ElasticAnnulusProblem< ELASTICITY_ELEMENT > Class Template Reference

Annular disk. More...

+ Inheritance diagram for ElasticAnnulusProblem< ELASTICITY_ELEMENT >:

Public Member Functions

 ElasticAnnulusProblem ()
 Constructor: More...
 
 ~ElasticAnnulusProblem ()
 Destructor (empty) More...
 
void actions_after_newton_solve ()
 Update function (empty) More...
 
void actions_before_newton_solve ()
 Update function (empty) More...
 
void create_pml_meshes ()
 Create PML meshes. More...
 
void actions_before_adapt ()
 Actions before adapt: Wipe the mesh of traction elements. More...
 
void actions_after_adapt ()
 Actions after adapt: Rebuild the mesh of traction elements. More...
 
void doc_solution (DocInfo &doc_info)
 Doc the solution. More...
 
 ElasticAnnulusProblem ()
 Constructor: More...
 
 ~ElasticAnnulusProblem ()
 Destructor (empty) More...
 
void actions_after_newton_solve ()
 Update function (empty) More...
 
void actions_before_newton_solve ()
 Update function (empty) More...
 
void create_pml_meshes ()
 Create PML meshes. More...
 
void actions_before_adapt ()
 Actions before adapt: Wipe the mesh of traction elements. More...
 
void actions_after_adapt ()
 Actions after adapt: Rebuild the mesh of traction elements. More...
 
void doc_solution (DocInfo &doc_info)
 Doc the solution. More...
 
- Public Member Functions inherited from oomph::Problem
virtual void debug_hook_fct (const unsigned &i)
 
void set_analytic_dparameter (double *const &parameter_pt)
 
void unset_analytic_dparameter (double *const &parameter_pt)
 
bool is_dparameter_calculated_analytically (double *const &parameter_pt)
 
void set_analytic_hessian_products ()
 
void unset_analytic_hessian_products ()
 
bool are_hessian_products_calculated_analytically ()
 
void set_pinned_values_to_zero ()
 
bool distributed () const
 
OomphCommunicator * communicator_pt ()
 access function to the oomph-lib communicator More...
 
const OomphCommunicator * communicator_pt () const
 access function to the oomph-lib communicator, const version More...
 
 Problem ()
 
 Problem (const Problem &dummy)=delete
 Broken copy constructor. More...
 
void operator= (const Problem &)=delete
 Broken assignment operator. More...
 
virtual ~Problem ()
 Virtual destructor to clean up memory. More...
 
Mesh *& mesh_pt ()
 Return a pointer to the global mesh. More...
 
Mesh *const & mesh_pt () const
 Return a pointer to the global mesh (const version) More...
 
Mesh *& mesh_pt (const unsigned &imesh)
 
Mesh *const & mesh_pt (const unsigned &imesh) const
 Return a pointer to the i-th submesh (const version) More...
 
unsigned nsub_mesh () const
 Return number of submeshes. More...
 
unsigned add_sub_mesh (Mesh *const &mesh_pt)
 
void flush_sub_meshes ()
 
void build_global_mesh ()
 
void rebuild_global_mesh ()
 
LinearSolver *& linear_solver_pt ()
 Return a pointer to the linear solver object. More...
 
LinearSolver *const & linear_solver_pt () const
 Return a pointer to the linear solver object (const version) More...
 
LinearSolver *& mass_matrix_solver_for_explicit_timestepper_pt ()
 
LinearSolver * mass_matrix_solver_for_explicit_timestepper_pt () const
 
EigenSolver *& eigen_solver_pt ()
 Return a pointer to the eigen solver object. More...
 
EigenSolver *const & eigen_solver_pt () const
 Return a pointer to the eigen solver object (const version) More...
 
Time *& time_pt ()
 Return a pointer to the global time object. More...
 
Time * time_pt () const
 Return a pointer to the global time object (const version). More...
 
double & time ()
 Return the current value of continuous time. More...
 
double time () const
 Return the current value of continuous time (const version) More...
 
TimeStepper *& time_stepper_pt ()
 
const TimeStepper * time_stepper_pt () const
 
TimeStepper *& time_stepper_pt (const unsigned &i)
 Return a pointer to the i-th timestepper. More...
 
ExplicitTimeStepper *& explicit_time_stepper_pt ()
 Return a pointer to the explicit timestepper. More...
 
unsigned long set_timestepper_for_all_data (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data=false)
 
virtual void shift_time_values ()
 Shift all values along to prepare for next timestep. More...
 
AssemblyHandler *& assembly_handler_pt ()
 Return a pointer to the assembly handler object. More...
 
AssemblyHandler *const & assembly_handler_pt () const
 Return a pointer to the assembly handler object (const version) More...
 
double & minimum_dt ()
 Access function to min timestep in adaptive timestepping. More...
 
double & maximum_dt ()
 Access function to max timestep in adaptive timestepping. More...
 
unsigned & max_newton_iterations ()
 Access function to max Newton iterations before giving up. More...
 
void problem_is_nonlinear (const bool &prob_lin)
 Access function to Problem_is_nonlinear. More...
 
double & max_residuals ()
 
bool & time_adaptive_newton_crash_on_solve_fail ()
 Access function for Time_adaptive_newton_crash_on_solve_fail. More...
 
double & newton_solver_tolerance ()
 
void add_time_stepper_pt (TimeStepper *const &time_stepper_pt)
 
void set_explicit_time_stepper_pt (ExplicitTimeStepper *const &explicit_time_stepper_pt)
 
void initialise_dt (const double &dt)
 
void initialise_dt (const Vector< double > &dt)
 
Data *& global_data_pt (const unsigned &i)
 Return a pointer to the the i-th global data object. More...
 
void add_global_data (Data *const &global_data_pt)
 
void flush_global_data ()
 
LinearAlgebraDistribution *const & dof_distribution_pt () const
 Return the pointer to the dof distribution (read-only) More...
 
unsigned long ndof () const
 Return the number of dofs. More...
 
unsigned ntime_stepper () const
 Return the number of time steppers. More...
 
unsigned nglobal_data () const
 Return the number of global data values. More...
 
unsigned self_test ()
 Self-test: Check meshes and global data. Return 0 for OK. More...
 
void enable_store_local_dof_pt_in_elements ()
 
void disable_store_local_dof_pt_in_elements ()
 
unsigned long assign_eqn_numbers (const bool &assign_local_eqn_numbers=true)
 
void describe_dofs (std::ostream &out= *(oomph_info.stream_pt())) const
 
void enable_discontinuous_formulation ()
 
void disable_discontinuous_formulation ()
 
void get_dofs (DoubleVector &dofs) const
 
void get_dofs (const unsigned &t, DoubleVector &dofs) const
 Return vector of the t'th history value of all dofs. More...
 
void set_dofs (const DoubleVector &dofs)
 Set the values of the dofs. More...
 
void set_dofs (const unsigned &t, DoubleVector &dofs)
 Set the history values of the dofs. More...
 
void set_dofs (const unsigned &t, Vector< double * > &dof_pt)
 
void add_to_dofs (const double &lambda, const DoubleVector &increment_dofs)
 Add lambda x incremenet_dofs[l] to the l-th dof. More...
 
double * global_dof_pt (const unsigned &i)
 
double & dof (const unsigned &i)
 i-th dof in the problem More...
 
double dof (const unsigned &i) const
 i-th dof in the problem (const version) More...
 
double *& dof_pt (const unsigned &i)
 Pointer to i-th dof in the problem. More...
 
double * dof_pt (const unsigned &i) const
 Pointer to i-th dof in the problem (const version) More...
 
virtual void get_inverse_mass_matrix_times_residuals (DoubleVector &Mres)
 
virtual void get_dvaluesdt (DoubleVector &f)
 
virtual void get_residuals (DoubleVector &residuals)
 Get the total residuals Vector for the problem. More...
 
virtual void get_jacobian (DoubleVector &residuals, DenseDoubleMatrix &jacobian)
 
virtual void get_jacobian (DoubleVector &residuals, CRDoubleMatrix &jacobian)
 
virtual void get_jacobian (DoubleVector &residuals, CCDoubleMatrix &jacobian)
 
virtual void get_jacobian (DoubleVector &residuals, SumOfMatrices &jacobian)
 
void get_fd_jacobian (DoubleVector &residuals, DenseMatrix< double > &jacobian)
 Get the full Jacobian by finite differencing. More...
 
void get_derivative_wrt_global_parameter (double *const &parameter_pt, DoubleVector &result)
 
void get_hessian_vector_products (DoubleVectorWithHaloEntries const &Y, Vector< DoubleVectorWithHaloEntries > const &C, Vector< DoubleVectorWithHaloEntries > &product)
 
void solve_eigenproblem (const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, Vector< DoubleVector > &eigenvector, const bool &steady=true)
 Solve the eigenproblem. More...
 
void solve_eigenproblem (const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, const bool &steady=true)
 
virtual void get_eigenproblem_matrices (CRDoubleMatrix &mass_matrix, CRDoubleMatrix &main_matrix, const double &shift=0.0)
 
void assign_eigenvector_to_dofs (DoubleVector &eigenvector)
 Assign the eigenvector passed to the function to the dofs. More...
 
void add_eigenvector_to_dofs (const double &epsilon, const DoubleVector &eigenvector)
 
void store_current_dof_values ()
 Store the current values of the degrees of freedom. More...
 
void restore_dof_values ()
 Restore the stored values of the degrees of freedom. More...
 
void enable_jacobian_reuse ()
 
void disable_jacobian_reuse ()
 Disable recycling of Jacobian in Newton iteration. More...
 
bool jacobian_reuse_is_enabled ()
 Is recycling of Jacobian in Newton iteration enabled? More...
 
bool & use_predictor_values_as_initial_guess ()
 
void newton_solve ()
 Use Newton method to solve the problem. More...
 
void enable_globally_convergent_newton_method ()
 enable globally convergent Newton method More...
 
void disable_globally_convergent_newton_method ()
 disable globally convergent Newton method More...
 
void newton_solve (unsigned const &max_adapt)
 
void steady_newton_solve (unsigned const &max_adapt=0)
 
void copy (Problem *orig_problem_pt)
 
virtual Problem * make_copy ()
 
virtual void read (std::ifstream &restart_file, bool &unsteady_restart)
 
virtual void read (std::ifstream &restart_file)
 
virtual void dump (std::ofstream &dump_file) const
 
void dump (const std::string &dump_file_name) const
 
void delete_all_external_storage ()
 
virtual void symmetrise_eigenfunction_for_adaptive_pitchfork_tracking ()
 
double * bifurcation_parameter_pt () const
 
void get_bifurcation_eigenfunction (Vector< DoubleVector > &eigenfunction)
 
void activate_fold_tracking (double *const &parameter_pt, const bool &block_solve=true)
 
void activate_bifurcation_tracking (double *const &parameter_pt, const DoubleVector &eigenvector, const bool &block_solve=true)
 
void activate_bifurcation_tracking (double *const &parameter_pt, const DoubleVector &eigenvector, const DoubleVector &normalisation, const bool &block_solve=true)
 
void activate_pitchfork_tracking (double *const &parameter_pt, const DoubleVector &symmetry_vector, const bool &block_solve=true)
 
void activate_hopf_tracking (double *const &parameter_pt, const bool &block_solve=true)
 
void activate_hopf_tracking (double *const &parameter_pt, const double &omega, const DoubleVector &null_real, const DoubleVector &null_imag, const bool &block_solve=true)
 
void deactivate_bifurcation_tracking ()
 
void reset_assembly_handler_to_default ()
 Reset the system to the standard non-augemented state. More...
 
double arc_length_step_solve (double *const &parameter_pt, const double &ds, const unsigned &max_adapt=0)
 
double arc_length_step_solve (Data *const &data_pt, const unsigned &data_index, const double &ds, const unsigned &max_adapt=0)
 
void reset_arc_length_parameters ()
 
int & sign_of_jacobian ()
 
void explicit_timestep (const double &dt, const bool &shift_values=true)
 Take an explicit timestep of size dt. More...
 
void unsteady_newton_solve (const double &dt)
 
void unsteady_newton_solve (const double &dt, const bool &shift_values)
 
void unsteady_newton_solve (const double &dt, const unsigned &max_adapt, const bool &first, const bool &shift=true)
 
double doubly_adaptive_unsteady_newton_solve (const double &dt, const double &epsilon, const unsigned &max_adapt, const bool &first, const bool &shift=true)
 
double doubly_adaptive_unsteady_newton_solve (const double &dt, const double &epsilon, const unsigned &max_adapt, const unsigned &suppress_resolve_after_spatial_adapt_flag, const bool &first, const bool &shift=true)
 
double adaptive_unsteady_newton_solve (const double &dt_desired, const double &epsilon)
 
double adaptive_unsteady_newton_solve (const double &dt_desired, const double &epsilon, const bool &shift_values)
 
void assign_initial_values_impulsive ()
 
void assign_initial_values_impulsive (const double &dt)
 
void calculate_predictions ()
 Calculate predictions. More...
 
void enable_mass_matrix_reuse ()
 
void disable_mass_matrix_reuse ()
 
bool mass_matrix_reuse_is_enabled ()
 Return whether the mass matrix is being reused. More...
 
void refine_uniformly (const Vector< unsigned > &nrefine_for_mesh)
 
void refine_uniformly (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)
 
void refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh)
 
void refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)
 
void refine_uniformly (DocInfo &doc_info)
 
void refine_uniformly_and_prune (DocInfo &doc_info)
 
void refine_uniformly ()
 
void refine_uniformly (const unsigned &i_mesh, DocInfo &doc_info)
 Do uniform refinement for submesh i_mesh with documentation. More...
 
void refine_uniformly (const unsigned &i_mesh)
 Do uniform refinement for submesh i_mesh without documentation. More...
 
void p_refine_uniformly (const Vector< unsigned > &nrefine_for_mesh)
 
void p_refine_uniformly (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)
 
void p_refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh)
 
void p_refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)
 
void p_refine_uniformly (DocInfo &doc_info)
 
void p_refine_uniformly_and_prune (DocInfo &doc_info)
 
void p_refine_uniformly ()
 
void p_refine_uniformly (const unsigned &i_mesh, DocInfo &doc_info)
 Do uniform p-refinement for submesh i_mesh with documentation. More...
 
void p_refine_uniformly (const unsigned &i_mesh)
 Do uniform p-refinement for submesh i_mesh without documentation. More...
 
void refine_selected_elements (const Vector< unsigned > &elements_to_be_refined)
 
void refine_selected_elements (const Vector< RefineableElement * > &elements_to_be_refined_pt)
 
void refine_selected_elements (const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined)
 
void refine_selected_elements (const unsigned &i_mesh, const Vector< RefineableElement * > &elements_to_be_refined_pt)
 
void refine_selected_elements (const Vector< Vector< unsigned >> &elements_to_be_refined)
 
void refine_selected_elements (const Vector< Vector< RefineableElement * >> &elements_to_be_refined_pt)
 
void p_refine_selected_elements (const Vector< unsigned > &elements_to_be_refined)
 
void p_refine_selected_elements (const Vector< PRefineableElement * > &elements_to_be_refined_pt)
 
void p_refine_selected_elements (const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined)
 
void p_refine_selected_elements (const unsigned &i_mesh, const Vector< PRefineableElement * > &elements_to_be_refined_pt)
 
void p_refine_selected_elements (const Vector< Vector< unsigned >> &elements_to_be_refined)
 
void p_refine_selected_elements (const Vector< Vector< PRefineableElement * >> &elements_to_be_refined_pt)
 
unsigned unrefine_uniformly ()
 
unsigned unrefine_uniformly (const unsigned &i_mesh)
 
void p_unrefine_uniformly (DocInfo &doc_info)
 
void p_unrefine_uniformly (const unsigned &i_mesh, DocInfo &doc_info)
 Do uniform p-unrefinement for submesh i_mesh without documentation. More...
 
void adapt (unsigned &n_refined, unsigned &n_unrefined)
 
void adapt ()
 
void p_adapt (unsigned &n_refined, unsigned &n_unrefined)
 
void p_adapt ()
 
void adapt_based_on_error_estimates (unsigned &n_refined, unsigned &n_unrefined, Vector< Vector< double >> &elemental_error)
 
void adapt_based_on_error_estimates (Vector< Vector< double >> &elemental_error)
 
void get_all_error_estimates (Vector< Vector< double >> &elemental_error)
 
void doc_errors (DocInfo &doc_info)
 Get max and min error for all elements in submeshes. More...
 
void doc_errors ()
 Get max and min error for all elements in submeshes. More...
 
void enable_info_in_newton_solve ()
 
void disable_info_in_newton_solve ()
 Disable the output of information when in the newton solver. More...
 
- Public Member Functions inherited from oomph::ExplicitTimeSteppableObject
 ExplicitTimeSteppableObject ()
 Empty constructor. More...
 
 ExplicitTimeSteppableObject (const ExplicitTimeSteppableObject &)=delete
 Broken copy constructor. More...
 
void operator= (const ExplicitTimeSteppableObject &)=delete
 Broken assignment operator. More...
 
virtual ~ExplicitTimeSteppableObject ()
 Empty destructor. More...
 
virtual void actions_before_explicit_stage ()
 
virtual void actions_after_explicit_stage ()
 

Private Member Functions

void complete_problem_setup ()
 Helper function to complete problem setup. More...
 
void complete_problem_setup ()
 Helper function to complete problem setup. More...
 

Private Attributes

RefineableTriangleMesh< ELASTICITY_ELEMENT > * Solid_mesh_pt
 Pointer to refineable solid mesh. More...
 
Mesh * PML_right_mesh_pt
 Pointer to the right PML mesh. More...
 
Mesh * PML_top_mesh_pt
 Pointer to the top PML mesh. More...
 
Mesh * PML_left_mesh_pt
 Pointer to the left PML mesh. More...
 
Mesh * PML_bottom_mesh_pt
 Pointer to the bottom PML mesh. More...
 
Mesh * PML_top_right_mesh_pt
 Pointer to the top right corner PML mesh. More...
 
Mesh * PML_top_left_mesh_pt
 Pointer to the top left corner PML mesh. More...
 
Mesh * PML_bottom_right_mesh_pt
 Pointer to the bottom right corner PML mesh. More...
 
Mesh * PML_bottom_left_mesh_pt
 Pointer to the bottom left corner PML mesh. More...
 
DocInfo Doc_info
 DocInfo object for output. More...
 
unsigned Upper_inner_boundary_id
 Boundary ID of upper inner boundary. More...
 
unsigned Upper_outer_boundary_id
 Boundary ID of upper outer boundary. More...
 
unsigned Lower_inner_boundary_id
 Boundary ID of lower inner boundary. More...
 
unsigned Lower_outer_boundary_id
 Boundary ID of lower outer boundary. More...
 
RectangularQuadMesh< ELASTICITY_ELEMENT > * Solid_mesh_pt
 Pointer to solid mesh. More...
 

Additional Inherited Members

- Public Types inherited from oomph::Problem
typedef void(* SpatialErrorEstimatorFctPt) (Mesh *&mesh_pt, Vector< double > &elemental_error)
 Function pointer for spatial error estimator. More...
 
typedef void(* SpatialErrorEstimatorWithDocFctPt) (Mesh *&mesh_pt, Vector< double > &elemental_error, DocInfo &doc_info)
 Function pointer for spatial error estimator with doc. More...
 
- Public Attributes inherited from oomph::Problem
bool Shut_up_in_newton_solve
 
- Static Public Attributes inherited from oomph::Problem
static bool Suppress_warning_about_actions_before_read_unstructured_meshes
 
- Protected Types inherited from oomph::Problem
enum  Assembly_method {
  Perform_assembly_using_vectors_of_pairs , Perform_assembly_using_two_vectors , Perform_assembly_using_maps , Perform_assembly_using_lists ,
  Perform_assembly_using_two_arrays
}
 Enumerated flags to determine which sparse assembly method is used. More...
 
- Protected Member Functions inherited from oomph::Problem
unsigned setup_element_count_per_dof ()
 
virtual void sparse_assemble_row_or_column_compressed (Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag)
 
virtual void actions_before_newton_convergence_check ()
 
virtual void actions_before_newton_step ()
 
virtual void actions_after_newton_step ()
 
virtual void actions_before_implicit_timestep ()
 
virtual void actions_after_implicit_timestep ()
 
virtual void actions_after_implicit_timestep_and_error_estimation ()
 
virtual void actions_before_explicit_timestep ()
 Actions that should be performed before each explicit time step. More...
 
virtual void actions_after_explicit_timestep ()
 Actions that should be performed after each explicit time step. More...
 
virtual void actions_before_read_unstructured_meshes ()
 
virtual void actions_after_read_unstructured_meshes ()
 
virtual void actions_after_change_in_global_parameter (double *const &parameter_pt)
 
virtual void actions_after_change_in_bifurcation_parameter ()
 
virtual void actions_after_parameter_increase (double *const &parameter_pt)
 
double & dof_derivative (const unsigned &i)
 
double & dof_current (const unsigned &i)
 
virtual void set_initial_condition ()
 
virtual double global_temporal_error_norm ()
 
unsigned newton_solve_continuation (double *const &parameter_pt)
 
unsigned newton_solve_continuation (double *const &parameter_pt, DoubleVector &z)
 
void calculate_continuation_derivatives (double *const &parameter_pt)
 
void calculate_continuation_derivatives (const DoubleVector &z)
 
void calculate_continuation_derivatives_fd (double *const &parameter_pt)
 
bool does_pointer_correspond_to_problem_data (double *const &parameter_pt)
 
void set_consistent_pinned_values_for_continuation ()
 
- Protected Attributes inherited from oomph::Problem
Vector< Problem * > Copy_of_problem_pt
 
std::map< double *, bool > Calculate_dparameter_analytic
 
bool Calculate_hessian_products_analytic
 
LinearAlgebraDistribution * Dof_distribution_pt
 
Vector< double * > Dof_pt
 Vector of pointers to dofs. More...
 
DoubleVectorWithHaloEntries Element_count_per_dof
 
double Relaxation_factor
 
double Newton_solver_tolerance
 
unsigned Max_newton_iterations
 Maximum number of Newton iterations. More...
 
unsigned Nnewton_iter_taken
 
Vector< double > Max_res
 Maximum residuals at start and after each newton iteration. More...
 
double Max_residuals
 
bool Time_adaptive_newton_crash_on_solve_fail
 
bool Jacobian_reuse_is_enabled
 Is re-use of Jacobian in Newton iteration enabled? Default: false. More...
 
bool Jacobian_has_been_computed
 
bool Problem_is_nonlinear
 
bool Pause_at_end_of_sparse_assembly
 
bool Doc_time_in_distribute
 
unsigned Sparse_assembly_method
 
unsigned Sparse_assemble_with_arrays_initial_allocation
 
unsigned Sparse_assemble_with_arrays_allocation_increment
 
Vector< Vector< unsigned > > Sparse_assemble_with_arrays_previous_allocation
 
double Numerical_zero_for_sparse_assembly
 
double FD_step_used_in_get_hessian_vector_products
 
bool Mass_matrix_reuse_is_enabled
 
bool Mass_matrix_has_been_computed
 
bool Discontinuous_element_formulation
 
double Minimum_dt
 Minimum desired dt: if dt falls below this value, exit. More...
 
double Maximum_dt
 Maximum desired dt. More...
 
double DTSF_max_increase
 
double DTSF_min_decrease
 
double Minimum_dt_but_still_proceed
 
bool Scale_arc_length
 Boolean to control whether arc-length should be scaled. More...
 
double Desired_proportion_of_arc_length
 Proportion of the arc-length to taken by the parameter. More...
 
double Theta_squared
 
int Sign_of_jacobian
 Storage for the sign of the global Jacobian. More...
 
double Continuation_direction
 
double Parameter_derivative
 Storage for the derivative of the global parameter wrt arc-length. More...
 
double Parameter_current
 Storage for the present value of the global parameter. More...
 
bool Use_continuation_timestepper
 Boolean to control original or new storage of dof stuff. More...
 
unsigned Dof_derivative_offset
 
unsigned Dof_current_offset
 
Vector< double > Dof_derivative
 Storage for the derivative of the problem variables wrt arc-length. More...
 
Vector< double > Dof_current
 Storage for the present values of the variables. More...
 
double Ds_current
 Storage for the current step value. More...
 
unsigned Desired_newton_iterations_ds
 
double Minimum_ds
 Minimum desired value of arc-length. More...
 
bool Bifurcation_detection
 Boolean to control bifurcation detection via determinant of Jacobian. More...
 
bool Bisect_to_find_bifurcation
 Boolean to control wheter bisection is used to located bifurcation. More...
 
bool First_jacobian_sign_change
 Boolean to indicate whether a sign change has occured in the Jacobian. More...
 
bool Arc_length_step_taken
 Boolean to indicate whether an arc-length step has been taken. More...
 
bool Use_finite_differences_for_continuation_derivatives
 
OomphCommunicator * Communicator_pt
 The communicator for this problem. More...
 
bool Always_take_one_newton_step
 
double Timestep_reduction_factor_after_nonconvergence
 
bool Keep_temporal_error_below_tolerance
 
- Static Protected Attributes inherited from oomph::Problem
static ContinuationStorageScheme Continuation_time_stepper
 Storage for the single static continuation timestorage object. More...
 

Detailed Description

template<class ELASTICITY_ELEMENT>
class ElasticAnnulusProblem< ELASTICITY_ELEMENT >

Annular disk.

Constructor & Destructor Documentation

◆ ElasticAnnulusProblem() [1/2]

template<class ELASTICITY_ELEMENT >
ElasticAnnulusProblem< ELASTICITY_ELEMENT >::ElasticAnnulusProblem

Constructor:

Number of elements in x direction in the bulk mesh

Number of elements in y direction in the bulk mesh

Start and end spatial coordinates of the bulk mesh in x direction

Start and end spatial coordinates of the bulk mesh in y direction

337 {
338 
339  // Solid mesh
340  //-----------
341 
342  // Create circle representing inner boundary
343  double a=0.2;
344  double x_c=0.0;
345  double y_c=0.0;
346  Circle* inner_circle_pt=new Circle(x_c,y_c,a);
347 
348  // Outer boundary
349  //---------------
350  TriangleMeshClosedCurve* outer_boundary_pt=0;
351 
352  unsigned n_segments = 16;
353  Vector<TriangleMeshCurveSection*> outer_boundary_line_pt(4);
354 
355  // Each polyline only has three vertices, provide storage for their
356  // coordinates
357  Vector<Vector<double> > vertex_coord(2);
358  for(unsigned i=0;i<2;i++)
359  {
360  vertex_coord[i].resize(2);
361  }
362 
363  // First polyline
364  vertex_coord[0][0]=-2.0;
365  vertex_coord[0][1]=-2.0;
366  vertex_coord[1][0]=-2.0;
367  vertex_coord[1][1]=2.0;
368 
369  // Build the 1st boundary polyline
370  unsigned boundary_id=2;
371  outer_boundary_line_pt[0] = new TriangleMeshPolyLine(vertex_coord,
372  boundary_id);
373 
374  // Second boundary polyline
375  vertex_coord[0][0]=-2.0;
376  vertex_coord[0][1]=2.0;
377  vertex_coord[1][0]=2.0;
378  vertex_coord[1][1]=2.0;
379 
380  // Build the 2nd boundary polyline
381  boundary_id=3;
382  outer_boundary_line_pt[1] = new TriangleMeshPolyLine(vertex_coord,
383  boundary_id);
384 
385  // Third boundary polyline
386  vertex_coord[0][0]=2.0;
387  vertex_coord[0][1]=2.0;
388  vertex_coord[1][0]=2.0;
389  vertex_coord[1][1]=-2.0;
390 
391  // Build the 3rd boundary polyline
392  boundary_id=4;
393  outer_boundary_line_pt[2] = new TriangleMeshPolyLine(vertex_coord,
394  boundary_id);
395 
396  // Fourth boundary polyline
397  vertex_coord[0][0]=2.0;
398  vertex_coord[0][1]=-2.0;
399  vertex_coord[1][0]=-2.0;
400  vertex_coord[1][1]=-2.0;
401 
402  // Build the 4th boundary polyline
403  boundary_id=5;
404  outer_boundary_line_pt[3] = new TriangleMeshPolyLine(vertex_coord,
405  boundary_id);
406 
407  // Create the triangle mesh polygon for outer boundary
408  outer_boundary_pt = new TriangleMeshPolygon(outer_boundary_line_pt);
409 
410  // Inner circular boundary
411  //------------------------
412  Vector<TriangleMeshCurveSection*> inner_boundary_line_pt(2);
413 
414  // The intrinsic coordinates for the beginning and end of the curve
415  double s_start = 0.0;
416  double s_end = MathematicalConstants::Pi;
417  boundary_id = 0;
418  inner_boundary_line_pt[0]=
419  new TriangleMeshCurviLine(inner_circle_pt,
420  s_start,
421  s_end,
422  n_segments,
423  boundary_id);
424 
425  // The intrinsic coordinates for the beginning and end of the curve
426  s_start = MathematicalConstants::Pi;
427  s_end = 2.0*MathematicalConstants::Pi;
428  boundary_id = 1;
429  inner_boundary_line_pt[1]=
430  new TriangleMeshCurviLine(inner_circle_pt,
431  s_start,
432  s_end,
433  n_segments,
434  boundary_id);
435 
436 
437  // Combine to hole
438  //----------------
440  Vector<double> hole_coords(2);
441  hole_coords[0]=0.0;
442  hole_coords[1]=0.0;
443  hole_pt[0]=new TriangleMeshClosedCurve(inner_boundary_line_pt,
444  hole_coords);
445 
446 
447  // Use the TriangleMeshParameters object for helping on the manage
448  // of the TriangleMesh parameters. The only parameter that needs to take
449  // is the outer boundary.
450  TriangleMeshParameters triangle_mesh_parameters(outer_boundary_pt);
451 
452  // Specify the closed curve using the TriangleMeshParameters object
453  triangle_mesh_parameters.internal_closed_curve_pt() = hole_pt;
454 
455  // Target element size in bulk mesh
456  triangle_mesh_parameters.element_area() = Global_Parameters::Element_area;
457 
458 
459 
460 #ifdef ADAPTIVE
461 
462  // Build the mesh
463  Solid_mesh_pt=new
464  RefineableTriangleMesh<ELASTICITY_ELEMENT>(triangle_mesh_parameters);
465 
466  // Set error estimator
468 
469  // Choose error tolerances to force some uniform refinement
472 
473 #else
474 
475  // Build the mesh
476  Solid_mesh_pt=new
477  TriangleMesh<ELASTICITY_ELEMENT>(triangle_mesh_parameters);
478 
479 #endif
480 
481  // Create the main triangular mesh
483 
484  // Create PML meshes and add them to the global mesh
486 
487  // Build the entire mesh from its submeshes
489 
490  // Let's have a look where the boundaries are
491  this->mesh_pt()->output("global_mesh.dat");
492  this->mesh_pt()->output_boundaries("global_mesh_boundary.dat");
493 
494  // Complete problem setup
496 
497  //Assign equation numbers
498  cout << assign_eqn_numbers() << std::endl;
499 
500  // Set output directory
502 
503 } //end_of_constructor
int i
Definition: BiCGSTAB_step_by_step.cpp:9
void complete_problem_setup()
Helper function to complete problem setup.
Definition: time_harmonic_elasticity_driver.cc:512
void create_pml_meshes()
Create PML meshes.
Definition: time_harmonic_elasticity_driver.cc:752
RefineableTriangleMesh< ELASTICITY_ELEMENT > * Solid_mesh_pt
Pointer to refineable solid mesh.
Definition: time_harmonic_elasticity_driver.cc:281
DocInfo Doc_info
DocInfo object for output.
Definition: time_harmonic_elasticity_driver.cc:315
Definition: geom_objects.h:873
void set_directory(const std::string &directory)
Definition: oomph_utilities.cc:298
void output(std::ostream &outfile)
Output for all elements.
Definition: mesh.cc:2027
void output_boundaries(std::ostream &outfile)
Output the nodes on the boundaries (into separate tecplot zones)
Definition: mesh.cc:1064
unsigned add_sub_mesh(Mesh *const &mesh_pt)
Definition: problem.h:1330
void build_global_mesh()
Definition: problem.cc:1493
Mesh *& mesh_pt()
Return a pointer to the global mesh.
Definition: problem.h:1280
unsigned long assign_eqn_numbers(const bool &assign_local_eqn_numbers=true)
Definition: problem.cc:1989
double & min_permitted_error()
Definition: refineable_mesh.h:156
double & max_permitted_error()
Definition: refineable_mesh.h:163
ErrorEstimator *& spatial_error_estimator_pt()
Access to spatial error estimator.
Definition: refineable_mesh.h:143
Base class defining a closed curve for the Triangle mesh generation.
Definition: unstructured_two_d_mesh_geometry_base.h:1339
Definition: unstructured_two_d_mesh_geometry_base.h:662
Definition: triangle_mesh.template.h:94
Class defining a polyline for use in Triangle Mesh generation.
Definition: unstructured_two_d_mesh_geometry_base.h:868
Class defining a closed polygon for the Triangle mesh generation.
Definition: unstructured_two_d_mesh_geometry_base.h:1451
Definition: oomph-lib/src/generic/Vector.h:58
Definition: error_estimator.h:266
const Scalar * a
Definition: level2_cplx_impl.h:32
double Pi
Definition: two_d_biharmonic.cc:235
string Directory
Output directory.
Definition: acoustic_fsi.cc:101
double Element_area
helper to set target mesh element size
Definition: time_harmonic_elasticity_driver.cc:58

References a, Global_Parameters::Directory, GlobalParameters::Doc_info, Global_Parameters::Element_area, oomph::TriangleMeshParameters::element_area(), i, oomph::TriangleMeshParameters::internal_closed_curve_pt(), BiharmonicTestFunctions2::Pi, and oomph::DocInfo::set_directory().

◆ ~ElasticAnnulusProblem() [1/2]

template<class ELASTICITY_ELEMENT >
ElasticAnnulusProblem< ELASTICITY_ELEMENT >::~ElasticAnnulusProblem ( )
inline

Destructor (empty)

253 {}

◆ ElasticAnnulusProblem() [2/2]

template<class ELASTICITY_ELEMENT >
ElasticAnnulusProblem< ELASTICITY_ELEMENT >::ElasticAnnulusProblem ( )

Constructor:

◆ ~ElasticAnnulusProblem() [2/2]

template<class ELASTICITY_ELEMENT >
ElasticAnnulusProblem< ELASTICITY_ELEMENT >::~ElasticAnnulusProblem ( )
inline

Destructor (empty)

150 {}

Member Function Documentation

◆ actions_after_adapt() [1/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::actions_after_adapt
virtual

Actions after adapt: Rebuild the mesh of traction elements.

Actions after adapt: complete problem setup.

Reimplemented from oomph::Problem.

612 {
613 
614  // Build PML meshes and add them to the global mesh
616 
617  // Build the entire mesh from its submeshes
619 
620  // Complete problem setup
622 
623 }// end of actions_after_adapt
void rebuild_global_mesh()
Definition: problem.cc:1533

◆ actions_after_adapt() [2/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::actions_after_adapt ( )
virtual

Actions after adapt: Rebuild the mesh of traction elements.

Reimplemented from oomph::Problem.

◆ actions_after_newton_solve() [1/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::actions_after_newton_solve ( )
inlinevirtual

Update function (empty)

Reimplemented from oomph::Problem.

256 {}

◆ actions_after_newton_solve() [2/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::actions_after_newton_solve ( )
inlinevirtual

Update function (empty)

Reimplemented from oomph::Problem.

153 {}

◆ actions_before_adapt() [1/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::actions_before_adapt
virtual

Actions before adapt: Wipe the mesh of traction elements.

Actions before adapt: empty.

Reimplemented from oomph::Problem.

572 {
573  // Before adapting the added PML meshes must be removed
574  // as they are not refineable and are to be rebuilt from the
575  // newly refined triangular mesh
576  delete PML_right_mesh_pt;
578  delete PML_top_mesh_pt;
579  PML_top_mesh_pt=0;
580  delete PML_left_mesh_pt;
582  delete PML_bottom_mesh_pt;
584  delete PML_top_right_mesh_pt;
586  delete PML_top_left_mesh_pt;
592 
593  // Rebuild the Problem's global mesh from its various sub-meshes
594  // but first flush all its submeshes
596 
597  // Then add the triangular mesh back
599 
600  // Rebuild the global mesh such that it now stores
601  // the triangular mesh only
603 }// end of actions_before_adapt
Mesh * PML_bottom_right_mesh_pt
Pointer to the bottom right corner PML mesh.
Definition: time_harmonic_elasticity_driver.cc:309
Mesh * PML_top_mesh_pt
Pointer to the top PML mesh.
Definition: time_harmonic_elasticity_driver.cc:294
Mesh * PML_bottom_mesh_pt
Pointer to the bottom PML mesh.
Definition: time_harmonic_elasticity_driver.cc:300
Mesh * PML_bottom_left_mesh_pt
Pointer to the bottom left corner PML mesh.
Definition: time_harmonic_elasticity_driver.cc:312
Mesh * PML_left_mesh_pt
Pointer to the left PML mesh.
Definition: time_harmonic_elasticity_driver.cc:297
Mesh * PML_top_right_mesh_pt
Pointer to the top right corner PML mesh.
Definition: time_harmonic_elasticity_driver.cc:303
Mesh * PML_top_left_mesh_pt
Pointer to the top left corner PML mesh.
Definition: time_harmonic_elasticity_driver.cc:306
Mesh * PML_right_mesh_pt
Pointer to the right PML mesh.
Definition: time_harmonic_elasticity_driver.cc:291
void flush_sub_meshes()
Definition: problem.h:1339

◆ actions_before_adapt() [2/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::actions_before_adapt ( )
virtual

Actions before adapt: Wipe the mesh of traction elements.

Reimplemented from oomph::Problem.

◆ actions_before_newton_solve() [1/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::actions_before_newton_solve ( )
inlinevirtual

Update function (empty)

Reimplemented from oomph::Problem.

259 {}

◆ actions_before_newton_solve() [2/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::actions_before_newton_solve ( )
inlinevirtual

Update function (empty)

Reimplemented from oomph::Problem.

156 {}

◆ complete_problem_setup() [1/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::complete_problem_setup
private

Helper function to complete problem setup.

Complete problem setup.

Upcast from PMLElement to time harmonic linear elasticity bulk element

Boundaries with id 0 and 1 represent the interior boundary and these are the only ones that need to be processed, hence the loop below only considers nodes on these two boundaries.

513 {
514 
515 #ifdef ADAPTIVE
516 
517  // Min element size allowed during adaptation
519  {
520  Solid_mesh_pt->min_element_size()=1.0e-5;
521  }
522 
523 #endif
524 
525  //Assign the physical properties to the elements
526  //----------------------------------------------
527  unsigned nel=this->mesh_pt()->nelement();
528  for (unsigned e=0;e<nel;e++)
529  {
534  (mesh_pt()->element_pt(e));
535 
536  // Set the constitutive law
538 
539  // Square of non-dim frequency
541  } // end_of_assignment
542 
546  for(unsigned b=0;b<2;b++)
547  {
548  unsigned n_node = Solid_mesh_pt->nboundary_node(b);
549  for (unsigned n=0;n<n_node;n++)
550  {
552  Vector<double> x_node(2);
553  x_node[0]=nod_pt->x(0);
554  x_node[1]=nod_pt->x(1);
555  Vector<double> u_exact(4);
556  Global_Parameters::exact_u(x_node,u_exact);
557 
558  for (unsigned k=0;k<4;k++)
559  {
560  nod_pt->pin(k);
561  nod_pt->set_value(k,u_exact[k]);
562  }
563  }
564  }
565 } // end_of_complete_setup
const unsigned n
Definition: CG3DPackingUnitTest.cpp:11
Array< double, 1, 3 > e(1./3., 0.5, 2.)
Scalar * b
Definition: benchVecAdd.cpp:17
void pin(const unsigned &i)
Pin the i-th stored variable.
Definition: nodes.h:385
void set_value(const unsigned &i, const double &value_)
Definition: nodes.h:271
unsigned long nboundary_node(const unsigned &ibound) const
Return number of nodes on a particular boundary.
Definition: mesh.h:833
GeneralisedElement *& element_pt(const unsigned long &e)
Return pointer to element e.
Definition: mesh.h:448
Node *& boundary_node_pt(const unsigned &b, const unsigned &n)
Return pointer to node n on boundary b.
Definition: mesh.h:493
unsigned long nelement() const
Return number of elements in the mesh.
Definition: mesh.h:590
Definition: nodes.h:906
double & x(const unsigned &i)
Return the i-th nodal coordinate.
Definition: nodes.h:1060
double *& omega_sq_pt()
Access function for square of non-dim frequency.
Definition: pml_time_harmonic_linear_elasticity_elements.h:206
PMLTimeHarmonicIsotropicElasticityTensor *& elasticity_tensor_pt()
Return the pointer to the elasticity_tensor.
Definition: pml_time_harmonic_linear_elasticity_elements.h:179
Definition: pml_time_harmonic_linear_elasticity_elements.h:448
double & min_element_size()
Min element size allowed during adaptation.
Definition: triangle_mesh.template.h:2483
char char char int int * k
Definition: level2_impl.h:374
void exact_u(const Vector< double > &x, Vector< double > &u)
Exact solution as a Vector: {u_x_real, u_y_real, u_x_imag, u_y_imag}.
Definition: time_harmonic_elasticity_driver.cc:152
Vector< TimeHarmonicIsotropicElasticityTensor * > E_pt
The elasticity tensors for the two regions.
Definition: unstructured_acoustic_fsi.cc:135
double Omega_sq
Square of the frequency of the time dependence.
Definition: axisym_linear_elasticity/cylinder/cylinder.cc:56
bool command_line_flag_has_been_set(const std::string &flag)
Definition: oomph_utilities.cc:501

References b, oomph::CommandLineArgs::command_line_flag_has_been_set(), e(), Global_Parameters::E_pt, oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::elasticity_tensor_pt(), Global_Parameters::exact_u(), k, n, Global_Parameters::Omega_sq, oomph::PMLTimeHarmonicLinearElasticityEquationsBase< DIM >::omega_sq_pt(), oomph::Data::pin(), oomph::Data::set_value(), and oomph::Node::x().

◆ complete_problem_setup() [2/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::complete_problem_setup ( )
private

Helper function to complete problem setup.

◆ create_pml_meshes() [1/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::create_pml_meshes

Create PML meshes.

Create PML meshes and add them to the problem's sub-meshes.

753 {
754 
755  // Bulk mesh left boundary id
756  unsigned int left_boundary_id = 2;
757 
758  // Bulk mesh top boundary id
759  unsigned int top_boundary_id = 3;
760 
761  // Bulk mesh right boundary id
762  unsigned int right_boundary_id = 4;
763 
764  // Bulk mesh bottom boundary id
765  unsigned int bottom_boundary_id = 5;
766 
767  // Build the PML meshes based on the new adapted triangular mesh
771  (Solid_mesh_pt, right_boundary_id,
774 
775  PML_top_mesh_pt =
778  (Solid_mesh_pt, top_boundary_id,
781 
785  (Solid_mesh_pt, left_boundary_id,
788 
792  (Solid_mesh_pt, bottom_boundary_id,
795 
796  // Add submeshes to the global mesh
801 
802 // Rebuild corner PML meshes
803 
808  Solid_mesh_pt, right_boundary_id);
809 
814  Solid_mesh_pt, right_boundary_id);
815 
820  Solid_mesh_pt, left_boundary_id);
821 
826  Solid_mesh_pt, left_boundary_id);
827 
828  // Add submeshes to the global mesh
833 
834 } // end of create_pml_meshes
Definition: pml_meshes.h:48
double Width_x_right_pml
Definition: time_harmonic_elasticity_driver.cc:83
double Width_y_top_pml
Definition: time_harmonic_elasticity_driver.cc:84
double Width_x_left_pml
Definition: time_harmonic_elasticity_driver.cc:85
unsigned N_x_right_pml
PML width in elements for the right layer.
Definition: time_harmonic_elasticity_driver.cc:69
double Width_y_bottom_pml
Definition: time_harmonic_elasticity_driver.cc:86
unsigned N_y_bottom_pml
PML width in elements for the left layer.
Definition: time_harmonic_elasticity_driver.cc:78
unsigned N_x_left_pml
PML width in elements for the left layer.
Definition: time_harmonic_elasticity_driver.cc:75
unsigned N_y_top_pml
PML width in elements for the top layer.
Definition: time_harmonic_elasticity_driver.cc:72
Mesh * create_bottom_right_pml_mesh(Mesh *pml_right_mesh_pt, Mesh *pml_bottom_mesh_pt, Mesh *bulk_mesh_pt, const unsigned &right_boundary_id, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Definition: pml_meshes.h:2103
Mesh * create_top_right_pml_mesh(Mesh *pml_right_mesh_pt, Mesh *pml_top_mesh_pt, Mesh *bulk_mesh_pt, const unsigned &right_boundary_id, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Definition: pml_meshes.h:1968
Mesh * create_top_pml_mesh(Mesh *bulk_mesh_pt, const unsigned &top_boundary_id, const unsigned &n_y_top_pml, const double &width_y_top_pml, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Definition: pml_meshes.h:1646
Mesh * create_top_left_pml_mesh(Mesh *pml_left_mesh_pt, Mesh *pml_top_mesh_pt, Mesh *bulk_mesh_pt, const unsigned &left_boundary_id, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Definition: pml_meshes.h:2234
Mesh * create_bottom_left_pml_mesh(Mesh *pml_left_mesh_pt, Mesh *pml_bottom_mesh_pt, Mesh *bulk_mesh_pt, const unsigned &left_boundary_id, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Definition: pml_meshes.h:2367
Mesh * create_bottom_pml_mesh(Mesh *bulk_mesh_pt, const unsigned &bottom_boundary_id, const unsigned &n_y_bottom_pml, const double &width_y_bottom_pml, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Definition: pml_meshes.h:1860
Mesh * create_left_pml_mesh(Mesh *bulk_mesh_pt, const unsigned &left_boundary_id, const unsigned &n_x_left_pml, const double &width_x_left_pml, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Definition: pml_meshes.h:1752
Mesh * create_right_pml_mesh(Mesh *bulk_mesh_pt, const unsigned &right_boundary_id, const unsigned &n_x_right_pml, const double &width_x_right_pml, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Definition: pml_meshes.h:1539

References oomph::TwoDimensionalPMLHelper::create_bottom_left_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_bottom_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_bottom_right_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_left_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_right_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_top_left_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_top_pml_mesh(), oomph::TwoDimensionalPMLHelper::create_top_right_pml_mesh(), Global_Parameters::N_x_left_pml, Global_Parameters::N_x_right_pml, Global_Parameters::N_y_bottom_pml, Global_Parameters::N_y_top_pml, Global_Parameters::Width_x_left_pml, Global_Parameters::Width_x_right_pml, Global_Parameters::Width_y_bottom_pml, and Global_Parameters::Width_y_top_pml.

◆ create_pml_meshes() [2/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::create_pml_meshes ( )

Create PML meshes.

◆ doc_solution() [1/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::doc_solution ( DocInfo &  doc_info)

Doc the solution.

630 {
631 
632  ofstream some_file;
633  char filename[100];
634 
635  // Number of plot points
636  unsigned n_plot=5;
637 
638  // Output displacement field
639  //--------------------------
640  sprintf(filename,"%s/soln_bulk%i.dat",Doc_info.directory().c_str(),
641  Doc_info.number());
642  some_file.open(filename);
643  Solid_mesh_pt->output(some_file,n_plot);
644  some_file.close();
645 
646  sprintf(filename,"%s/soln_pml_right%i.dat",Doc_info.directory().c_str(),
647  Doc_info.number());
648  some_file.open(filename);
649  PML_right_mesh_pt->output(some_file,n_plot);
650  some_file.close();
651 
652  sprintf(filename,"%s/soln_pml_top%i.dat",Doc_info.directory().c_str(),
653  Doc_info.number());
654  some_file.open(filename);
655  PML_top_mesh_pt->output(some_file,n_plot);
656  some_file.close();
657 
658  sprintf(filename,"%s/soln_pml_left%i.dat",Doc_info.directory().c_str(),
659  Doc_info.number());
660  some_file.open(filename);
661  PML_left_mesh_pt->output(some_file,n_plot);
662  some_file.close();
663 
664  sprintf(filename,"%s/soln_pml_bottom%i.dat",Doc_info.directory().c_str(),
665  Doc_info.number());
666  some_file.open(filename);
667  PML_bottom_mesh_pt->output(some_file,n_plot);
668  some_file.close();
669 
670  sprintf(filename,"%s/soln_pml_top_right%i.dat",Doc_info.directory().c_str(),
671  Doc_info.number());
672  some_file.open(filename);
673  PML_top_right_mesh_pt->output(some_file,n_plot);
674  some_file.close();
675 
676  sprintf(filename,"%s/soln_pml_top_left%i.dat",Doc_info.directory().c_str(),
677  Doc_info.number());
678  some_file.open(filename);
679  PML_top_left_mesh_pt->output(some_file,n_plot);
680  some_file.close();
681 
682  sprintf(filename,"%s/soln_pml_bottom_right%i.dat",
683  Doc_info.directory().c_str(),
684  Doc_info.number());
685  some_file.open(filename);
686  PML_bottom_right_mesh_pt->output(some_file,n_plot);
687  some_file.close();
688 
689  sprintf(filename,"%s/soln_pml_bottom_left%i.dat",Doc_info.directory().c_str(),
690  Doc_info.number());
691  some_file.open(filename);
692  PML_bottom_left_mesh_pt->output(some_file,n_plot);
693  some_file.close();
694 
695  // Output exact solution
696  //----------------------
697  sprintf(filename,"%s/exact_soln%i.dat",Doc_info.directory().c_str(),
698  Doc_info.number());
699  some_file.open(filename);
701  some_file.close();
702 
703  // Doc error and return of the square of the L2 error
704  //---------------------------------------------------
705  double error,norm;
706  sprintf(filename,"%s/error_and_norm%i.dat",Doc_info.directory().c_str(),
707  Doc_info.number());
709  error,norm);
710  some_file.open(filename);
711  some_file << sqrt(error) << std::endl;
712  some_file << sqrt(norm) << std::endl;
713  some_file.close();
714 
715  // Doc L2 error and norm of solution
716  cout << "\nNorm of error : " << sqrt(error) << endl;
717  cout << "Norm of exact solution: " << sqrt(norm) << endl;
718 
719  // Output runtime (wall clock time) in s in a file
720  sprintf(filename,"%s/wall_clock_time%i.dat",Doc_info.directory().c_str(),
721  Doc_info.number());
722  some_file.open(filename);
723  some_file << Global_Parameters::T_end-Global_Parameters::T_start << std::endl;
724  some_file.close();
725 
726  // Output number of degrees of freedom in a file
727  sprintf(filename,"%s/ndof%i.dat",Doc_info.directory().c_str(),
728  Doc_info.number());
729  some_file.open(filename);
730  some_file << this->ndof() << std::endl;
731  some_file.close();
732 
733  // Output norm of solution (to allow validation of solution even
734  // if triangle generates a slightly different mesh)
735  sprintf(filename,"%s/elast_soln_norm%i.dat",Doc_info.directory().c_str(),
736  Doc_info.number());
737  some_file.open(filename);
738  double norm_soln=0.0;
739  this->mesh_pt()->compute_norm(norm_soln);
740  some_file << sqrt(norm_soln) << std::endl;
741  cout << "Norm of computed solution: " << sqrt(norm_soln) << endl;
742 
743  // Increment label for output files
744  Doc_info.number()++;
745 
746 } //end doc
AnnoyingScalar sqrt(const AnnoyingScalar &x)
Definition: AnnoyingScalar.h:134
std::string directory() const
Output directory.
Definition: oomph_utilities.h:524
unsigned & number()
Number used (e.g.) for labeling output files.
Definition: oomph_utilities.h:554
virtual void compute_norm(double &norm)
Definition: mesh.h:1068
void output_fct(std::ostream &outfile, const unsigned &n_plot, FiniteElement::SteadyExactSolutionFctPt)
Output a given Vector function at f(n_plot) points in each element.
Definition: mesh.cc:2199
virtual void compute_error(std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
Definition: mesh.h:1140
unsigned long ndof() const
Return the number of dofs.
Definition: problem.h:1674
double T_end
Definition: time_harmonic_elasticity_driver.cc:62
double T_start
helpers to time the code
Definition: time_harmonic_elasticity_driver.cc:61
string filename
Definition: MergeRestartFiles.py:39
int error
Definition: calibrate.py:297

References oomph::DocInfo::directory(), GlobalParameters::Doc_info, calibrate::error, Global_Parameters::exact_u(), MergeRestartFiles::filename, oomph::DocInfo::number(), sqrt(), Global_Parameters::T_end, and Global_Parameters::T_start.

◆ doc_solution() [2/2]

template<class ELASTICITY_ELEMENT >
void ElasticAnnulusProblem< ELASTICITY_ELEMENT >::doc_solution ( DocInfo &  doc_info)

Doc the solution.

Member Data Documentation

◆ Doc_info

template<class ELASTICITY_ELEMENT >
DocInfo ElasticAnnulusProblem< ELASTICITY_ELEMENT >::Doc_info
private

DocInfo object for output.

◆ Lower_inner_boundary_id

template<class ELASTICITY_ELEMENT >
unsigned ElasticAnnulusProblem< ELASTICITY_ELEMENT >::Lower_inner_boundary_id
private

Boundary ID of lower inner boundary.

◆ Lower_outer_boundary_id

template<class ELASTICITY_ELEMENT >
unsigned ElasticAnnulusProblem< ELASTICITY_ELEMENT >::Lower_outer_boundary_id
private

Boundary ID of lower outer boundary.

◆ PML_bottom_left_mesh_pt

template<class ELASTICITY_ELEMENT >
Mesh * ElasticAnnulusProblem< ELASTICITY_ELEMENT >::PML_bottom_left_mesh_pt
private

Pointer to the bottom left corner PML mesh.

◆ PML_bottom_mesh_pt

template<class ELASTICITY_ELEMENT >
Mesh * ElasticAnnulusProblem< ELASTICITY_ELEMENT >::PML_bottom_mesh_pt
private

Pointer to the bottom PML mesh.

◆ PML_bottom_right_mesh_pt

template<class ELASTICITY_ELEMENT >
Mesh * ElasticAnnulusProblem< ELASTICITY_ELEMENT >::PML_bottom_right_mesh_pt
private

Pointer to the bottom right corner PML mesh.

◆ PML_left_mesh_pt

template<class ELASTICITY_ELEMENT >
Mesh * ElasticAnnulusProblem< ELASTICITY_ELEMENT >::PML_left_mesh_pt
private

Pointer to the left PML mesh.

◆ PML_right_mesh_pt

template<class ELASTICITY_ELEMENT >
Mesh * ElasticAnnulusProblem< ELASTICITY_ELEMENT >::PML_right_mesh_pt
private

Pointer to the right PML mesh.

◆ PML_top_left_mesh_pt

template<class ELASTICITY_ELEMENT >
Mesh * ElasticAnnulusProblem< ELASTICITY_ELEMENT >::PML_top_left_mesh_pt
private

Pointer to the top left corner PML mesh.

◆ PML_top_mesh_pt

template<class ELASTICITY_ELEMENT >
Mesh * ElasticAnnulusProblem< ELASTICITY_ELEMENT >::PML_top_mesh_pt
private

Pointer to the top PML mesh.

◆ PML_top_right_mesh_pt

template<class ELASTICITY_ELEMENT >
Mesh * ElasticAnnulusProblem< ELASTICITY_ELEMENT >::PML_top_right_mesh_pt
private

Pointer to the top right corner PML mesh.

◆ Solid_mesh_pt [1/2]

template<class ELASTICITY_ELEMENT >
RefineableTriangleMesh<ELASTICITY_ELEMENT>* ElasticAnnulusProblem< ELASTICITY_ELEMENT >::Solid_mesh_pt
private

Pointer to refineable solid mesh.

◆ Solid_mesh_pt [2/2]

template<class ELASTICITY_ELEMENT >
RectangularQuadMesh<ELASTICITY_ELEMENT>* ElasticAnnulusProblem< ELASTICITY_ELEMENT >::Solid_mesh_pt
private

Pointer to solid mesh.

◆ Upper_inner_boundary_id

template<class ELASTICITY_ELEMENT >
unsigned ElasticAnnulusProblem< ELASTICITY_ELEMENT >::Upper_inner_boundary_id
private

Boundary ID of upper inner boundary.

◆ Upper_outer_boundary_id

template<class ELASTICITY_ELEMENT >
unsigned ElasticAnnulusProblem< ELASTICITY_ELEMENT >::Upper_outer_boundary_id
private

Boundary ID of upper outer boundary.


The documentation for this class was generated from the following files: