored.
Definition: Taxisym_poroelasticity_elements.h:210
oomph::TAxisymmetricPoroelasticityElement::q_edge_node_number
unsigned q_edge_node_number(const unsigned &j) const
Return the number of the node where the jth edge unknown is stored.
Definition: Taxisym_poroelasticity_elements.h:227
Eigen::value
squared absolute value
Definition: GlobalFunctions.h:87

References j, oomph::FiniteElement::node_pt(), oomph::Data::pin(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_index(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_node_number(), oomph::Data::set_value(), and Eigen::value.

◆ pin_q_internal_value()

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::pin_q_internal_value ( const unsigned &  j,
const double &  q 
)
inlinevirtual

Pin the jth internal q value and set it to specified value.

Implements oomph::AxisymmetricPoroelasticityEquations.

468  {
469 #ifdef RANGE_CHECKING
470  if (j >= nq_basis_internal())
471  {
472  std::ostringstream error_message;
473  error_message << "Range Error: j " << j << " is not in the range (0,"
474  << nq_basis_internal() - 1 << ")";
475  throw OomphLibError(error_message.str(),
476  OOMPH_CURRENT_FUNCTION,
477  OOMPH_EXCEPTION_LOCATION);
478  }
479 #endif
480  this->internal_data_pt(q_internal_index())->pin(j);
481  this->internal_data_pt(q_internal_index())->set_value(j, q);
482  }
oomph::TAxisymmetricPoroelasticityElement::q_internal_index
unsigned q_internal_index() const
Definition: Taxisym_poroelasticity_elements.h:204
oomph::TAxisymmetricPoroelasticityElement::nq_basis_internal
unsigned nq_basis_internal() const
Return the number of internal basis functions for flux q.
Eigen::numext::q
EIGEN_DEVICE_FUNC const Scalar & q
Definition: SpecialFunctionsImpl.h:2019

References oomph::GeneralisedElement::internal_data_pt(), j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_internal(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::Data::pin(), Eigen::numext::q, oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_index(), and oomph::Data::set_value().

◆ q_edge() [1/2]

template<unsigned ORDER>
double oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge ( const unsigned &  j) const
inlinevirtual

Return the values of the j-th edge (flux) degree of freedom.

Implements oomph::AxisymmetricPoroelasticityEquations.

252  {
253 #ifdef RANGE_CHECKING
254  if (j >= (nq_basis_edge()))
255  {
256  std::ostringstream error_message;
257  error_message << "Range Error: j " << j << " is not in the range (0,"
258  << nq_basis_edge() - 1 << ")";
259  throw OomphLibError(error_message.str(),
260  OOMPH_CURRENT_FUNCTION,
261  OOMPH_EXCEPTION_LOCATION);
262  }
263 #endif
264  return nodal_value(q_edge_node_number(j), q_edge_index(j));
265  }
oomph::FiniteElement::nodal_value
double nodal_value(const unsigned &n, const unsigned &i) const
Definition: elements.h:2593
oomph::TAxisymmetricPoroelasticityElement::nq_basis_edge
unsigned nq_basis_edge() const
Return the number of edge basis functions for flux q.

References j, oomph::FiniteElement::nodal_value(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_edge(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_index(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_node_number().

◆ q_edge() [2/2]

template<unsigned ORDER>
double oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge ( const unsigned &  t,
const unsigned &  j 
) const
inlinevirtual

Return the values of the j-th edge (flux) degree of freedom at time history level t

Implements oomph::AxisymmetricPoroelasticityEquations.

270  {
271 #ifdef RANGE_CHECKING
272  if (j >= (nq_basis_edge()))
273  {
274  std::ostringstream error_message;
275  error_message << "Range Error: j " << j << " is not in the range (0,"
276  << nq_basis_edge() - 1 << ")";
277  throw OomphLibError(error_message.str(),
278  OOMPH_CURRENT_FUNCTION,
279  OOMPH_EXCEPTION_LOCATION);
280  }
281 #endif
282  return nodal_value(t, q_edge_node_number(j), q_edge_index(j));
283  }
plotPSD.t
t
Definition: plotPSD.py:36

References j, oomph::FiniteElement::nodal_value(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_edge(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_index(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_node_number(), and plotPSD::t.

◆ Q_edge_conv() [1/2]

const unsigned oomph::TAxisymmetricPoroelasticityElement< 0 >::Q_edge_conv
private

Conversion scheme from an edge degree of freedom to the node it's stored at

◆ Q_edge_conv() [2/2]

const unsigned oomph::TAxisymmetricPoroelasticityElement< 1 >::Q_edge_conv
private

Conversion scheme from an edge degree of freedom to the node it's stored at

◆ q_edge_data_pt()

template<unsigned ORDER>
Vector<Data*> oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_data_pt ( ) const
inlinevirtual

Return vector of pointers to the Data objects that store the edge flux values

Implements oomph::AxisymmetricPoroelasticityEquations.

187  {
188  // It's the mid-side nodes:
189  Vector<Data*> data_pt(3);
190  data_pt[0] = node_pt(3);
191  data_pt[1] = node_pt(4);
192  data_pt[2] = node_pt(5);
193  return data_pt;
194  }

References oomph::FiniteElement::node_pt().

◆ q_edge_index()

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_index ( const unsigned &  j) const
inlinevirtual

Return the nodal index at which the jth edge unknown is stored.

Implements oomph::AxisymmetricPoroelasticityEquations.

211  {
212 #ifdef RANGE_CHECKING
213  if (j >= (nq_basis_edge()))
214  {
215  std::ostringstream error_message;
216  error_message << "Range Error: j " << j << " is not in the range (0,"
217  << nq_basis_edge() - 1 << ")";
218  throw OomphLibError(error_message.str(),
219  OOMPH_CURRENT_FUNCTION,
220  OOMPH_EXCEPTION_LOCATION);
221  }
222 #endif
223  return j % (ORDER + 1) + 2;
224  }

References j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_edge(), OOMPH_CURRENT_FUNCTION, and OOMPH_EXCEPTION_LOCATION.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::pin_q_edge_value(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_local_eqn(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::set_q_edge().

◆ q_edge_local_eqn()

template<unsigned ORDER>
int oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_local_eqn ( const unsigned &  j) const
inlinevirtual

Return the equation number of the j-th edge (flux) degree of freedom.

Implements oomph::AxisymmetricPoroelasticityEquations.

152  {
153 #ifdef RANGE_CHECKING
154  if (j >= nq_basis_edge())
155  {
156  std::ostringstream error_message;
157  error_message << "Range Error: j " << j << " is not in the range (0,"
158  << nq_basis_edge() - 1 << ")";
159  throw OomphLibError(error_message.str(),
160  OOMPH_CURRENT_FUNCTION,
161  OOMPH_EXCEPTION_LOCATION);
162  }
163 #endif
164  return this->nodal_local_eqn(q_edge_node_number(j), q_edge_index(j));
165  }
oomph::FiniteElement::nodal_local_eqn
int nodal_local_eqn(const unsigned &n, const unsigned &i) const
Definition: elements.h:1432

References j, oomph::FiniteElement::nodal_local_eqn(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_edge(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_index(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_node_number().

◆ q_edge_node_number()

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_node_number ( const unsigned &  j) const
inlinevirtual

Return the number of the node where the jth edge unknown is stored.

Implements oomph::AxisymmetricPoroelasticityEquations.

228  {
229 #ifdef RANGE_CHECKING
230  if (j >= (nq_basis_edge()))
231  {
232  std::ostringstream error_message;
233  error_message << "Range Error: j " << j << " is not in the range (0,"
234  << nq_basis_edge() - 1 << ")";
235  throw OomphLibError(error_message.str(),
236  OOMPH_CURRENT_FUNCTION,
237  OOMPH_EXCEPTION_LOCATION);
238  }
239 #endif
240  return Q_edge_conv[j / (ORDER + 1)];
241  }

References j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_edge(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, and oomph::TAxisymmetricPoroelasticityElement< ORDER >::Q_edge_conv.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::pin_q_edge_value(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_local_eqn(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::set_q_edge().

◆ q_internal() [1/2]

template<unsigned ORDER>
double oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal ( const unsigned &  j) const
inlinevirtual

Return the values of the internal degree of freedom.

Implements oomph::AxisymmetricPoroelasticityEquations.

287  {
288 #ifdef RANGE_CHECKING
289  if (j >= nq_basis_internal())
290  {
291  std::ostringstream error_message;
292  error_message << "Range Error: j " << j << " is not in the range (0,"
293  << nq_basis_internal() - 1 << ")";
294  throw OomphLibError(error_message.str(),
295  OOMPH_CURRENT_FUNCTION,
296  OOMPH_EXCEPTION_LOCATION);
297  }
298 #endif
299  return this->internal_data_pt(q_internal_index())->value(j);
300  }

References oomph::GeneralisedElement::internal_data_pt(), j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_internal(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_index(), and oomph::Data::value().

◆ q_internal() [2/2]

template<unsigned ORDER>
double oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal ( const unsigned &  t,
const unsigned &  j 
) const
inlinevirtual

Return the value of the j-th internal degree of freedom at time history level t

Implements oomph::AxisymmetricPoroelasticityEquations.

305  {
306 #ifdef RANGE_CHECKING
307  if (j >= nq_basis_internal())
308  {
309  std::ostringstream error_message;
310  error_message << "Range Error: j " << j << " is not in the range (0,"
311  << nq_basis_internal() - 1 << ")";
312  throw OomphLibError(error_message.str(),
313  OOMPH_CURRENT_FUNCTION,
314  OOMPH_EXCEPTION_LOCATION);
315  }
316 #endif
317  return this->internal_data_pt(q_internal_index())->value(t, j);
318  }

References oomph::GeneralisedElement::internal_data_pt(), j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_internal(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_index(), and oomph::Data::value().

◆ q_internal_data_pt()

template<unsigned ORDER>
Data* oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_data_pt ( ) const
inlinevirtual

Return pointer to the Data object that stores the internal flux values.

Implements oomph::AxisymmetricPoroelasticityEquations.

198  {
199  return this->internal_data_pt(Q_internal_data_index);
200  }

References oomph::GeneralisedElement::internal_data_pt().

◆ q_internal_index()

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_index ( ) const
inlinevirtual

Return the index of the internal data where the q_internal degrees of freedom are stored

Implements oomph::AxisymmetricPoroelasticityEquations.

205  {
206  return Q_internal_data_index;
207  }

References oomph::TAxisymmetricPoroelasticityElement< ORDER >::Q_internal_data_index.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::pin_q_internal_value(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_local_eqn(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::set_q_internal().

◆ q_internal_local_eqn()

template<unsigned ORDER>
int oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_local_eqn ( const unsigned &  j) const
inlinevirtual

Return the equation number of the j-th internal degree of freedom.

Implements oomph::AxisymmetricPoroelasticityEquations.

169  {
170 #ifdef RANGE_CHECKING
171  if (j >= nq_basis_internal())
172  {
173  std::ostringstream error_message;
174  error_message << "Range Error: j " << j << " is not in the range (0,"
175  << nq_basis_internal() - 1 << ")";
176  throw OomphLibError(error_message.str(),
177  OOMPH_CURRENT_FUNCTION,
178  OOMPH_EXCEPTION_LOCATION);
179  }
180 #endif
181  return internal_local_eqn(q_internal_index(), j);
182  }

References oomph::GeneralisedElement::internal_local_eqn(), j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_internal(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION, and oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_index().

◆ required_nvalue()

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::required_nvalue ( const unsigned &  n) const
inlinevirtual

Number of values required at node n.

Implements oomph::AxisymmetricPoroelasticityEquations.

86  {
87  return Initial_Nvalue[n];
88  }
oomph::TAxisymmetricPoroelasticityElement::Initial_Nvalue
static const unsigned Initial_Nvalue[]
The number of values stored at each node.
Definition: Taxisym_poroelasticity_elements.h:54

References oomph::TAxisymmetricPoroelasticityElement< ORDER >::Initial_Nvalue, and n.

◆ scale_basis()

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::scale_basis ( Shape &  basis) const
inlinevirtual

Scale the edge basis to allow arbitrary edge mappings.

Implements oomph::AxisymmetricPoroelasticityEquations.

556  {
557  // Storage for the lengths of the edges of the element
558  Vector<double> length(3, 0.0);
559 
560  // Temporary storage for the vertex positions
561  double x0, y0, x1, y1;
562 
563  // loop over the edges of the element and calculate their lengths (in x-y
564  // space)
565  for (unsigned i = 0; i < 3; i++)
566  {
567  x0 = this->node_pt(i)->x(0);
568  y0 = this->node_pt(i)->x(1);
569  x1 = this->node_pt((i + 1) % 3)->x(0);
570  y1 = this->node_pt((i + 1) % 3)->x(1);
571 
572  length[i] = std::sqrt(std::pow(y1 - y0, 2) + std::pow(x1 - x0, 2));
573  }
574 
575  // lengths of the sides of the reference element (in the same order as the
576  // basis functions)
577  const double ref_length[3] = {std::sqrt(2.0), 1, 1};
578 
579  // get the number of basis functions associated with the edges
580  unsigned n_q_basis_edge = nq_basis_edge();
581 
582  // rescale the edge basis functions to allow arbitrary edge mappings from
583  // element to ref. element
584  const unsigned n_index2 = basis.nindex2();
585  for (unsigned i = 0; i < n_index2; i++)
586  {
587  for (unsigned l = 0; l < n_q_basis_edge; l++)
588  {
589  basis(l, i) *=
590  (length[l / (ORDER + 1)] / ref_length[l / (ORDER + 1)]);
591  }
592  }
593  }
i
int i
Definition: BiCGSTAB_step_by_step.cpp:9
oomph::Node::x
double & x(const unsigned &i)
Return the i-th nodal coordinate.
Definition: nodes.h:1060
Eigen::bfloat16_impl::pow
EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC bfloat16 pow(const bfloat16 &a, const bfloat16 &b)
Definition: BFloat16.h:625
Global_parameters::x1
Vector< double > x1(const Vector< double > &coord)
Cartesian coordinates centered at the point (0.5,1)
Definition: poisson/poisson_with_singularity/two_d_poisson.cc:86
Global::x0
Vector< double > x0(2, 0.0)

References i, oomph::Shape::nindex2(), oomph::FiniteElement::node_pt(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::nq_basis_edge(), Eigen::bfloat16_impl::pow(), sqrt(), oomph::Node::x(), Global::x0, and Global_parameters::x1().

◆ set_p_value()

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::set_p_value ( const unsigned &  j,
const double &  value 
)
inlinevirtual

Set the jth pressure value.

Implements oomph::AxisymmetricPoroelasticityEquations.

550  {
551  this->internal_data_pt(P_internal_data_index)->set_value(j, value);
552  }

References oomph::GeneralisedElement::internal_data_pt(), j, oomph::Data::set_value(), and Eigen::value.

◆ set_q_edge() [1/2]

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::set_q_edge ( const unsigned &  j,
const double &  value 
)
inlinevirtual

Set the values of the j-th edge (flux) degree of freedom.

Implements oomph::AxisymmetricPoroelasticityEquations.

329  {
330  node_pt(q_edge_node_number(j))->set_value(q_edge_index(j), value);
331  }

References j, oomph::FiniteElement::node_pt(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_index(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_node_number(), oomph::Data::set_value(), and Eigen::value.

◆ set_q_edge() [2/2]

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::set_q_edge ( const unsigned &  t,
const unsigned &  j,
const double &  value 
)
inlinevirtual

Set the values of the j-th edge (flux) degree of freedom at time history level t

Implements oomph::AxisymmetricPoroelasticityEquations.

336  {
337  node_pt(q_edge_node_number(j))->set_value(t, q_edge_index(j), value);
338  }

References j, oomph::FiniteElement::node_pt(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_index(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_node_number(), oomph::Data::set_value(), plotPSD::t, and Eigen::value.

◆ set_q_internal() [1/2]

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::set_q_internal ( const unsigned &  j,
const double &  value 
)
inlinevirtual

Set the values of the j-th internal degree of freedom.

Implements oomph::AxisymmetricPoroelasticityEquations.

343  {
344  this->internal_data_pt(q_internal_index())->set_value(j, value);
345  }

References oomph::GeneralisedElement::internal_data_pt(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_index(), oomph::Data::set_value(), and Eigen::value.

◆ set_q_internal() [2/2]

template<unsigned ORDER>
void oomph::TAxisymmetricPoroelasticityElement< ORDER >::set_q_internal ( const unsigned &  t,
const unsigned &  j,
const double &  value 
)
inlinevirtual

Set the values of the j-th internal degree of freedom at time history level t

Implements oomph::AxisymmetricPoroelasticityEquations.

352  {
353  this->internal_data_pt(q_internal_index())->set_value(t, j, value);
354  }

References oomph::GeneralisedElement::internal_data_pt(), j, oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_index(), oomph::Data::set_value(), and Eigen::value.

◆ shape_basis_test_local()

template<unsigned ORDER>
double oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local ( const Vector< double > &  s,
Shape &  psi,
DShape &  dpsi,
Shape &  u_basis,
Shape &  u_test,
DShape &  du_basis_dx,
DShape &  du_test_dx,
Shape &  q_basis,
Shape &  q_test,
Shape &  p_basis,
Shape &  p_test,
Shape &  div_q_basis_ds,
Shape &  div_q_test_ds 
) const
inlineprotectedvirtual

Returns the geometric basis, and the u, p and divergence basis functions and test functions at local coordinate s

Implements oomph::AxisymmetricPoroelasticityEquations.

655  {
656  const unsigned n_q_basis = this->nq_basis();
657 
658  Shape q_basis_local(n_q_basis, 2);
659  this->get_q_basis_local(s, q_basis_local);
660  this->get_p_basis(s, p_basis);
661  this->get_div_q_basis_local(s, div_q_basis_ds);
662 
663  double J = this->transform_basis(s, q_basis_local, psi, dpsi, q_basis);
664 
665  // u_basis consists of the normal Lagrangian shape functions
666  u_basis = psi;
667  du_basis_dx = dpsi;
668 
669  u_test = psi;
670  du_test_dx = dpsi;
671 
672  q_test = q_basis;
673  p_test = p_basis;
674  div_q_test_ds = div_q_basis_ds;
675 
676  return J;
677  }
J
JacobiRotation< float > J
Definition: Jacobi_makeJacobi.cpp:3
oomph::AxisymmetricPoroelasticityEquations::transform_basis
double transform_basis(const Vector< double > &s, const Shape &q_basis_local, Shape &psi, DShape &dpsi, Shape &q_basis) const
Definition: axisym_poroelasticity_elements.cc:80
oomph::AxisymmetricPoroelasticityEquations::nq_basis
virtual unsigned nq_basis() const
Return the total number of computational basis functions for q.
Definition: axisym_poroelasticity_elements.h:365
oomph::TAxisymmetricPoroelasticityElement::get_p_basis
void get_p_basis(const Vector< double > &s, Shape &p_basis) const
Return the pressure basis.
oomph::TAxisymmetricPoroelasticityElement::get_q_basis_local
void get_q_basis_local(const Vector< double > &s, Shape &q_basis) const
Returns the local form of the q basis at local coordinate s.
oomph::TAxisymmetricPoroelasticityElement::get_div_q_basis_local
void get_div_q_basis_local(const Vector< double > &s, Shape &div_q_basis_ds) const

References oomph::TAxisymmetricPoroelasticityElement< ORDER >::get_div_q_basis_local(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::get_p_basis(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::get_q_basis_local(), J, oomph::AxisymmetricPoroelasticityEquations::nq_basis(), and oomph::AxisymmetricPoroelasticityEquations::transform_basis().

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local_at_knot().

◆ shape_basis_test_local_at_knot()

template<unsigned ORDER>
double oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local_at_knot ( const unsigned &  ipt,
Shape &  psi,
DShape &  dpsi,
Shape &  u_basis,
Shape &  u_test,
DShape &  du_basis_dx,
DShape &  du_test_dx,
Shape &  q_basis,
Shape &  q_test,
Shape &  p_basis,
Shape &  p_test,
Shape &  div_q_basis_ds,
Shape &  div_q_test_ds 
) const
inlineprotectedvirtual

Returns the geometric basis, and the u, p and divergence basis functions and test functions at integration point ipt

Implements oomph::AxisymmetricPoroelasticityEquations.

694  {
695  Vector<double> s(2);
696  for (unsigned i = 0; i < 2; i++)
697  {
698  s[i] = this->integral_pt()->knot(ipt, i);
699  }
700 
701  return shape_basis_test_local(s,
702  psi,
703  dpsi,
704  u_basis,
705  u_test,
706  du_basis_dx,
707  du_test_dx,
708  q_basis,
709  q_test,
710  p_basis,
711  p_test,
712  div_q_basis_ds,
713  div_q_test_ds);
714  }
oomph::FiniteElement::integral_pt
Integral *const & integral_pt() const
Return the pointer to the integration scheme (const version)
Definition: elements.h:1963
oomph::Integral::knot
virtual double knot(const unsigned &i, const unsigned &j) const =0
Return local coordinate s[j] of i-th integration point.
oomph::TAxisymmetricPoroelasticityElement::shape_basis_test_local
double shape_basis_test_local(const Vector< double > &s, Shape &psi, DShape &dpsi, Shape &u_basis, Shape &u_test, DShape &du_basis_dx, DShape &du_test_dx, Shape &q_basis, Shape &q_test, Shape &p_basis, Shape &p_test, Shape &div_q_basis_ds, Shape &div_q_test_ds) const
Definition: Taxisym_poroelasticity_elements.h:642

References i, oomph::FiniteElement::integral_pt(), oomph::Integral::knot(), s, and oomph::TAxisymmetricPoroelasticityElement< ORDER >::shape_basis_test_local().

◆ sign_edge() [1/2]

template<unsigned ORDER>
short& oomph::TAxisymmetricPoroelasticityElement< ORDER >::sign_edge ( const unsigned &  n)
inline

Accessor for the unit normal sign of edge n.

603  {
604  return Sign_edge[n];
605  }

References n, and oomph::TAxisymmetricPoroelasticityElement< ORDER >::Sign_edge.

◆ sign_edge() [2/2]

template<unsigned ORDER>
const short& oomph::TAxisymmetricPoroelasticityElement< ORDER >::sign_edge ( const unsigned &  n) const
inline

Accessor for the unit normal sign of edge n (const version)

597  {
598  return Sign_edge[n];
599  }

References n, and oomph::TAxisymmetricPoroelasticityElement< ORDER >::Sign_edge.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point().

◆ u_index_axisym_poroelasticity()

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::u_index_axisym_poroelasticity ( const unsigned &  j) const
inlinevirtual

Return the nodal index of the j-th solid displacement unknown [0: r; 1: z]

Implements oomph::AxisymmetricPoroelasticityEquations.

135  {
136 #ifdef RANGE_CHECKING
137  if (j >= 2)
138  {
139  std::ostringstream error_message;
140  error_message << "Range Error: j " << j << " is not in the range (0,1)";
141  throw OomphLibError(error_message.str(),
142  OOMPH_CURRENT_FUNCTION,
143  OOMPH_EXCEPTION_LOCATION);
144  }
145 #endif
146  return j;
147  }

References j, OOMPH_CURRENT_FUNCTION, and OOMPH_EXCEPTION_LOCATION.

◆ vertex_node_pt()

template<unsigned ORDER>
Node* oomph::TAxisymmetricPoroelasticityElement< ORDER >::vertex_node_pt ( const unsigned &  j) const
inlinevirtual

Pointer to the j-th vertex node in the element.

Reimplemented from oomph::FiniteElement.

629  {
630  return TElement<2, 3>::vertex_node_pt(j);
631  }

References j.

Member Data Documentation

◆ Face_index_of_edge_flux

template<unsigned ORDER>
const unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::Face_index_of_edge_flux[]
staticprivate

Face index associated with edge flux degree of freedom.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::face_index_of_q_edge_basis_fct().

◆ Flux_interpolation_point

template<unsigned ORDER>
const double oomph::TAxisymmetricPoroelasticityElement< ORDER >::Flux_interpolation_point[]
staticprivate

The points along each edge where the fluxes are taken to be.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point().

◆ Initial_Nvalue

template<unsigned ORDER>
const unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::Initial_Nvalue[]
staticprivate

The number of values stored at each node.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::required_nvalue().

◆ P_internal_data_index

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::P_internal_data_index
private

The internal data index where the p degrees of freedom are stored.

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::TAxisymmetricPoroelasticityElement().

◆ Q_edge_conv

template<unsigned ORDER>
const unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::Q_edge_conv[]
staticprivate

Conversion scheme from an edge degree of freedom to the node it's stored at

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_interpolation_point_global(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::edge_flux_node_pt(), oomph::TAxisymmetricPoroelasticityElement< ORDER >::face_local_coordinate_of_flux_interpolation_point(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_edge_node_number().

◆ Q_internal_data_index

template<unsigned ORDER>
unsigned oomph::TAxisymmetricPoroelasticityElement< ORDER >::Q_internal_data_index
private

The internal data index where the internal q degrees of freedom are stored

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::q_internal_index(), and oomph::TAxisymmetricPoroelasticityElement< ORDER >::TAxisymmetricPoroelasticityElement().

◆ Sign_edge

template<unsigned ORDER>
std::vector<short> oomph::TAxisymmetricPoroelasticityElement< ORDER >::Sign_edge
private

Unit normal signs associated with each edge to ensure inter-element continuity of the flux

Referenced by oomph::TAxisymmetricPoroelasticityElement< ORDER >::sign_edge().

The documentation for this class was generated from the following file: