PolarNSProblem< ELEMENT > Class Template Reference

Driven cavity problem in rectangular domain. More...

+ Inheritance diagram for PolarNSProblem< ELEMENT >:

Public Member Functions

 PolarNSProblem ()
 Constructor. More...
 
 ~PolarNSProblem ()
 Destructor to clean up memory. More...
 
void fix_pressure (const unsigned int &e, const unsigned int &pdof, const double &pvalue)
 Fix pressure in element e at pressure dof pdof and set to pvalue. More...
 
void actions_after_solve ()
 Update the after solve (empty) More...
 
void actions_before_solve ()
 
void actions_before_adapt ()
 Before adaptation: More...
 
void actions_after_adapt ()
 After adaptation: Unpin all pressures and then pin redudant pressure dofs. More...
 
void pin_boundaries ()
 Pin boundaries. More...
 
void setup_external_pressure ()
 Set up external pressure and pass to traction elements. More...
 
void assign_external_pressure ()
 Set up external pressure and pass to traction elements. More...
 
jh_mesh< ELEMENT > * mesh_pt ()
 
void actions_before_newton_convergence_check ()
 
void element_output (std::ostream &outfile, unsigned e, const unsigned &nplot)
 Output an individual element. More...
 
double get_pext ()
 
void set_pext (double p)
 
void get_shear_stress (Vector< double > &shear_stress)
 
void pin_boundaries_to_zero ()
 
void output_streamfunction (DocInfo &doc_info, bool eigen)
 
void get_symmetry (DoubleVector &symmetry, double pressure_norm)
 
int get_Jacobian_sign ()
 
void doc_solution (DocInfo &doc_info)
 Doc the solution. More...
 
void header (ofstream &some_file)
 
- Public Member Functions inherited from oomph::Problem
virtual void debug_hook_fct (const unsigned &i)
 
void set_analytic_dparameter (double *const &parameter_pt)
 
void unset_analytic_dparameter (double *const &parameter_pt)
 
bool is_dparameter_calculated_analytically (double *const &parameter_pt)
 
void set_analytic_hessian_products ()
 
void unset_analytic_hessian_products ()
 
bool are_hessian_products_calculated_analytically ()
 
void set_pinned_values_to_zero ()
 
bool distributed () const
 
OomphCommunicatorcommunicator_pt ()
 access function to the oomph-lib communicator More...
 
const OomphCommunicatorcommunicator_pt () const
 access function to the oomph-lib communicator, const version More...
 
 Problem ()
 
 Problem (const Problem &dummy)=delete
 Broken copy constructor. More...
 
void operator= (const Problem &)=delete
 Broken assignment operator. More...
 
virtual ~Problem ()
 Virtual destructor to clean up memory. More...
 
Mesh *& mesh_pt ()
 Return a pointer to the global mesh. More...
 
Mesh *const & mesh_pt () const
 Return a pointer to the global mesh (const version) More...
 
Mesh *& mesh_pt (const unsigned &imesh)
 
Mesh *const & mesh_pt (const unsigned &imesh) const
 Return a pointer to the i-th submesh (const version) More...
 
unsigned nsub_mesh () const
 Return number of submeshes. More...
 
unsigned add_sub_mesh (Mesh *const &mesh_pt)
 
void flush_sub_meshes ()
 
void build_global_mesh ()
 
void rebuild_global_mesh ()
 
LinearSolver *& linear_solver_pt ()
 Return a pointer to the linear solver object. More...
 
LinearSolver *const & linear_solver_pt () const
 Return a pointer to the linear solver object (const version) More...
 
LinearSolver *& mass_matrix_solver_for_explicit_timestepper_pt ()
 
LinearSolvermass_matrix_solver_for_explicit_timestepper_pt () const
 
EigenSolver *& eigen_solver_pt ()
 Return a pointer to the eigen solver object. More...
 
EigenSolver *const & eigen_solver_pt () const
 Return a pointer to the eigen solver object (const version) More...
 
Time *& time_pt ()
 Return a pointer to the global time object. More...
 
Timetime_pt () const
 Return a pointer to the global time object (const version). More...
 
doubletime ()
 Return the current value of continuous time. More...
 
double time () const
 Return the current value of continuous time (const version) More...
 
TimeStepper *& time_stepper_pt ()
 
const TimeSteppertime_stepper_pt () const
 
TimeStepper *& time_stepper_pt (const unsigned &i)
 Return a pointer to the i-th timestepper. More...
 
ExplicitTimeStepper *& explicit_time_stepper_pt ()
 Return a pointer to the explicit timestepper. More...
 
unsigned long set_timestepper_for_all_data (TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data=false)
 
virtual void shift_time_values ()
 Shift all values along to prepare for next timestep. More...
 
AssemblyHandler *& assembly_handler_pt ()
 Return a pointer to the assembly handler object. More...
 
AssemblyHandler *const & assembly_handler_pt () const
 Return a pointer to the assembly handler object (const version) More...
 
doubleminimum_dt ()
 Access function to min timestep in adaptive timestepping. More...
 
doublemaximum_dt ()
 Access function to max timestep in adaptive timestepping. More...
 
unsignedmax_newton_iterations ()
 Access function to max Newton iterations before giving up. More...
 
void problem_is_nonlinear (const bool &prob_lin)
 Access function to Problem_is_nonlinear. More...
 
doublemax_residuals ()
 
booltime_adaptive_newton_crash_on_solve_fail ()
 Access function for Time_adaptive_newton_crash_on_solve_fail. More...
 
doublenewton_solver_tolerance ()
 
void add_time_stepper_pt (TimeStepper *const &time_stepper_pt)
 
void set_explicit_time_stepper_pt (ExplicitTimeStepper *const &explicit_time_stepper_pt)
 
void initialise_dt (const double &dt)
 
void initialise_dt (const Vector< double > &dt)
 
Data *& global_data_pt (const unsigned &i)
 Return a pointer to the the i-th global data object. More...
 
void add_global_data (Data *const &global_data_pt)
 
void flush_global_data ()
 
LinearAlgebraDistribution *const & dof_distribution_pt () const
 Return the pointer to the dof distribution (read-only) More...
 
unsigned long ndof () const
 Return the number of dofs. More...
 
unsigned ntime_stepper () const
 Return the number of time steppers. More...
 
unsigned nglobal_data () const
 Return the number of global data values. More...
 
unsigned self_test ()
 Self-test: Check meshes and global data. Return 0 for OK. More...
 
void enable_store_local_dof_pt_in_elements ()
 
void disable_store_local_dof_pt_in_elements ()
 
unsigned long assign_eqn_numbers (const bool &assign_local_eqn_numbers=true)
 
void describe_dofs (std::ostream &out= *(oomph_info.stream_pt())) const
 
void enable_discontinuous_formulation ()
 
void disable_discontinuous_formulation ()
 
void get_dofs (DoubleVector &dofs) const
 
void get_dofs (const unsigned &t, DoubleVector &dofs) const
 Return vector of the t'th history value of all dofs. More...
 
void set_dofs (const DoubleVector &dofs)
 Set the values of the dofs. More...
 
void set_dofs (const unsigned &t, DoubleVector &dofs)
 Set the history values of the dofs. More...
 
void set_dofs (const unsigned &t, Vector< double * > &dof_pt)
 
void add_to_dofs (const double &lambda, const DoubleVector &increment_dofs)
 Add lambda x incremenet_dofs[l] to the l-th dof. More...
 
doubleglobal_dof_pt (const unsigned &i)
 
doubledof (const unsigned &i)
 i-th dof in the problem More...
 
double dof (const unsigned &i) const
 i-th dof in the problem (const version) More...
 
double *& dof_pt (const unsigned &i)
 Pointer to i-th dof in the problem. More...
 
doubledof_pt (const unsigned &i) const
 Pointer to i-th dof in the problem (const version) More...
 
virtual void get_inverse_mass_matrix_times_residuals (DoubleVector &Mres)
 
virtual void get_dvaluesdt (DoubleVector &f)
 
virtual void get_residuals (DoubleVector &residuals)
 Get the total residuals Vector for the problem. More...
 
virtual void get_jacobian (DoubleVector &residuals, DenseDoubleMatrix &jacobian)
 
virtual void get_jacobian (DoubleVector &residuals, CRDoubleMatrix &jacobian)
 
virtual void get_jacobian (DoubleVector &residuals, CCDoubleMatrix &jacobian)
 
virtual void get_jacobian (DoubleVector &residuals, SumOfMatrices &jacobian)
 
void get_fd_jacobian (DoubleVector &residuals, DenseMatrix< double > &jacobian)
 Get the full Jacobian by finite differencing. More...
 
void get_derivative_wrt_global_parameter (double *const &parameter_pt, DoubleVector &result)
 
void get_hessian_vector_products (DoubleVectorWithHaloEntries const &Y, Vector< DoubleVectorWithHaloEntries > const &C, Vector< DoubleVectorWithHaloEntries > &product)
 
void solve_eigenproblem (const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, Vector< DoubleVector > &eigenvector, const bool &steady=true)
 Solve the eigenproblem. More...
 
void solve_eigenproblem (const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, const bool &steady=true)
 
virtual void get_eigenproblem_matrices (CRDoubleMatrix &mass_matrix, CRDoubleMatrix &main_matrix, const double &shift=0.0)
 
void assign_eigenvector_to_dofs (DoubleVector &eigenvector)
 Assign the eigenvector passed to the function to the dofs. More...
 
void add_eigenvector_to_dofs (const double &epsilon, const DoubleVector &eigenvector)
 
void store_current_dof_values ()
 Store the current values of the degrees of freedom. More...
 
void restore_dof_values ()
 Restore the stored values of the degrees of freedom. More...
 
void enable_jacobian_reuse ()
 
void disable_jacobian_reuse ()
 Disable recycling of Jacobian in Newton iteration. More...
 
bool jacobian_reuse_is_enabled ()
 Is recycling of Jacobian in Newton iteration enabled? More...
 
booluse_predictor_values_as_initial_guess ()
 
void newton_solve ()
 Use Newton method to solve the problem. More...
 
void enable_globally_convergent_newton_method ()
 enable globally convergent Newton method More...
 
void disable_globally_convergent_newton_method ()
 disable globally convergent Newton method More...
 
void newton_solve (unsigned const &max_adapt)
 
void steady_newton_solve (unsigned const &max_adapt=0)
 
void copy (Problem *orig_problem_pt)
 
virtual Problemmake_copy ()
 
virtual void read (std::ifstream &restart_file, bool &unsteady_restart)
 
virtual void read (std::ifstream &restart_file)
 
virtual void dump (std::ofstream &dump_file) const
 
void dump (const std::string &dump_file_name) const
 
void delete_all_external_storage ()
 
virtual void symmetrise_eigenfunction_for_adaptive_pitchfork_tracking ()
 
doublebifurcation_parameter_pt () const
 
void get_bifurcation_eigenfunction (Vector< DoubleVector > &eigenfunction)
 
void activate_fold_tracking (double *const &parameter_pt, const bool &block_solve=true)
 
void activate_bifurcation_tracking (double *const &parameter_pt, const DoubleVector &eigenvector, const bool &block_solve=true)
 
void activate_bifurcation_tracking (double *const &parameter_pt, const DoubleVector &eigenvector, const DoubleVector &normalisation, const bool &block_solve=true)
 
void activate_pitchfork_tracking (double *const &parameter_pt, const DoubleVector &symmetry_vector, const bool &block_solve=true)
 
void activate_hopf_tracking (double *const &parameter_pt, const bool &block_solve=true)
 
void activate_hopf_tracking (double *const &parameter_pt, const double &omega, const DoubleVector &null_real, const DoubleVector &null_imag, const bool &block_solve=true)
 
void deactivate_bifurcation_tracking ()
 
void reset_assembly_handler_to_default ()
 Reset the system to the standard non-augemented state. More...
 
double arc_length_step_solve (double *const &parameter_pt, const double &ds, const unsigned &max_adapt=0)
 
double arc_length_step_solve (Data *const &data_pt, const unsigned &data_index, const double &ds, const unsigned &max_adapt=0)
 
void reset_arc_length_parameters ()
 
intsign_of_jacobian ()
 
void explicit_timestep (const double &dt, const bool &shift_values=true)
 Take an explicit timestep of size dt. More...
 
void unsteady_newton_solve (const double &dt)
 
void unsteady_newton_solve (const double &dt, const bool &shift_values)
 
void unsteady_newton_solve (const double &dt, const unsigned &max_adapt, const bool &first, const bool &shift=true)
 
double doubly_adaptive_unsteady_newton_solve (const double &dt, const double &epsilon, const unsigned &max_adapt, const bool &first, const bool &shift=true)
 
double doubly_adaptive_unsteady_newton_solve (const double &dt, const double &epsilon, const unsigned &max_adapt, const unsigned &suppress_resolve_after_spatial_adapt_flag, const bool &first, const bool &shift=true)
 
double adaptive_unsteady_newton_solve (const double &dt_desired, const double &epsilon)
 
double adaptive_unsteady_newton_solve (const double &dt_desired, const double &epsilon, const bool &shift_values)
 
void assign_initial_values_impulsive ()
 
void assign_initial_values_impulsive (const double &dt)
 
void calculate_predictions ()
 Calculate predictions. More...
 
void enable_mass_matrix_reuse ()
 
void disable_mass_matrix_reuse ()
 
bool mass_matrix_reuse_is_enabled ()
 Return whether the mass matrix is being reused. More...
 
void refine_uniformly (const Vector< unsigned > &nrefine_for_mesh)
 
void refine_uniformly (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)
 
void refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh)
 
void refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)
 
void refine_uniformly (DocInfo &doc_info)
 
void refine_uniformly_and_prune (DocInfo &doc_info)
 
void refine_uniformly ()
 
void refine_uniformly (const unsigned &i_mesh, DocInfo &doc_info)
 Do uniform refinement for submesh i_mesh with documentation. More...
 
void refine_uniformly (const unsigned &i_mesh)
 Do uniform refinement for submesh i_mesh without documentation. More...
 
void p_refine_uniformly (const Vector< unsigned > &nrefine_for_mesh)
 
void p_refine_uniformly (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)
 
void p_refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh)
 
void p_refine_uniformly_and_prune (const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info)
 
void p_refine_uniformly (DocInfo &doc_info)
 
void p_refine_uniformly_and_prune (DocInfo &doc_info)
 
void p_refine_uniformly ()
 
void p_refine_uniformly (const unsigned &i_mesh, DocInfo &doc_info)
 Do uniform p-refinement for submesh i_mesh with documentation. More...
 
void p_refine_uniformly (const unsigned &i_mesh)
 Do uniform p-refinement for submesh i_mesh without documentation. More...
 
void refine_selected_elements (const Vector< unsigned > &elements_to_be_refined)
 
void refine_selected_elements (const Vector< RefineableElement * > &elements_to_be_refined_pt)
 
void refine_selected_elements (const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined)
 
void refine_selected_elements (const unsigned &i_mesh, const Vector< RefineableElement * > &elements_to_be_refined_pt)
 
void refine_selected_elements (const Vector< Vector< unsigned >> &elements_to_be_refined)
 
void refine_selected_elements (const Vector< Vector< RefineableElement * >> &elements_to_be_refined_pt)
 
void p_refine_selected_elements (const Vector< unsigned > &elements_to_be_refined)
 
void p_refine_selected_elements (const Vector< PRefineableElement * > &elements_to_be_refined_pt)
 
void p_refine_selected_elements (const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined)
 
void p_refine_selected_elements (const unsigned &i_mesh, const Vector< PRefineableElement * > &elements_to_be_refined_pt)
 
void p_refine_selected_elements (const Vector< Vector< unsigned >> &elements_to_be_refined)
 
void p_refine_selected_elements (const Vector< Vector< PRefineableElement * >> &elements_to_be_refined_pt)
 
unsigned unrefine_uniformly ()
 
unsigned unrefine_uniformly (const unsigned &i_mesh)
 
void p_unrefine_uniformly (DocInfo &doc_info)
 
void p_unrefine_uniformly (const unsigned &i_mesh, DocInfo &doc_info)
 Do uniform p-unrefinement for submesh i_mesh without documentation. More...
 
void adapt (unsigned &n_refined, unsigned &n_unrefined)
 
void adapt ()
 
void p_adapt (unsigned &n_refined, unsigned &n_unrefined)
 
void p_adapt ()
 
void adapt_based_on_error_estimates (unsigned &n_refined, unsigned &n_unrefined, Vector< Vector< double >> &elemental_error)
 
void adapt_based_on_error_estimates (Vector< Vector< double >> &elemental_error)
 
void get_all_error_estimates (Vector< Vector< double >> &elemental_error)
 
void doc_errors (DocInfo &doc_info)
 Get max and min error for all elements in submeshes. More...
 
void doc_errors ()
 Get max and min error for all elements in submeshes. More...
 
void enable_info_in_newton_solve ()
 
void disable_info_in_newton_solve ()
 Disable the output of information when in the newton solver. More...
 
- Public Member Functions inherited from oomph::ExplicitTimeSteppableObject
 ExplicitTimeSteppableObject ()
 Empty constructor. More...
 
 ExplicitTimeSteppableObject (const ExplicitTimeSteppableObject &)=delete
 Broken copy constructor. More...
 
void operator= (const ExplicitTimeSteppableObject &)=delete
 Broken assignment operator. More...
 
virtual ~ExplicitTimeSteppableObject ()
 Empty destructor. More...
 
virtual void actions_before_explicit_stage ()
 
virtual void actions_after_explicit_stage ()
 

Private Attributes

DataExternal_pressure_data_pt
 Data object whose single value stores the external pressure. More...
 

Additional Inherited Members

- Public Types inherited from oomph::Problem
typedef void(* SpatialErrorEstimatorFctPt) (Mesh *&mesh_pt, Vector< double > &elemental_error)
 Function pointer for spatial error estimator. More...
 
typedef void(* SpatialErrorEstimatorWithDocFctPt) (Mesh *&mesh_pt, Vector< double > &elemental_error, DocInfo &doc_info)
 Function pointer for spatial error estimator with doc. More...
 
- Public Attributes inherited from oomph::Problem
bool Shut_up_in_newton_solve
 
- Static Public Attributes inherited from oomph::Problem
static bool Suppress_warning_about_actions_before_read_unstructured_meshes
 
- Protected Types inherited from oomph::Problem
enum  Assembly_method {
  Perform_assembly_using_vectors_of_pairs , Perform_assembly_using_two_vectors , Perform_assembly_using_maps , Perform_assembly_using_lists ,
  Perform_assembly_using_two_arrays
}
 Enumerated flags to determine which sparse assembly method is used. More...
 
- Protected Member Functions inherited from oomph::Problem
unsigned setup_element_count_per_dof ()
 
virtual void sparse_assemble_row_or_column_compressed (Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag)
 
virtual void actions_before_newton_solve ()
 
virtual void actions_after_newton_solve ()
 
virtual void actions_before_newton_step ()
 
virtual void actions_after_newton_step ()
 
virtual void actions_before_implicit_timestep ()
 
virtual void actions_after_implicit_timestep ()
 
virtual void actions_after_implicit_timestep_and_error_estimation ()
 
virtual void actions_before_explicit_timestep ()
 Actions that should be performed before each explicit time step. More...
 
virtual void actions_after_explicit_timestep ()
 Actions that should be performed after each explicit time step. More...
 
virtual void actions_before_read_unstructured_meshes ()
 
virtual void actions_after_read_unstructured_meshes ()
 
virtual void actions_after_change_in_global_parameter (double *const &parameter_pt)
 
virtual void actions_after_change_in_bifurcation_parameter ()
 
virtual void actions_after_parameter_increase (double *const &parameter_pt)
 
doubledof_derivative (const unsigned &i)
 
doubledof_current (const unsigned &i)
 
virtual void set_initial_condition ()
 
virtual double global_temporal_error_norm ()
 
unsigned newton_solve_continuation (double *const &parameter_pt)
 
unsigned newton_solve_continuation (double *const &parameter_pt, DoubleVector &z)
 
void calculate_continuation_derivatives (double *const &parameter_pt)
 
void calculate_continuation_derivatives (const DoubleVector &z)
 
void calculate_continuation_derivatives_fd (double *const &parameter_pt)
 
bool does_pointer_correspond_to_problem_data (double *const &parameter_pt)
 
void set_consistent_pinned_values_for_continuation ()
 
- Protected Attributes inherited from oomph::Problem
Vector< Problem * > Copy_of_problem_pt
 
std::map< double *, boolCalculate_dparameter_analytic
 
bool Calculate_hessian_products_analytic
 
LinearAlgebraDistributionDof_distribution_pt
 
Vector< double * > Dof_pt
 Vector of pointers to dofs. More...
 
DoubleVectorWithHaloEntries Element_count_per_dof
 
double Relaxation_factor
 
double Newton_solver_tolerance
 
unsigned Max_newton_iterations
 Maximum number of Newton iterations. More...
 
unsigned Nnewton_iter_taken
 
Vector< doubleMax_res
 Maximum residuals at start and after each newton iteration. More...
 
double Max_residuals
 
bool Time_adaptive_newton_crash_on_solve_fail
 
bool Jacobian_reuse_is_enabled
 Is re-use of Jacobian in Newton iteration enabled? Default: false. More...
 
bool Jacobian_has_been_computed
 
bool Problem_is_nonlinear
 
bool Pause_at_end_of_sparse_assembly
 
bool Doc_time_in_distribute
 
unsigned Sparse_assembly_method
 
unsigned Sparse_assemble_with_arrays_initial_allocation
 
unsigned Sparse_assemble_with_arrays_allocation_increment
 
Vector< Vector< unsigned > > Sparse_assemble_with_arrays_previous_allocation
 
double Numerical_zero_for_sparse_assembly
 
double FD_step_used_in_get_hessian_vector_products
 
bool Mass_matrix_reuse_is_enabled
 
bool Mass_matrix_has_been_computed
 
bool Discontinuous_element_formulation
 
double Minimum_dt
 Minimum desired dt: if dt falls below this value, exit. More...
 
double Maximum_dt
 Maximum desired dt. More...
 
double DTSF_max_increase
 
double DTSF_min_decrease
 
double Minimum_dt_but_still_proceed
 
bool Scale_arc_length
 Boolean to control whether arc-length should be scaled. More...
 
double Desired_proportion_of_arc_length
 Proportion of the arc-length to taken by the parameter. More...
 
double Theta_squared
 
int Sign_of_jacobian
 Storage for the sign of the global Jacobian. More...
 
double Continuation_direction
 
double Parameter_derivative
 Storage for the derivative of the global parameter wrt arc-length. More...
 
double Parameter_current
 Storage for the present value of the global parameter. More...
 
bool Use_continuation_timestepper
 Boolean to control original or new storage of dof stuff. More...
 
unsigned Dof_derivative_offset
 
unsigned Dof_current_offset
 
Vector< doubleDof_derivative
 Storage for the derivative of the problem variables wrt arc-length. More...
 
Vector< doubleDof_current
 Storage for the present values of the variables. More...
 
double Ds_current
 Storage for the current step value. More...
 
unsigned Desired_newton_iterations_ds
 
double Minimum_ds
 Minimum desired value of arc-length. More...
 
bool Bifurcation_detection
 Boolean to control bifurcation detection via determinant of Jacobian. More...
 
bool Bisect_to_find_bifurcation
 Boolean to control wheter bisection is used to located bifurcation. More...
 
bool First_jacobian_sign_change
 Boolean to indicate whether a sign change has occured in the Jacobian. More...
 
bool Arc_length_step_taken
 Boolean to indicate whether an arc-length step has been taken. More...
 
bool Use_finite_differences_for_continuation_derivatives
 
OomphCommunicatorCommunicator_pt
 The communicator for this problem. More...
 
bool Always_take_one_newton_step
 
double Timestep_reduction_factor_after_nonconvergence
 
bool Keep_temporal_error_below_tolerance
 
- Static Protected Attributes inherited from oomph::Problem
static ContinuationStorageScheme Continuation_time_stepper
 Storage for the single static continuation timestorage object. More...
 

Detailed Description

template<class ELEMENT>
class PolarNSProblem< ELEMENT >

Driven cavity problem in rectangular domain.

///////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////// Further includes: ///////////////////////////////////////////////////////////////////// /////////////////////////////////////////////////////////////////////

Constructor & Destructor Documentation

◆ PolarNSProblem()

template<class ELEMENT >
PolarNSProblem< ELEMENT >::PolarNSProblem

Constructor.

Constructor for PolarNS problem.

648 {
649  // Increace max residuals slightly
650  Max_residuals=20000;
652 
653  // Setup mesh
654 
655  // # of elements in x-direction
657 
658  // # of elements in y-direction
660 
661  // Build and assign mesh
662  Problem::mesh_pt() = new jh_mesh<ELEMENT>(Nx,Ny);
663 
664  // Set error estimator
666  //dynamic_cast<Refineable_r_mesh<ELEMENT>*>(mesh_pt())->
667  //spatial_error_estimator_pt()=error_estimator_pt;
668  mesh_pt()->spatial_error_estimator_pt()=error_estimator_pt;
669 
670  //pin the necessary boundaries
671  pin_boundaries();
672 
673  // Complete the build of all elements so they are fully functional
674 
675  //Find number of fluid elements in mesh
676  unsigned n_fluid = mesh_pt()->fluid_elt_length();
677 
678  // Loop over the elements to set up element-specific
679  // things that cannot be handled by constructor
680  for(unsigned e=0;e<n_fluid;e++)
681  {
682  // Upcast from GeneralisedElement to the present element
683  ELEMENT* el_pt = dynamic_cast<ELEMENT*>(mesh_pt()->element_pt(e));
684 
685  //Set the Reynolds number
686  el_pt->re_pt() = &Global_Physical_Variables::Re;
687  //Set alpha
688  el_pt->alpha_pt() = &Global_Physical_Variables::Alpha;
689  //Set the re_st pointer
690  el_pt->re_st_pt() = &Global_Physical_Variables::Re;
691 
692  } // end loop over elements
693 
694  // Pin redudant pressure dofs
695  RefineablePolarNavierStokesEquations::
696  pin_redundant_nodal_pressures(mesh_pt()->fluid_elt_vector());
697 
698  //Determine whether we have traction elements at both ends
700 
701  // Now set the first pressure value in element 0 to 0.0
702  // But only if all B.C.s are Dirichlet
704 
705  // Setup equation numbering scheme
706  cout << "Number of equations: " << assign_eqn_numbers() << endl;
707 
708 } // end_of_constructor
Array< double, 1, 3 > e(1./3., 0.5, 2.)
jh_mesh< ELEMENT > * mesh_pt()
Definition: jeffery_hamel.cc:371
void setup_external_pressure()
Set up external pressure and pass to traction elements.
Definition: jeffery_hamel.cc:332
void pin_boundaries()
Pin boundaries.
Definition: jeffery_hamel.cc:276
void fix_pressure(const unsigned int &e, const unsigned int &pdof, const double &pvalue)
Fix pressure in element e at pressure dof pdof and set to pvalue.
Definition: jeffery_hamel.cc:147
unsigned Max_newton_iterations
Maximum number of Newton iterations.
Definition: problem.h:599
double Max_residuals
Definition: problem.h:610
unsigned long assign_eqn_numbers(const bool &assign_local_eqn_numbers=true)
Definition: problem.cc:1989
Definition: error_estimator.h:266
My fluid mesh (with traction elements)
Definition: jh_includes.h:117
unsigned Nx
Number of elements in each direction (used by SimpleCubicMesh)
Definition: structured_cubic_point_source.cc:114
unsigned Ny
Definition: structured_cubic_point_source.cc:115
int ymesh
Definition: jeffery_hamel.cc:62
bool outlet_traction
Definition: jeffery_hamel.cc:82
int xmesh
Definition: jeffery_hamel.cc:61
double Alpha
Scaling factor for wall thickness (to be used in an exercise)
Definition: unsteady_ring.cc:73
bool inlet_traction
Definition: jeffery_hamel.cc:79
double Re
Reynolds number.
Definition: fibre.cc:55
Z2ErrorEstimator * error_estimator_pt
Definition: MortaringCantileverCompareToNonMortaring.cpp:190

References Global_Physical_Variables::Alpha, e(), MeshRefinement::error_estimator_pt, Global_Physical_Variables::inlet_traction, oomph::Locate_zeta_helpers::Max_newton_iterations, GlobalParameters::Nx, GlobalParameters::Ny, Global_Physical_Variables::outlet_traction, Global_Physical_Variables::Re, Global_Physical_Variables::xmesh, and Global_Physical_Variables::ymesh.

◆ ~PolarNSProblem()

template<class ELEMENT >
PolarNSProblem< ELEMENT >::~PolarNSProblem

Destructor to clean up memory.

Destructor for PolarNS problem.

716 {
717 
718  // Mesh gets killed in general problem destructor
719 
720 } // end_of_destructor

Member Function Documentation

◆ actions_after_adapt()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::actions_after_adapt ( )
inlinevirtual

After adaptation: Unpin all pressures and then pin redudant pressure dofs.

Reimplemented from oomph::Problem.

246  {
247  //Reassign fluid elements to storage
248  mesh_pt()->assign_fluid_element_vector();
249 
250  //Reattach surface elements
251  if(Global_Physical_Variables::inlet_traction) mesh_pt()->make_traction_elements(false);
252  if(Global_Physical_Variables::outlet_traction) mesh_pt()->make_traction_elements(true);
254 
255  //Reattach shear elements
256  mesh_pt()->make_shear_elements();
257 
258  // Unpin all pressure dofs
259  RefineablePolarNavierStokesEquations::
260  unpin_all_pressure_dofs(mesh_pt()->fluid_elt_vector());
261 
262  // Pin redundant pressure dofs
263  RefineablePolarNavierStokesEquations::
264  pin_redundant_nodal_pressures(mesh_pt()->fluid_elt_vector());
265 
266  //Determine whether we have traction elements at both ends
268 
269  // Now set the first pressure value in element 0 to 0.0
270  // But only if all B.C.s are Dirichlet
272 
273  } // end_of_actions_after_adapt
void assign_external_pressure()
Set up external pressure and pass to traction elements.
Definition: jeffery_hamel.cc:347

References Global_Physical_Variables::inlet_traction, and Global_Physical_Variables::outlet_traction.

◆ actions_after_solve()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::actions_after_solve ( )
inline

Update the after solve (empty)

157 {}

◆ actions_before_adapt()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::actions_before_adapt ( )
inlinevirtual

Before adaptation:

Reimplemented from oomph::Problem.

229  {
230  //Strip off all surface elements
231  mesh_pt()->remove_traction_elements();
232  mesh_pt()->remove_shear_elements();
233 
234  //Reset the external pressure data pointer if there is one
235  //using namespace Global_Physical_Variables;
236  //if(inlet_traction && outlet_traction)
237  //{delete External_pressure_data_pt;External_pressure_data_pt=0;}
238 
239  //Remove global data from problem
241 
242  }
void flush_global_data()
Definition: problem.h:1662

◆ actions_before_newton_convergence_check()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::actions_before_newton_convergence_check ( )
inlinevirtual

Any actions that are to be performed before the residual is checked in the Newton method, e.g. update any boundary conditions that depend upon variables of the problem; update any ‘dependent’ variables; or perform an update of the nodal positions in SpineMeshes etc. CAREFUL: This step should (and if the FD-based LinearSolver FD_LU is used, must) only update values that are pinned!

Reimplemented from oomph::Problem.

380  {
382  }// End of actions_before_newton_convergence_check
void actions_before_solve()
Definition: jeffery_hamel.cc:161

◆ actions_before_solve()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::actions_before_solve ( )
inline

Update the problem specs before solve. Re-set velocity boundary conditions just to be on the safe side...

162  {
163  unsigned long start=1,end=4;
166 
168 
169  for(unsigned long ibound=start;ibound<end;ibound+=2)
170  {
171  unsigned num_nod= mesh_pt()->nboundary_node(ibound);
172  for (unsigned inod=0;inod<num_nod;inod++)
173  {
174  //Get r
175  double r = mesh_pt()->boundary_node_pt(ibound,inod)->x(0);
176  double phi = mesh_pt()->boundary_node_pt(ibound,inod)->x(1);
177 
178  //Use exact stokes solution if necessary
179  double exact_u;
181  {
182  double m=2.*A;
183  double mu=(1./(sin(m)-m*cos(m)));
184  exact_u=(mu/r)*(cos(m*phi)-cos(m));
185  }
186  else{exact_u=0.75*(1.-pow(phi,2.))/(A*r);}
187 
188  mesh_pt()->boundary_node_pt(ibound,inod)->set_value(0,exact_u);
189  mesh_pt()->boundary_node_pt(ibound,inod)->set_value(1,0.0);
190  }
191  }//End of dirichlet inlet/outlet in u
192 
194  {
195  //If we haven't just pinned v at the inlet (end=2)
196  //then pin it here
197  if(end==2)
198  {
199  //Pin v at inlet
200  unsigned long ibound=3;
201  unsigned num_nod= mesh_pt()->nboundary_node(ibound);
202  for (unsigned inod=0;inod<num_nod;inod++)
203  {
204  // No flow in azimuthal direction:
205  mesh_pt()->boundary_node_pt(ibound,inod)->set_value(1,0.0);
206  }
207  }
208  }//End of pinv
209 
210  // Loop over remaining boundaries (side walls)
211  unsigned num_bound = mesh_pt()->nboundary();
212 
213  // No penetration and no slip condition on remaining boundaries
214  for(unsigned long ibound=0;ibound<num_bound;ibound=ibound+2)
215  {
216  unsigned num_nod= mesh_pt()->nboundary_node(ibound);
217  for (unsigned inod=0;inod<num_nod;inod++)
218  {
219  mesh_pt()->boundary_node_pt(ibound,inod)->set_value(0,0.);
220  //No flow in theta direction
221  mesh_pt()->boundary_node_pt(ibound,inod)->set_value(1,0.);
222  }
223  }//End of setting side walls to zero
224 
225  } // end_of_actions_before_solve
AnnoyingScalar cos(const AnnoyingScalar &x)
Definition: AnnoyingScalar.h:136
AnnoyingScalar sin(const AnnoyingScalar &x)
Definition: AnnoyingScalar.h:137
Matrix< SCALARA, Dynamic, Dynamic, opt_A > A
Definition: bench_gemm.cpp:47
The matrix class, also used for vectors and row-vectors.
Definition: Eigen/Eigen/src/Core/Matrix.h:186
static constexpr lastp1_t end
Definition: IndexedViewHelper.h:79
int * m
Definition: level2_cplx_impl.h:294
EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC bfloat16 pow(const bfloat16 &a, const bfloat16 &b)
Definition: BFloat16.h:625
std::complex< double > mu
Definition: time_harmonic_fourier_decomposed_linear_elasticity/cylinder/cylinder.cc:52
bool pinv
Definition: jeffery_hamel.cc:86
bool stokes
Definition: jeffery_hamel.cc:89
double exact_u(const double &time, const Vector< double > &x)
Exact solution.
Definition: two_d_linear_wave.cc:58
r
Definition: UniformPSDSelfTest.py:20
void start(const unsigned &i)
(Re-)start i-th timer
Definition: oomph_utilities.cc:243

References Global_Physical_Variables::Alpha, cos(), Eigen::placeholders::end, TanhSolnForLinearWave::exact_u(), Global_Physical_Variables::inlet_traction, m, Global_Parameters::mu, Global_Physical_Variables::outlet_traction, Global_Physical_Variables::pinv, Eigen::bfloat16_impl::pow(), UniformPSDSelfTest::r, sin(), oomph::CumulativeTimings::start(), and Global_Physical_Variables::stokes.

◆ assign_external_pressure()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::assign_external_pressure ( )
inline

Set up external pressure and pass to traction elements.

348  {
349  // Regard the external pressure as an unknown and add
350  // it to the problem's global data.
352 
353  //Can pin our external pressure if needed
354  //External_pressure_data_pt->pin(0);
355 
356  //pass flux element the external pressure data
357  FluxConstraint* flux_el_pt = this->mesh_pt()->flux_constraint_elt_pt();
358 
360 
361  //Need to pass pointer to external pressure to inlet traction elements
362  unsigned n_inlet = mesh_pt()->inlet_traction_elt_length();
363  for(unsigned e=0;e<n_inlet;e++)
364  {
365  this->mesh_pt()->inlet_traction_elt_pt(e)->set_external_pressure_data(External_pressure_data_pt);
366  }
367 
368  } // end of assign_external_pressure
Data * External_pressure_data_pt
Data object whose single value stores the external pressure.
Definition: jeffery_hamel.cc:136
Generalised element used to specify the mass flux (=1)
Definition: jh_includes.h:36
void set_pressure_data(Data *pext_pt)
Function for setting up external pressure.
Definition: jh_includes.h:60
void add_global_data(Data *const &global_data_pt)
Definition: problem.h:1654

References e(), and oomph::FluxConstraint::set_pressure_data().

◆ doc_solution()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::doc_solution ( DocInfo doc_info)

Doc the solution.

727 {
728  ofstream some_file;
729  char filename[100];
730 
731  // Number of plot points
732  unsigned npts;
733  npts=3;
734 
735  // Output solution
736  sprintf(filename,"%s/soln%i.dat",doc_info.directory().c_str(),
737  doc_info.number());
738  some_file.open(filename);
739  header( some_file );
740  unsigned n_fluid = mesh_pt()->fluid_elt_length();
741  for(unsigned e=0;e<n_fluid;e++)
742  {
743  ELEMENT* el_pt = dynamic_cast<ELEMENT*>(mesh_pt()->element_pt(e));
744  el_pt->output(some_file,npts);
745  }
746  some_file.close();
747 
748 } // end_of_doc_solution
void header(ofstream &some_file)
Definition: jeffery_hamel.cc:751
std::string directory() const
Output directory.
Definition: oomph_utilities.h:524
unsigned & number()
Number used (e.g.) for labeling output files.
Definition: oomph_utilities.h:554
string filename
Definition: MergeRestartFiles.py:39

References oomph::DocInfo::directory(), e(), MergeRestartFiles::filename, and oomph::DocInfo::number().

◆ element_output()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::element_output ( std::ostream &  outfile,
unsigned  e,
const unsigned nplot 
)

Output an individual element.

421 {
422  // Upcast from GeneralisedElement to the present element
423  ELEMENT* el_pt = dynamic_cast<ELEMENT*>(mesh_pt()->element_pt(e));
424 
425  el_pt->output(outfile,nplot);
426 
427 } // end_of_element_output

References e().

◆ fix_pressure()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::fix_pressure ( const unsigned int e,
const unsigned int pdof,
const double pvalue 
)
inline

Fix pressure in element e at pressure dof pdof and set to pvalue.

149  {
150  //Cast to full element type and fix the pressure at that element
151  dynamic_cast<ELEMENT*>(mesh_pt()->element_pt(e))->
152  fix_pressure(pdof,pvalue);
153  } // end of fix_pressure

References e().

◆ get_Jacobian_sign()

template<class ELEMENT >
int PolarNSProblem< ELEMENT >::get_Jacobian_sign
638 {
640  return sign;
641 } //End of get_Jacobian_sign
int Sign_of_jacobian
Storage for the sign of the global Jacobian.
Definition: problem.h:745
T sign(T x)
Definition: cxx11_tensor_builtins_sycl.cpp:172

References SYCL::sign().

◆ get_pext()

template<class ELEMENT >
double PolarNSProblem< ELEMENT >::get_pext
436 {
437  return External_pressure_data_pt->value(0);
438 }
double value(const unsigned &i) const
Definition: nodes.h:293

◆ get_shear_stress()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::get_shear_stress ( Vector< double > &  shear_stress)
456 {
457  //Find the number of shear elements
458  unsigned Nshear_lower = mesh_pt()->lower_stress_integral_elt_length();
459  unsigned Nshear_upper = mesh_pt()->upper_stress_integral_elt_length();
460 
461  //Storage for element pointer
463 
464  //Storage for answer
465  double lower=0.0,upper=0.0;
466 
467  for(unsigned e=0;e<Nshear_lower;e++)
468  {
469  el_pt = dynamic_cast<PolarStressIntegralElement<ELEMENT>*>(this->mesh_pt()->lower_stress_integral_elt_pt(e));
470  lower+= el_pt->get_shear_stress();
471  }
472  for(unsigned e=0;e<Nshear_upper;e++)
473  {
474  el_pt = dynamic_cast<PolarStressIntegralElement<ELEMENT>*>(this->mesh_pt()->upper_stress_integral_elt_pt(e));
475  upper+= el_pt->get_shear_stress();
476  }
477 
478  shear_stress[0]=lower;
479  shear_stress[1]=upper;
480 
481 } //End of get shear_stress
Definition: polar_stress_integral_elements.h:53
double get_shear_stress()
Function to calculate the shear stress along boundary.
Definition: polar_stress_integral_elements.h:224
std::string lower(std::string s)
returns the input string after converting upper-case characters to lower case
Definition: StringHelpers.cc:11

References e(), oomph::PolarStressIntegralElement< ELEMENT >::get_shear_stress(), and helpers::lower().

◆ get_symmetry()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::get_symmetry ( DoubleVector symmetry,
double  pressure_norm 
)
577 {
578  // First store the current dof values
579  this->store_current_dof_values();
580 
581  //Loop over nodes and set nodal values according to symmetry
582  unsigned num_nod= mesh_pt()->nnode();
583  for (unsigned inod=0;inod<num_nod;inod++)
584  {
585  // Get coordinates of node
586  double r = mesh_pt()->node_pt(inod)->x(0);
587  double phi = mesh_pt()->node_pt(inod)->x(1);
588 
589  // Anti-symmetric in u, symmetric in v
590  mesh_pt()->node_pt(inod)->set_value(0,r*phi*(1.-phi*phi));
591  mesh_pt()->node_pt(inod)->set_value(1,(1.-phi*phi));
592  }
593 
594  //Loop over fluid elements to set pressure dofs
595  unsigned n_fluid = mesh_pt()->fluid_elt_length();
596  for(unsigned e=0;e<n_fluid;e++)
597  {
598  // Upcast from GeneralisedElement to the present element
599  ELEMENT* el_pt = dynamic_cast<ELEMENT*>(mesh_pt()->element_pt(e));
600 
601  Vector<double> s(2,0.0);
602  double r = el_pt->interpolated_x(s,0);
603  double phi = el_pt->interpolated_x(s,1);
604  s[0]=-1.;double r_min = el_pt->interpolated_x(s,0);
605  s[0]=1.;double r_max = el_pt->interpolated_x(s,0);
606  s[1]=-1.;double phi_min = el_pt->interpolated_x(s,1);
607  s[1]=1.;double phi_max = el_pt->interpolated_x(s,1);
608 
609  double a = phi*(1.-phi*phi)*r*r;
610  double b = phi*(1.-phi*phi)*2.*r*(r_max-r_min)/2.;
611  double c = (1.-3.*phi*phi)*r*r*(phi_max-phi_min)/2.;
612 
613  //Set the pressure dofs to give an antisymmetric pressure
614  *el_pt->internal_data_pt(0)->value_pt(0) = a*pressure_norm;
615  *el_pt->internal_data_pt(0)->value_pt(1) = b*pressure_norm;
616  *el_pt->internal_data_pt(0)->value_pt(2) = c*pressure_norm;
617 
618  } // end loop over fluid elements
619 
620  //Finally set the value of pext (if appropriate)
623 
624  //Get the dofs
625  this->get_dofs(symmetry);
626 
627  // Finally restore the dof values
628  this->restore_dof_values();
629 
630 } //End of get_symmetry
Scalar * b
Definition: benchVecAdd.cpp:17
void set_pext(double p)
Definition: jeffery_hamel.cc:445
void get_dofs(DoubleVector &dofs) const
Definition: problem.cc:2479
void restore_dof_values()
Restore the stored values of the degrees of freedom.
Definition: problem.cc:8653
void store_current_dof_values()
Store the current values of the degrees of freedom.
Definition: problem.cc:8607
RealScalar s
Definition: level1_cplx_impl.h:130
const Scalar * a
Definition: level2_cplx_impl.h:32
double r_min
Definition: two_d_biharmonic.cc:237
double r_max
Definition: two_d_biharmonic.cc:238
int c
Definition: calibrate.py:100

References a, b, calibrate::c, e(), Global_Physical_Variables::inlet_traction, Global_Physical_Variables::outlet_traction, UniformPSDSelfTest::r, BiharmonicTestFunctions2::r_max, BiharmonicTestFunctions2::r_min, and s.

◆ header()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::header ( ofstream &  some_file)
752  {
753  using namespace Global_Physical_Variables;
754  some_file << "# Refineable mesh" << "\n";
755  some_file << "# Re = " << Re << " Alpha = " << Alpha << " R_l = " << R_l << "\n";
756  some_file << "# Initial xmesh = " << xmesh << " Initial ymesh = " << ymesh << "\n";
757  some_file << "# Uniform refinements: " << uniform << " Adaptive refinements: " << adaptive << "\n";
758  some_file << "# inlet_traction = " << inlet_traction << " eta_inlet = " << eta_inlet << "\n";
759  some_file << "# outlet_traction = " << outlet_traction << " eta_outlet = " << eta_outlet << "\n";
760  some_file << "# log_mesh = " << log_mesh << " new_outlet_region = " << new_outlet_region << "\n";
761  some_file << "# pinv = " << pinv << "\n";
762  some_file << "# Total equations = " << this->ndof() << "\n";
763  some_file << "\n";
764  }
unsigned long ndof() const
Return the number of dofs.
Definition: problem.h:1674
double Re
Reynolds number.
Definition: axisym_navier_stokes/counter_rotating_disks/counter_rotating_disks.cc:61
Global variables.
Definition: TwenteMeshGluing.cpp:60
int adaptive
Definition: jeffery_hamel.cc:106
bool new_outlet_region
Definition: jeffery_hamel.cc:93
bool log_mesh
Definition: jeffery_hamel.cc:92
int uniform
Definition: jeffery_hamel.cc:106
double R_l
Definition: jeffery_hamel.cc:57
double eta_inlet
Definition: jeffery_hamel.cc:80
double eta_outlet
Definition: jeffery_hamel.cc:83
double Alpha
Parameter for steepness of step.
Definition: two_d_adv_diff_adapt.cc:53

References Global_Physical_Variables::adaptive, TanhSolnForAdvectionDiffusion::Alpha, Global_Physical_Variables::eta_inlet, Global_Physical_Variables::eta_outlet, Global_Physical_Variables::inlet_traction, Global_Physical_Variables::log_mesh, Global_Physical_Variables::new_outlet_region, Global_Physical_Variables::outlet_traction, Global_Physical_Variables::pinv, Global_Physical_Variables::R_l, GlobalPhysicalVariables::Re, Global_Physical_Variables::uniform, Global_Physical_Variables::xmesh, and Global_Physical_Variables::ymesh.

◆ mesh_pt()

template<class ELEMENT >
jh_mesh<ELEMENT>* PolarNSProblem< ELEMENT >::mesh_pt ( )
inline
372  {
373  // Upcast from pointer to the Mesh base class to the specific
374  // element type that we're using here.
375  return dynamic_cast<jh_mesh<ELEMENT>*>(Problem::mesh_pt());
376  }

◆ output_streamfunction()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::output_streamfunction ( DocInfo doc_info,
bool  eigen 
)
511 {
512  //Create a streamfunction problem
513  // This needs to know if its solving for the flow or the eigenfunction
514  StreamfunctionProblem stream_problem(eigen);
515 
516  // Document the refines to date
517  Vector<Vector<unsigned> > refinement_pattern;
518  cout << "Obtaining refinement pattern of mesh" << endl;
519  this->mesh_pt()->get_refinement_pattern(refinement_pattern);
520  cout << "Refining streamfunction mesh to same level" << endl;
521  stream_problem.actions_before_adapt();
522  stream_problem.mesh_pt()->refine_base_mesh(refinement_pattern);
523  stream_problem.actions_after_adapt();
524  cout << "Streamfunction mesh refined to same level" << endl;
525  cout << "Number of (streamfunction) equations:" << stream_problem.assign_eqn_numbers() << endl;
526  cout << "Assigning velocities to streamfunction problem" << endl;
527  clock_t start=clock();
528 
529  unsigned num_nod1 = this->mesh_pt()->nnode();
530  unsigned num_nod2 = stream_problem.mesh_pt()->nnode();
531  cout << "num_nod1: " << num_nod1 << endl;
532  cout << "num_nod2: " << num_nod2 << endl;
533  for(unsigned i=0;i<num_nod2;i++)
534  {
535  double r2 = stream_problem.mesh_pt()->node_pt(i)->x(0);
536  double phi2 = stream_problem.mesh_pt()->node_pt(i)->x(1);
537 
538  int found=-1;int j=0;
539  double u=0.;double v=0.;
540  while(found<0)
541  {
542  double r = this->mesh_pt()->node_pt(j)->x(0);
543  double phi = this->mesh_pt()->node_pt(j)->x(1);
544  if((abs(r-r2)<1.e-8) && (abs(phi-phi2)<1.e-8))
545  {
546  u = this->mesh_pt()->node_pt(j)->value(0);
547  v = this->mesh_pt()->node_pt(j)->value(1);
548  found=1;
549  }
550  j+=1;
551  }
552 
553  // Transfer values across from old node to new node
554  stream_problem.mesh_pt()->node_pt(i)->set_value(1,u);
555  stream_problem.mesh_pt()->node_pt(i)->set_value(2,v);
556  }
557 
558  clock_t end=clock();
559  cout << "This took "<<(double(end-start))/CLOCKS_PER_SEC<<" seconds."<<endl;
560 
561  stream_problem.newton_solve();
562  stream_problem.doc_solution(doc_info);
563  //Select output file
564  char file_name[100];
565  sprintf(file_name,"my_streamfunction%i.dat",doc_info.number());
566  stream_problem.my_output(201,81,false,file_name);
567 
568 } //End of output_streamfunction
AnnoyingScalar abs(const AnnoyingScalar &x)
Definition: AnnoyingScalar.h:135
Array< int, Dynamic, 1 > v
Definition: Array_initializer_list_vector_cxx11.cpp:1
int i
Definition: BiCGSTAB_step_by_step.cpp:9
Polar Streamfunction problem class.
Definition: streamfunction_include.h:161
bool found
Definition: MergeRestartFiles.py:24
string file_name
Definition: Particles2023AnalysisHung.py:321
std::ptrdiff_t j
Definition: tut_arithmetic_redux_minmax.cpp:2

References abs(), oomph::StreamfunctionProblem::actions_after_adapt(), oomph::StreamfunctionProblem::actions_before_adapt(), oomph::Problem::assign_eqn_numbers(), oomph::StreamfunctionProblem::doc_solution(), Eigen::placeholders::end, Particles2023AnalysisHung::file_name, MergeRestartFiles::found, i, j, oomph::StreamfunctionProblem::mesh_pt(), oomph::StreamfunctionProblem::my_output(), oomph::Problem::newton_solve(), oomph::Mesh::nnode(), oomph::Mesh::node_pt(), oomph::DocInfo::number(), UniformPSDSelfTest::r, oomph::TreeBasedRefineableMeshBase::refine_base_mesh(), oomph::Data::set_value(), oomph::CumulativeTimings::start(), v, and oomph::Node::x().

◆ pin_boundaries()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::pin_boundaries ( )
inline

Pin boundaries.

277  {
278  // Inlet/Outlet perturbation
279  //Which ends do we need to pin both u and v at?
280  unsigned long start=1,end=4;
283 
284  for(unsigned long ibound=start;ibound<end;ibound+=2)
285  {
286  cout << "Pinning u on boundary: " << ibound << endl;
287  unsigned num_nod= mesh_pt()->nboundary_node(ibound);
288  for (unsigned inod=0;inod<num_nod;inod++)
289  {
290  //pin u velocity
291  mesh_pt()->boundary_node_pt(ibound,inod)->pin(0);
292  //pin v velocity
293  mesh_pt()->boundary_node_pt(ibound,inod)->pin(1);
294  }
295  } // End pinning of inlet and outlet
296 
298  {
299  //If we haven't just pinned v at the inlet (end=2)
300  //then pin it here
301  if(end==2)
302  {
303  unsigned long ibound=3;
304  cout << "Pinning v at inlet. " << endl;
305  unsigned num_nod= mesh_pt()->nboundary_node(ibound);
306  for (unsigned inod=0;inod<num_nod;inod++)
307  {
308  //pin u velocity
309  mesh_pt()->boundary_node_pt(ibound,inod)->pin(1);
310  }
311  }
312  } // end pin v at inlet
313 
314  //Pin velocities on side walls to zero
315  unsigned num_bound = mesh_pt()->nboundary();
316  for(unsigned ibound=0;ibound<num_bound;ibound+=2)
317  {
318  unsigned num_nod= mesh_pt()->nboundary_node(ibound);
319  for (unsigned inod=0;inod<num_nod;inod++)
320  {
321  // Loop over values (u and v velocities)
322  for (unsigned i=0;i<2;i++)
323  {
324  mesh_pt()->boundary_node_pt(ibound,inod)->pin(i);
325  }
326  }
327  } // end loop over side walls
328 
329  } // end_of_pin_boundaries

References Eigen::placeholders::end, i, Global_Physical_Variables::inlet_traction, Global_Physical_Variables::outlet_traction, Global_Physical_Variables::pinv, and oomph::CumulativeTimings::start().

◆ pin_boundaries_to_zero()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::pin_boundaries_to_zero
488 {
489  //Initially set to zero both inlet and outlet
490  unsigned long start=1,end=4;
491  //But which ends have we pinned u at?
494  for(unsigned long ibound=start;ibound<end;ibound+=2)
495  {
496  unsigned num_nod= mesh_pt()->nboundary_node(ibound);
497  for (unsigned inod=0;inod<num_nod;inod++)
498  {
499  //Pin to zero
500  mesh_pt()->boundary_node_pt(ibound,inod)->set_value(0,0.0);
501  }
502  }//End of dirichlet inlet/outlet in u
503 
504 } //End of pin_boundaries_to_zero

References Eigen::placeholders::end, Global_Physical_Variables::inlet_traction, Global_Physical_Variables::outlet_traction, and oomph::CumulativeTimings::start().

◆ set_pext()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::set_pext ( double  p)
447 {
449 }
float * p
Definition: Tutorial_Map_using.cpp:9
void set_value(const unsigned &i, const double &value_)
Definition: nodes.h:271

References p.

◆ setup_external_pressure()

template<class ELEMENT >
void PolarNSProblem< ELEMENT >::setup_external_pressure ( )
inline

Set up external pressure and pass to traction elements.

333  {
334  //Create a Data object whose single value stores the
335  //external pressure
337 
338  // Set external pressure
340 
341  //Now assign it to the problem
343 
344  } // end of setup_external_pressure
Definition: nodes.h:86

References oomph::Data::set_value().

Member Data Documentation

◆ External_pressure_data_pt

template<class ELEMENT >
Data* PolarNSProblem< ELEMENT >::External_pressure_data_pt
private

Data object whose single value stores the external pressure.


The documentation for this class was generated from the following file: